BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48170.1

Length=729
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494871 jgi|Araly1|494871|fgenesh2_kg.8__687__AT5G48170.1          745    0.0  


> Ahg494871 jgi|Araly1|494871|fgenesh2_kg.8__687__AT5G48170.1
Length=650

 Score =  745 bits (403),  Expect = 0.0
 Identities = 467/498 (94%), Gaps = 3/498 (1%)
 Strand=Plus/Plus

Query  54   TTGGTTCACCATGTCGTCGGAGAAACGTGTAGGCATGGTCGAGAAAAGTAACAACAAGAG  113
            ||| || |||||||||  ||| ||| |  || ||||||||||||||||||||||||||||
Sbjct  3    TTGTTTAACCATGTCG--GGA-AAAAGAATAAGCATGGTCGAGAAAAGTAACAACAAGAG  59

Query  114  ACAAAGAGTGAACCAAGTTCCCGTGTTCAGCATCAACGACCACCACGACGTTCTTGTTGA  173
            |||||||||||||||||||||   |||||| |||||||||||||||||||||||||| ||
Sbjct  60   ACAAAGAGTGAACCAAGTTCCAAAGTTCAGTATCAACGACCACCACGACGTTCTTGTAGA  119

Query  174  AATCCTCCGGCGACTAGACGGTTCATCTCTCTGTTCAGCTGCATGTGTGTGCCGTCTTTG  233
            |||||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||
Sbjct  120  AATCCTCCGGCGACTAGACGGTCCATCTCTTTGCTCAGCCGCATGTGTGTGCCGTCTTTG  179

Query  234  GTCAGCCGTGGCTCGAAACGACTCTATATGGGAAGAGCTCTGTTTCCGACAAGTGTCACC  293
            ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct  180  GTCGGCCGTGGCTCGTAACGACTCTATATGGGAAGAGCTCTGTTTCCGACAAGTTTCACC  239

Query  294  ACGACCATCTTTGTCTCTTCGTTCCGTTGTGTCGGCTCTTGGTGGCTACCGATGTCTCTA  353
            |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  ACGACCTTCTTTGTCTCTTCGTTCCGTTGTGTCGGCTCTTGGTGGCTACCGATGTCTCTA  299

Query  354  CTTCCTCTGTATCCGTCCCGTCCTGGCACGACTCCCTAAGCTTCTTTGGACACGAGACCA  413
            |||||||||||||||||||||||| |||||||| |||||||||| |||||||||||||||
Sbjct  300  CTTCCTCTGTATCCGTCCCGTCCTCGCACGACTTCCTAAGCTTCGTTGGACACGAGACCA  359

Query  414  GCTTCAGCTCTCTCTGTCACTTTACTGTGTCCATTACTACGAGCGCCTCTACGTCGGCGC  473
            ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  360  GCTTCAGCTCTCTTTGTCACTTTACTGTGTTCATTACTACGAGCGCCTCTACGTCGGCGC  419

Query  474  GTGGCTTGGAGACGCGCCACCTTCGTCGCTTATATTTCTTCGGAAGCCCGTTAACGTTGT  533
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct  420  GTGGCTTGGAGACGCGCCACCTTCGTCGCTTATGTTTCTTCGGAAGCCCGTTAATGTTGT  479

Query  534  CTgaaccggaaccggaac  551
            |||||| |||||| ||||
Sbjct  480  CTGAACTGGAACCAGAAC  497


 Score =  202 bits (109),  Expect = 3e-51
 Identities = 151/170 (89%), Gaps = 8/170 (5%)
 Strand=Plus/Plus

Query  566  gaaccgtaaccggaacggCCC-TCTTTTTGTTTCTCGACGATCAATAAATTATTAGT---  621
            |||| | |||| ||||||||| | |||||||||||||||||||||||||||||||||   
Sbjct  482  GAACTGGAACCAGAACGGCCCAT-TTTTTGTTTCTCGACGATCAATAAATTATTAGTTCC  540

Query  622  -AATCTT-GTATTCTTTT-TAAAATTAATTTTTTATTCCGACTTTTATGGTTACGAAATT  678
             ||  || |||||||||| | |||||| ||||||||||||||||||| ||||||||||||
Sbjct  541  CAAGATTTGTATTCTTTTATCAAATTATTTTTTTATTCCGACTTTTACGGTTACGAAATT  600

Query  679  TCGATTTCTTCATTTCATTACAAGGTTTCATTAATAAACGTGAttttttt  728
            |||||||||||||||||||||||| ||| ||||||||||||||| |||||
Sbjct  601  TCGATTTCTTCATTTCATTACAAGATTTTATTAATAAACGTGATCTTTTT  650



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26838533568


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5