BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48160.1
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494868 jgi|Araly1|494868|fgenesh2_kg.8__684__AT5G48160.2 2767 0.0
Ahg340965 jgi|Araly1|340965|fgenesh1_pg.C_scaffold_3000728 1026 0.0
> Ahg494868 jgi|Araly1|494868|fgenesh2_kg.8__684__AT5G48160.2
Length=1960
Score = 2767 bits (1498), Expect = 0.0
Identities = 1728/1840 (94%), Gaps = 11/1840 (1%)
Strand=Plus/Plus
Query 106 GGTTTAATATTTGATGGGAACATCATCTGGTTCGAATCATCCTCACCAAATGTTACCACC 165
|||| |||| |||||||| ||||| |||||||| |||||||||||||| |||||||||||
Sbjct 131 GGTTAAATA-TTGATGGGCACATCGTCTGGTTCCAATCATCCTCACCAGATGTTACCACC 189
Query 166 ACGTCAACAACAACGAAGTGGAGGAGGACTTGAAACAGCTCTTTCACTAGTCTCTTCAGA 225
||||||||||||||||| | ||||| || ||||||||||||||||| || ||||| ||
Sbjct 190 ACGTCAACAACAACGAAAT---GGAGGTCTCGAAACAGCTCTTTCACTCGTATCTTCGGA 246
Query 226 TCAAGAGCCGCGTCGCGAGTCTCCAGCGGAGAGTGCGAGTTCTCAAGAAACATGGCCACT 285
||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 247 TCAGGAGCCACGTCGCGAGTCTCCAGCCGAGAGTGCGAGTTCTCAAGAAACATGGCCACT 306
Query 286 AGGAGACACTGTTGCTGGGAAGAAGTCAATGAGTCAAAAGACAGAGCCTGATTCTATGGA 345
|||||||||||||| ||||||||| || ||||||||||||| ||||||||||||| |||
Sbjct 307 CGGAGACACTGTTGCGGGGAAGAAGACAGTGAGTCAAAAGACGGAGCCTGATTCTACGGA 366
Query 346 ACAAACTGTGAATGTGATGCACCATGTTTCGAATGCGGACAAGGTATCGGTACGGGATAT 405
||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 367 ACAAAATGTGAATGTTATGCACCATGTGTCGAATGCGGATAAGGTATCGGTACGGGATAT 426
Query 406 CGCTAGGGAAAGAGTTGAGTTAGTTGCAGAGAGAATGCATCGATTACCGGATGAGTTTCT 465
|||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||
Sbjct 427 AGCTAGGGAAAGAGTTGAGTTGGTTGCGGAGAGAATGCATCGATTGCCGGATGAGTTTCT 486
Query 466 TGACGAGTTAAAGAACGGTCTTAAGTCTATCCTTGAAGGGAATGTAGCGCAGAGTGTTGA 525
||| |||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||
Sbjct 487 TGATGAGTTAAAGAACGGTCTTAAGTCTATACTTGAGGGGAATGTAGCGCAGAGTGTGGA 546
Query 526 TGAGTTCATGTTCTTGCAGAAGGTTGTTCAGAGTAGAACTGATTTGAGCTCTGTAACACT 585
|||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 547 TGAGTTCATGTTCTTGCAGAAGCTTGTTCAGAGTAGATCTGATTTGAGCTCTACAACACT 606
Query 586 TGTTAGAGCTCATCGGGTGCAGCTTGAGATACTTGTAGCGATAAATACCGGGATTCAGGC 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 607 TGTTAGAGCTCATCGGGTGCAGCTTGAGATACTTGTAGCGATAAATACCGGGATTCAGGC 666
Query 646 GTTTTTGCATCCGAATATTAGTCTGTCTCAGCCGTCTCTTATCGAGATTTTTGTATACAA 705
||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 667 GTTCTTGCATCCGAACATCAGTCTGTCTCAGCCGTCTCTTATCGAGATTTTTGTATACAA 726
Query 706 GAGATGTAGAAACATAGCTTGCCAAAATCAACTACCTGCTGATGATTGCTACTGTGATAT 765
|||||||||||||||||| || ||||| |||||||| ||||||||||||||||| || ||
Sbjct 727 GAGATGTAGAAACATAGCCTGTCAAAACCAACTACCGGCTGATGATTGCTACTGCGAAAT 786
Query 766 ATGTACTAATAGGAAAGGGTTTTGTAACCTTTGTATGTGTACGATCTGTAACAAGTTTGA 825
||| ||||| ||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 787 ATGCACTAACAGGAAAGGGTTCTGCAACCTTTGTATGTGTACGATCTGTAACAAGTTTGA 846
Query 826 TTTTTCGGTTAATACTTGCCGCTGGATCGGATGTGACTTGTGTTCCCACTGGACTCATAC 885
|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 847 TTTTTCTGTCAATACTTGCCGCTGGATCGGATGCGACTTGTGTTCCCACTGGACTCATAC 906
Query 886 GGATTGTGCTATTCGGGATGGACAGATCACCACTGGATCCTCTGCTAAGAATAATACTTC 945
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||| ||
Sbjct 907 AGATTGTGCTATTCGGGATGGACAGATCACCACGGGATCCTCTGCTAAG---AATACATC 963
Query 946 AGGTCCAGGAGAGATAGTGTTTAAGTGTCGGGCTTGTAACCGAACGTCTGAGCTGTTGGG 1005
|||||||||||| |||||||| ||||| ||||||||||| || |||||||||||| ||||
Sbjct 964 AGGTCCAGGAGAAATAGTGTTCAAGTGCCGGGCTTGTAATCGGACGTCTGAGCTGCTGGG 1023
Query 1006 ATGGGTTAAAGATGTGTTTCAGCACTGTGCACCGAACTGGGATCGAGAATCTTTGATGAA 1065
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1024 ATGGGTTAAAGATGTGTTTCAGCACTGTGCACCAAACTGGGATCGGGAATCTTTGATGAA 1083
Query 1066 GGAACTTGATTTTGTTAGTAGGATTTTCCGCGGAAGCGAAGATCAACGAGGTAGGAAACT 1125
|||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 GGAACTCGACTTTGTTAGTAGGATTTTCCGCGGAAGCGAAGATCAACGAGGTAGGAAACT 1143
Query 1126 GTTTTGGAAGTGTGAGGAGCTTATTGACAAGATTAAAGGTGGTTTGGCTGAAGCAACTGC 1185
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1144 GTTTTGGAAGTGTGAGGAGCTTATCGACAAGATTAAAGGTGGTTTGGCTGAAGCAACTGC 1203
Query 1186 TGCCAAATTGATATTAATGTTTTTCCAAGAGATCGAATCAGACTCTGCGAAGAGCTTTGA 1245
|||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1204 TGCCAAATTGATATTAATGTTTTTCCAAGAGATCGAATTAGACTCCGCGAAGAGCTTTGA 1263
Query 1246 AAATGGAGAAGGTGGACGTTTGATGGCACCTCAGGATGCATGCAACCGAATTGCTGAAGT 1305
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1264 AAATGGAGAAGGCGGACGTTTGATGGCACCTCAGGATGCATGCAACCGAATTGCTGAAGT 1323
Query 1306 TGTACAAGAGACTTTGAGGAAAATGGAGATAGTGGCTGAGGAGAAGATGAGAATGTTCAA 1365
|||||| || ||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1324 TGTACAGGAAACTCTGAGGAAAATGGAGATAGTGGCTGAGGAGAAGATGAGGATGTTCAA 1383
Query 1366 GAAGGCACGCATGGCTCTTGAGACATGCGATAGAGAGCTCGAAGACAAAGCCAAGGAAGT 1425
|||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 1384 GAAGGCACGCATGGCTCTCGAGACTTGTGATAGAGAGCTCGAAGACAAAGCCAAGGAAGT 1443
Query 1426 TTCAGAACTGAAAGCAGAGAGGCAGAAGAAGAAACTTCAGATAGATGAGCTAGAGAGAAT 1485
||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 1444 AGCAGAACTGAAAGCGGAGAGGCAGAAGAAGAAACTTCAGATAGACGAGTTAGAGAGAAT 1503
Query 1486 CGTGAGGCTGAAGCAAGCGGAGGCAGACATGTTCCAGCTTAAAGCAAATGAAGCAAAGCG 1545
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1504 TGTGAGGCTGAAGCAAGCAGAGGCAGACATGTTCCAGCTTAAAGCAAACGAAGCAAAGCG 1563
Query 1546 GGAGGCTGATAGGTTGCAGAGGATTGTACTAGCGAAAATGGATAAGTCTGAGGAGGAATA 1605
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GGAGGCTGATAGATTGCAGAGGATTGTACTAGCGAAAATGGATAAGTCTGAGGAGGAATA 1623
Query 1606 CGCAAGTAACTATCTGAAACAGAGGCTGAGTGAGGCCGAGGCAGAGAAGCAGTATCTGTT 1665
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1624 CGCAAGTAACTATCTGAAACAGAGGCTGAGCGAGGCCGAGGCAGAGAAGCAGTATCTGTT 1683
Query 1666 TGAGAAGATTAAGCTGCAGGAAAACTCAAGGGTGGCATCACAAAGCAGTGGTGGGGGAGG 1725
|||||||||||||||||||||||| || |||||||||||||| |||||||| || |||||
Sbjct 1684 TGAGAAGATTAAGCTGCAGGAAAATTCGAGGGTGGCATCACAGAGCAGTGGCGGTGGAGG 1743
Query 1726 AGACCCGTCACAGGTGATGATGTACTCAAAGATCCGCGATCTGCTTCAAGGATACAATCT 1785
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1744 TGACCCGTCACAGGTGATGATGTACTCAAAGATCCGCGATCTGCTTCAAGGATACAATCT 1803
Query 1786 CTCTCCCAAGGTTGATCCTCAATTAAACGAGCGTAATCCTTTCAGATCCAATCCCTAATG 1845
|||||||||||| |||||||||| |||||||||||||||||||||||||||||| | |||
Sbjct 1804 CTCTCCCAAGGTAGATCCTCAATCAAACGAGCGTAATCCTTTCAGATCCAATCCTTGATG 1863
Query 1846 CTTC-TTCCTCCCTTATATATATATGTAGTTTTCATATCCTAAATTTCATCACTGTGTTT 1904
|| | ||||||||||||| | ||||||||||||||||||||||| |||||||| |||||
Sbjct 1864 CT-CGTTCCTCCCTTATA-A-ATATGTAGTTTTCATATCCTAAAACTCATCACTTTGTTT 1920
Query 1905 TGTAAAACGAGTGTTTGTTGCCGTGTAGGATCTATCTATA 1944
|||||||| ||||||||| |||||||||||||||||||||
Sbjct 1921 TGTAAAACAAGTGTTTGTAGCCGTGTAGGATCTATCTATA 1960
> Ahg340965 jgi|Araly1|340965|fgenesh1_pg.C_scaffold_3000728
Length=1704
Score = 1026 bits (555), Expect = 0.0
Identities = 1297/1642 (79%), Gaps = 104/1642 (6%)
Strand=Plus/Plus
Query 238 TCGCGAGTCTCCAGCGGAGAGTGCGAGTTCTCAAGAAACATGGCC-A-CTAGGAGACA-C 294
||| || || ||||| || ||||| || ||||||||||| ||||| | || | | | |
Sbjct 123 TCGTGAATCACCAGCTGAAAGTGCTAGCTCTCAAGAAACTTGGCCAACCT--CA-AAATC 179
Query 295 TGTTGCTGGG-AAGAAGTCA-ATGAGTC-AAAAGACAGAGCCTGATTCT-ATGGAACAAA 350
| || |||| || ||| || | ||| | |||||||| |||||| ||| || || | ||
Sbjct 180 TATT-ATGGGAAATAAGACAGA-GAG-CGGAAAGACAGGGCCTGACTCTCAT-GATC-AA 234
Query 351 CTGTGAATGTGATGCACCATGTTTCGAATGCGGACAAGGTATCGGTACGGGATATCGCTA 410
| | ||| || | |||| |||| | ||| || |||||||| ||||||| || ||||
Sbjct 235 C--T---TGTCATCCGCCATCTTTCCATTGCTGATAAGGTATCACTACGGGACATAGCTA 289
Query 411 GGGAAAGAGTTGAGTTAGTTGCAGAGAGAATGCATCGATTACCGGATGAGTTTCTTGACG 470
||||||||||||| |||| || ||||||||||| |||||||| || || | ||| ||||
Sbjct 290 GGGAAAGAGTTGACATAGTCGCTGAGAGAATGCACCGATTACCAGAAGAATATCTCGACG 349
Query 471 AGTTAAAGAACGGTCTTAAGTCTATCCTTGAAGGG-AAT-GTAGCGCAGAGTGTTGATGA 528
||||||||||||| |||||| ||||||||| |||| ||| || || ||| | | |||||
Sbjct 350 AGTTAAAGAACGGCCTTAAGGCTATCCTTG-AGGGAAATGGT-GCCCAGCCTATAGATGA 407
Query 529 GTTCATG-TTCTTGCAGAAGGTTGTTCAGAGTAGAACTGATTTGAGC-TCTGTA-ACACT 585
||| ||| ||| |||||||| |||| |||| ||| ||||||| | | || | |||||
Sbjct 408 GTTTATGTTTC-TGCAGAAGTTTGTCCAGACCAGATCTGATTT-AACTTC-AAAGACACT 464
Query 586 TGTTAGAGCTCATCGGGTGCAGCTTGAGATACTTGTAGCGATAAATACCGGGATTCAGGC 645
||| || ||||| || ||||||||||| || ||||| | ||||| || || || || ||
Sbjct 465 TGTCAGGGCTCACCGAGTGCAGCTTGAAATCCTTGTGGTTATAAACACTGGAATCCAAGC 524
Query 646 GTTTTTGCATCCGAATATTAGTCTGTCTCAGCCGTCTCTTATCGAGATTTTTGTATACAA 705
|| ||||| || || || | ||| |||||| | || || |||||||| ||||| |||||
Sbjct 525 ATTCTTGCACCCAAACATCAATCTCTCTCAGTCATCGCTCATCGAGATCTTTGTGTACAA 584
Query 706 GAGATGTAGAAACATAGCTTGCCAAAATC-AACTACCTGCTGATGATTGCT-ACTGTGAT 763
|||||| ||||||||||| |||||||| | |||| || ||||||| ||| | |||||||
Sbjct 585 GAGATGCAGAAACATAGCGTGCCAAAA-CGAACTCCCGGCTGATGGTTG-TCCCTGTGAT 642
Query 764 ATATGTACTAATAGGAAAGGGTTTTGTAACCTTTGTATGTGTACGATCTGTAACAAGTTT 823
||||| ||||||||||||| || || ||||| || |||||| ||||||||||||||||
Sbjct 643 ATATGCGCTAATAGGAAAGGCTTCTGCAACCTGTGCATGTGTGTGATCTGTAACAAGTTT 702
Query 824 GATTTTTCGGTTAATACTTGCCGCTGGATCGGATGTGACT-TGTGTTCCCACTGGACTCA 882
|| ||| |||| || || ||||||||||| || || || | ||||||| || ||||||||
Sbjct 703 GACTTTGCGGTCAACACATGCCGCTGGATTGGCTGCGA-TGTGTGTTCTCATTGGACTCA 761
Query 883 TACGGATTGTGCTATTCGGGATGGACAGATCACCACT-GGA-TCCTCTGCTAAGAATAAT 940
|||||||||||||||| |||||||| |||| | | | ||| | ||| | ||| | |
Sbjct 762 TACGGATTGTGCTATTAGGGATGGAGAGATTTCGA-TGGGAGT-TTCTCCCAAG-AGCGT 818
Query 941 ACTTCAGGTCCAGGAGAGATAG-TGTTTAAGTGTCGGGCTTGTAACCGA-ACGTCTGAGC 998
| || || ||||| || | |||| |||||||| || || |||| | || |||||
Sbjct 819 A--TCTGGGATGGGAGAAAT-GTTGTTCAAGTGTCGAGCCTGCAACC-ATACTTCTGAAT 874
Query 999 TGTTGGGATGGGTTAAAGATGTGTTTCAGCACTGTGCACCGAACTGGGATCGAGAATCTT 1058
|| |||| |||||||||||||||||||||||||||||||| ||||||||| | |||||||
Sbjct 875 TGCTGGGGTGGGTTAAAGATGTGTTTCAGCACTGTGCACCAAACTGGGATAGGGAATCTT 934
Query 1059 TGATGAAGGAACTTGATTTTGTTAGTAGGATTTTCCGCGGAAGCGAAGAT-CAACGAGGT 1117
||||||||||||| || || || |||||||||||||| |||||||||||| ||| |||
Sbjct 935 TGATGAAGGAACTAGACTTCGTGAGTAGGATTTTCCGTGGAAGCGAAGATACAAA-AGGC 993
Query 1118 AGGAAACTGTTTTGGAAGTGTGAGGAGCTTATTGACAAGATTAAAGGTGGTTTGGCTGAA 1177
||||||| || |||||||||||||| ||||||||||||||||||||||| |||| |||
Sbjct 994 CGGAAACTATTCTGGAAGTGTGAGGAACTTATTGACAAGATTAAAGGTGGAATGGCGGAA 1053
Query 1178 GCAACTGCTGCCAAATTGATATTAATGTTTTTCCAAGAGATCGAATCAGACTCTGCGAAG 1237
||||| |||||||| |||||| | |||||||||||||| || |||| |||||| | |||
Sbjct 1054 GCAACAGCTGCCAAGTTGATACTGATGTTTTTCCAAGAAATTGAATTGGACTCTCCAAAG 1113
Query 1238 AGCTTTGAAAATGGAGAAGGTGGACGTTTGATGGCACCTCAGGATGCATGCAACCGAATT 1297
||| |||||| ||||||||||| | || |||||||| ||||||||||||||||||
Sbjct 1114 AGCCTTGAAAGCGGAGAAGGTGGGGGAACAATAGCACCTCAAGATGCATGCAACCGAATT 1173
Query 1298 GCTGAAGTTGTACAAG-AGACTTTGAGGAAAATGGAGATAGTGGCTGAGGAGAAGATGAG 1356
|||||||||||| ||| | || || |||||||||||||||||| |||||| |||| |||
Sbjct 1174 GCTGAAGTTGTA-AAGGAAACACTGCGGAAAATGGAGATAGTGGGTGAGGAAAAGACGAG 1232
Query 1357 AATGTTCAAGAAGGCACGCATGGCTCTTGAG-ACATGCGATAGAGAGCTCGAAGACAAAG 1415
|||| |||||| || || |||| |||||| | |||||| |||||| | ||||| ||||
Sbjct 1233 GATGTACAAGAAAGCGCGAATGGGGCTTGAGGA-ATGCGAGAGAGAGGTGGAAGAGAAAG 1291
Query 1416 CCAAGGAAGTTTCAGAACTGAAAGCA-G-AGAGGCAGAAGAAGAAACTTCAGATAGATGA 1473
| ||| |||| | |||||| | | | | |||||||||||||||||| |||||||| ||
Sbjct 1292 CAAAGCAAGTGGCGGAACTGCA-G-ATGGAGAGGCAGAAGAAGAAACAACAGATAGAAGA 1349
Query 1474 GCTAGAGAGAATCGTGAGGCTGAAGCAAGCGGAGGCAGACATGTTCCAGCTTAAA-GCAA 1532
| | ||||| || ||||||||||||||||| |||||||| ||||| ||| ||||| ||||
Sbjct 1350 GGTGGAGAGGATAGTGAGGCTGAAGCAAGCAGAGGCAGAGATGTTTCAG-TTAAAAGCAA 1408
Query 1533 ATGAAGC-AAAGCGGGAGGCTGATAGGTTGCAGAGGATTGT-ACTAGCGAA-AATGGATA 1589
| ||||| |||| || || | || || ||| |||||||||| | |||||| || ||| |
Sbjct 1409 ACGAAGCGAAAGTGGAAG-CAGAGAGATTGGAGAGGATTGTGAA-AGCGAAGAA-GGAAA 1465
Query 1590 AGTCTGAGGAGGAATACGCAAGTAACTATCT-GAAACAGAGGCTGAGTGAGGCCGAGGCA 1648
| | || ||||||||||| |||||||| || ||||| ||||||||| ||||| ||||||
Sbjct 1466 AAACAGAAGAGGAATACGCGAGTAACTA-CTTGAAACTGAGGCTGAGCGAGGCAGAGGCA 1524
Query 1649 GAGAA-GCAGTATCTGTTTGAGAAGATTAA-GCTGCAGGAAAACTCAAGGGTGGCATCAC 1706
||||| | ||||||||||||| ||||| || | ||| |||| | || ||| | |
Sbjct 1525 GAGAAAG-AGTATCTGTTTGAAAAGATAAAAGA-GCAAGAAAG-T---GG-TGG-A--A- 1573
Query 1707 AAAGCAGTGGTGGGGGAGGAGACCCGTCACAGGT-GATGATGTACTCAAAGATCCGCGAT 1765
| | |||||| ||| | |||||| | | ||||||||||||||||| | ||
Sbjct 1574 AT-G--GTGGTG----AGG---C--GTCACAAGCAG-TGATGTACTCAAAGATCAGAGAA 1620
Query 1766 CTGCTTCAAGGATACAAT-C-TCT-CT-C-CCAAG-GTTGATCCTCA-AT-TAAACGAGC 1817
||||||| ||||||||| | ||| || | ||||| || ||||| | || ||| | |||
Sbjct 1621 ATGCTTCATGGATACAATGCCTCTTCTTCGCCAAGAGTAGATCCA-AGATCTAACC-AGC 1678
Query 1818 GTAATCCTTTCAGATCCAATCC 1839
| ||||||||||||||||||||
Sbjct 1679 GAAATCCTTTCAGATCCAATCC 1700
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76142399755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5