BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48140.1
Length=1441
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494865 jgi|Araly1|494865|fgenesh2_kg.8__681__AT5G48140.1 2200 0.0
Ahg478120 jgi|Araly1|478120|fgenesh2_kg.3__821__AT3G07820.1 922 0.0
> Ahg494865 jgi|Araly1|494865|fgenesh2_kg.8__681__AT5G48140.1
Length=1387
Score = 2200 bits (1191), Expect = 0.0
Identities = 1326/1390 (95%), Gaps = 13/1390 (1%)
Strand=Plus/Plus
Query 62 aaaaaT-AAAGTAAATAAAAGTAATCACTAGCTAGTGACTAAACTAAATCCCAATTATGG 120
|||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1 AAAAATAAAAATAAATAAAAGTAATCACTAGCTAGTGACTAAAATAAATCCCAATTATGG 60
Query 121 GTCGTGTACATTTTGGTGTATCAGCATTCTTTGTTTTTTGTTTGTTAGGTTTATCAGCTA 180
|||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 GTCGTGTACATTTTGGAGTATCAGCATTCTTTGTTTTTTGTTTGTTATGTTTATCAGCTA 120
Query 181 ATGCAAAGATCTTCAATATTAATTCTCCTCCAGGTTCTGATATCACTAACGCATTGTTGA 240
|||||||| ||||||| ||| |||||||||||||||||||||||| |||||||||||||
Sbjct 121 ATGCAAAGGTCTTCAACATTGGTTCTCCTCCAGGTTCTGATATCACCAACGCATTGTTGA 180
Query 241 AAGCATTCAATGAGGCATGCCAATTCCCGACAAAGAGCACCGTTATGATCCCAAAAGGTG 300
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 AAGCATTCAATGAGGCATGCCAATTCCCGACAAAGAGCACCGTTCTGATCCCAAAAGGTG 240
Query 301 AATACAAGCTTGGGGAGATCGTGATGATGGGTCCATGCAAAGCTCCTATAAGGATTGCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 241 AATACAAGCTTGGGGAGATCGTGATGATGGGTCCATGCAAAGCTCCTATAACGATTGCTC 300
Query 361 TTCTAGGTACCGTGAAAGCTGACGGTAACGCTAATGGAAAGGAGAAATGGGTCGCTTTCC 420
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTCAAGGTACCGTGAAAGCCGACGGTAACGCTAATGGAAAGGAGAAATGGGTCGCTTTCC 360
Query 421 GCAACATTAATGGGTTTAAGTTGAACGGAGGTGGTGTTTTCGACGGTGAAGGAAACGCAG 480
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GCAATATTGATGGGTTTAAGTTGAACGGAGGTGGTGTTTTCGACGGTGAAGGAAACGCAG 420
Query 481 CTTGGAGGGTCAACAACTGCCACAAGACTTTCAACTGCAAGAAGCTCCCCATCAGCATTA 540
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 421 CATGGAGGGTCAACAACTGCCACAAGACTTTCAACTGCAAGAAACTCCCCATCAGCATCC 480
Query 541 GGTTTGATTTCGTCACCGACGCGAAAATTAGAGGCATTACCTCCTTAGATGCAAAGCACT 600
| ||||||||||| ||| ||||||||||||||||||| |||||||||||||||||| |||
Sbjct 481 GTTTTGATTTCGTGACCAACGCGAAAATTAGAGGCATAACCTCCTTAGATGCAAAGAACT 540
Query 601 TCCACATTAACGTCATTGGAGCAAAGAACGTGACATTCGAAGACGTCAAGATCATTGCCC 660
||||||||||||| || || ||||||||| ||||||||||||||||||||||||| ||||
Sbjct 541 TCCACATTAACGTGATCGGTGCAAAGAACATGACATTCGAAGACGTCAAGATCATCGCCC 600
Query 661 CTGCAGAGAGTCCCAACACCGATGGTATCCACGTTGGAAGAAGTGACGGAATCAAGATCA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTGCAGAGAGTCCCAACACCGATGGTATCCACGTTGGAAGAAGTGACGGAATCAAGATCA 660
Query 721 TCAATTCATTTATCTCCACAGGAGATGACTGTGTCTCTGTTGGAGATGGGATGAAGAACC 780
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 661 TCAATTCATTTATCTCCACAGGAGATGACTGTGTCTCTGTTGGAGATGGAATGAAGAACC 720
Query 781 TTCTTGTCGAAAGAGTTACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGAA 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TTCTTGTCGAAAGAGTTACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGAA 780
Query 841 GGTACAGCCACGAGGAAAACGTTAGTGGCATCAAGATCATCAACTGCACTCTCCAAGAGA 900
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 781 GGTACAGCCACGAGGAAAACGTCAGTGGCATCAAGATCATCAACTGCACCCTCCAAGAGA 840
Query 901 CTGACAATGGTCTAAGGATCAAGACATGGCCTTCTGCTGCTTGTACCACAACCGCCTCCG 960
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 841 CTGACAATGGGCTAAGGATCAAGACATGGCCTTCTGCAGCTTGTACCACAACCGCCTCCG 900
Query 961 ATATCCATTTCGAGAACATCCTCCTCAAGAACGTCAGCAACCCCATCCTCATCGACCAAG 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 ATATCCATTTCGAGAACATCCTCCTCAAGAACGTCAGCAACCCCATCCTCATCGACCAAG 960
Query 1021 AGTACTGCCCATGGAACCAATGCAACAAGCAGAAACCATCAACGATCAAGTTGGCCAACA 1080
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 961 AGTACTGCCCATGGAACCAATGCAACAAGCAGAAACCATCAACAATCAAGTTGGCCAACA 1020
Query 1081 TTAGCTTCAAGAAGATCAGAGGAACATCAGGAAACAAAGACGCAGTGAAGCTTTTGTGTA 1140
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1021 TAAGCTTCAAGAAGATCAGAGGAACATCAGGAAACAAAGACGCGGTGAAGCTTTTGTGCA 1080
Query 1141 GCAAGGGATATCCATGTCAGAACGTTGAGGTTGGTGACGTGAACATCCAGTATACCGGAG 1200
|||||||| |||||||||||||||| ||||| |||||| | |||||| ||||||||||||
Sbjct 1081 GCAAGGGACATCCATGTCAGAACGTGGAGGTAGGTGACATTAACATCAAGTATACCGGAG 1140
Query 1201 CAGATGGTCCAGCGACTTTCCAATGCTCTAACGTATCACCAAAGCTTGTGGGAACTCAGA 1260
| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1141 CCGACGGTCCAGCGACTTTCCAATGCTCAAACGTATCACCAAAGCTTGTGGGAACTCAGA 1200
Query 1261 TTCCAAAAGCGTGTAGCAGCCCGGTGACAAAGCCACCAAAGTAGAA--TGTGTATATATT 1318
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 TTCCAAAAGCGTGTAGCAGCCCGGTGACAAAGCCACCAAAGTAGAAAGTGTGTATATATT 1260
Query 1319 ATAAACTCAATACACAATCTAAATGTACACCCTTAGTGTATGCTGTA--T--GCTT-CAA 1373
||| |||| ||||||||||||||||| ||||| ||||||||||||| | |||| |||
Sbjct 1261 ATATGCTCA-TACACAATCTAAATGTATACCCT-AGTGTATGCTGTACGTATGCTTTCAA 1318
Query 1374 TTGATATCTTTGTGAAATGACCTAtttttttGAGCTTTTGG-TATATTGTAAGAAATGAA 1432
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1319 TTGATATCTTTGTGAAATAACCTATTTTTTTGAGCTTTTGGCTATATTGTAAGAAATGAA 1378
Query 1433 -CCATTCTTG 1441
|| ||||||
Sbjct 1379 TCC-TTCTTG 1387
> Ahg478120 jgi|Araly1|478120|fgenesh2_kg.3__821__AT3G07820.1
Length=1355
Score = 922 bits (499), Expect = 0.0
Identities = 941/1148 (82%), Gaps = 55/1148 (5%)
Strand=Plus/Plus
Query 159 TGTTTGTTAGG-TTTATCAGCTAATGCAAAGATCTTCAATATTAATTC-TCCTCCAGGTT 216
|||||||| || || ||||| ||||| || | |||| ||| ||| || | ||||||
Sbjct 96 TGTTTGTTGGGAATT-TCAGCCAATGCTGAGGTATTCACCATTGGTTCGTCAT-CAGGTT 153
Query 217 CTGATATCACTAACG-CATTGTTGAAAGCATTCA-ATGAGGCATGCCAATTC-CCGACA- 272
||||||| ||| | | | || |||||||||||| || |||||||||| || || ||
Sbjct 154 CTGATATTACTCAGGCCCTT-CTGAAAGCATTCACAT-CGGCATGCCAA-TCTTCGTCAC 210
Query 273 AAGAGCACCGTTATGATCCCAAAAGGTGAATACAAGCTTGGGGAGATCGTGATGATGGGT 332
| |||| || ||||||||||||| || | ||||||||| ||||||| ||||| ||||
Sbjct 211 CA-AGCAAAGTGGTGATCCCAAAAGGAGAGTTCAAGCTTGGTGAGATCGAGATGAGGGGT 269
Query 333 CCATGCAAAGCT-CC-TATAAGGATTGCTCTTCTAGGTACCGTGAAAGCTGACGGTAACG 390
|||||||||||| || | | ||| | | |||| |||||| || ||||||||||||||||
Sbjct 270 CCATGCAAAGCTCCCGT-TGAGG-TCACCCTTCAAGGTACTGTCAAAGCTGACGGTAACG 327
Query 391 CTA---ATGGAAAGGAGAAATGGGTCGCT-TTCCGCAACATTAATGGGTTTAAGTTGAAC 446
||| | ||||||||||||||||||| | ||| |||||||| |||| ||||||||||||
Sbjct 328 CTATCCAAGGAAAGGAGAAATGGGTCG-TCTTCGGCAACATTGATGGCTTTAAGTTGAAC 386
Query 447 GGAGGTGGTGTTTTCGACGGTGAAGGAAACGCAGCTTGGAGGGTCAACAACTGCCACAAG 506
|||||||| | |||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct 387 GGAGGTGGAGCCTTCGACGGTGAAGGAAACTCTGCGTGGAGGGTCAACAACTGCCACAAG 446
Query 507 ACTTTCAACTGCAAGAAGCTCCCCATCAGCATTAGGTTTGATTTCGTCACCG-ACGC-GA 564
|| |||||||||||||| || |||||||| || |||||||| ||||| | || | |
Sbjct 447 ACCTTCAACTGCAAGAAACTTCCCATCAGTATAAGGTTTGACTTCGT-GTTGAACTCTG- 504
Query 565 AAATTAGAGGCATTA-CCTCCTTAGATGCAAAGCACTTCCACATTAACGTCATT-GGAGC 622
| || |||| || || |||| | ||||||||| | |||||||| ||||| || |||||
Sbjct 505 AGATCAGAGACA-TATCCTCGATCGATGCAAAGAATTTCCACATCAACGT-GTTGGGAGC 562
Query 623 AAAGAACGTGA-CATTCGA-AGACGTCAAGATCATTGCCCCTGCA-GAGAGTCCCAACAC 679
|||||| ||| || | || | || |||||||||| || || | | ||||||||||||||
Sbjct 563 CAAGAACATGACCA-TGGATA-ACATCAAGATCATCGCTCCAG-AGGAGAGTCCCAACAC 619
Query 680 CGATGGTATCCACGTT-GGAAGAAGTGACGGAATCAAGATCATCAATTCATTT-ATCTCC 737
||||| ||||| || ||||||||||||||| |||||||| | || || ||| ||||||
Sbjct 620 TGATGGGATCCA-TTTGGGAAGAAGTGACGGAGTCAAGATCCTTAACTC-TTTCATCTCC 677
Query 738 ACAGGAGATGACTGTGTCTCTGTTGGAGATGGGATGAAGAACCTTCTTGTCGA-AAGAGT 796
|| ||||| || || |||| ||||||||||||||||||||||||| || || || |||
Sbjct 678 ACCGGAGACGATTGCATCTCCGTTGGAGATGGGATGAAGAACCTTCACGTGGAGAA-AGT 736
Query 797 TACATGCGGTCCGGGACATGGAATCAGTATTGGAAGTCTTGGAAGGTACAGCCACGAGGA 856
|||||||||||| ||||| ||||||||| | ||||| |||||||||||| | |||||| |
Sbjct 737 TACATGCGGTCCAGGACACGGAATCAGTGTCGGAAGCCTTGGAAGGTACGGACACGAGCA 796
Query 857 AAACGTTAGTGGCATCAAGATCATCAACTGCACTCTCCAAGAGACTGACAATGG-TCTAA 915
| |||| || ||||| ||||||||||||||||||||||||||||||||||| || | | |
Sbjct 797 AGACGTCAGCGGCATTAAGATCATCAACTGCACTCTCCAAGAGACTGACAACGGGT-TGA 855
Query 916 GGATCAAGACATGGCCTTCTGCTGCTTG-TACCACAACCGCCTCCGATATCCATTTCGAG 974
| |||||||||||||| ||||| ||||| | |||| |||||||| |||||||||||||||
Sbjct 856 GAATCAAGACATGGCCCTCTGCAGCTTGCT-CCACCACCGCCTCGGATATCCATTTCGAG 914
Query 975 AACATCCTCCTCAAGAACGTCAGCAACCCCATCCTCATCGACCAAGAGTACTGCCCATGG 1034
| ||| || |||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 915 GATATCATCGTCAAGAACGTTAGCAACCCAATCCTCATCGACCAAGAGTACTGCCCTTGG 974
Query 1035 AACCAATGCAACAAGCAGAAACCATCAACGATCAAGTTGGCCAACATTAGCTTCAAGAAG 1094
||||||||||||||||| ||| ||||||| || ||||||| ||||| |||||||||||
Sbjct 975 AACCAATGCAACAAGCAAAAAGCATCAACAATTAAGTTGGTGAACATAAGCTTCAAGAAT 1034
Query 1095 ATCAGAGGAACATCAGGAAACAAAGACGCAGTGAAGCTT-TTGTGTAGCAAGGGATATCC 1153
||||||||||||||||| ||||| ||||| |||||||| || || ||||||||||||||
Sbjct 1035 ATCAGAGGAACATCAGGGAACAAGGACGCGGTGAAGCTACTT-TGCAGCAAGGGATATCC 1093
Query 1154 ATGTCAGAACGTTGAGGTTGGTGACGT-GAACATCCAGTATACCGGAGCAGATGGTCCAG 1212
|| |||||||| ||| |||| ||| | || || |||| | ||||| ||||||||||
Sbjct 1094 GTGCCAGAACGTGGAGATTGGAGACATTGAT-ATTAAGTACAATGGAGCCGATGGTCCAG 1152
Query 1213 CGACTTTCCAATGCTCTAACGT-A-TCACCAAAGCT-TGTGGGAACTCAGATTCCAAAAG 1269
||||||||||||| || || || | || ||||| || | ||||| |||||| || ||||
Sbjct 1153 CGACTTTCCAATGTTCAAATGTCAGTC-CCAAA-CTCT-TGGGATCTCAGAGCCCTAAAG 1209
Query 1270 CGTGTAGC 1277
| || |||
Sbjct 1210 CATGCAGC 1217
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53897696675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5