BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48180.1
Length=1395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494872 jgi|Araly1|494872|fgenesh2_kg.8__688__AT5G48180.1 1639 0.0
> Ahg494872 jgi|Araly1|494872|fgenesh2_kg.8__688__AT5G48180.1
Length=1238
Score = 1639 bits (887), Expect = 0.0
Identities = 1121/1227 (91%), Gaps = 43/1227 (4%)
Strand=Plus/Plus
Query 1 AACAATAGCCACAAAACTTTTTTCTTTCATCCTCTaaaaaaaaaTCTTTCTGGTGAGTAA 60
||||| | |||||||||||||||||||||| |||| ||||| ||||||||||||||||||
Sbjct 1 AACAACAACCACAAAACTTTTTTCTTTCATTCTCT-AAAAATAATCTTTCTGGTGAGTAA 59
Query 61 CG-----aaaaaaaTGTGTCCGGTGGAGAACAAAT-GGTTAAAGGTGGGTCAAAAAGGAG 114
|| |||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 60 CGAAAAAAAAAAAATGTGTCCGGTGGAGAACAAATGGGTT-AAGGTGGGTCAAAAAGGAG 118
Query 115 CTGGTCCTGGGGCTAGAAGCTCACATGCCATGACCGTCGTTGGGAACAAAGTTTACTGTT 174
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 119 CTGGTCCTGGGGCTAGAAGCTCACATGCCATGACCGTCGTTGGTAACAAAGTTTACTGTT 178
Query 175 TTGGTGGTGAGCTTAAGCCAACGATCCATATTGATAACGATCTTTACGTTTTCGATCTTG 234
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 179 TTGGCGGTGAGCTTAAGCCAACGATCCATATTGACAACGATCTTTACGTTTTCGATCTTG 238
Query 235 AGACTCAAGAATGGTCGATAGCTCCTGCGACCGGAGAGGCTCCTTTCCCCTGTTTTGGTG 294
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 239 AGACTCAAGAATGGTCGATAGCTCCTGCGACCGGAGACGCTCCTTTCCCCTGTTTTGGTG 298
Query 295 TCTCGATGGTAACGATCGGTTCAACGATCTATGTCTACGGTGGCCGTGACGATAAACGGA 354
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 TCTCGATGGTCACGATCGGTTCAACGATCTATGTCTACGGTGGCCGTGACGATAAAAGGA 358
Query 355 GATACAACGGTCTTCATTCGTATGATACTGAGACCAATGAGTGGAAATTGTTGGCTCCTG 414
| |||||||||||| |||||| ||| |||||||| |||||||||||||||||| |||| |
Sbjct 359 GGTACAACGGTCTTTATTCGTTTGAAACTGAGACTAATGAGTGGAAATTGTTGTCTCCGG 418
Query 415 TTGAGGAAGGGCTTCCTGGTCGTAGCTATCATTCAATGGCTGGTGATGATCGGAAAGTTT 474
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TTGAGGAAGGGCTTCCGGGTCGTAGCTATCATTCAATGGCTGGTGATGATCGGAAAGTTT 478
Query 475 ATGTGTTTGGTGGTGTTACTGCTAAAGGACGTGTGAATACGCTTCATGCGTACGATGTTG 534
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 ATGTCTTTGGTGGTGTTACTGCTAAAGGACGTGTGAATACGCTTCATGCGTACGATGTTG 538
Query 535 TTGATCAGAAATGGGTTGAGTATCCGGCGGCTGGGGAAGCTTGTAAAGGCAGAGGAGCAC 594
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TTGATCGGAAATGGGTTGAGTATCCGGCGGCTGGGGAAGCTTGTAAAGGCAGAGGAGCAC 598
Query 595 CAGGG-CTTGTGGTTGTGGAAGGGAGAATTTGGGTTTTGTTTGGGTTTGATGGTAATGAA 653
| ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 599 C-GGGACTTGTGGTTGTGGAAGGGAAAATATGGGTTTTGTTTGGGTTTGATGGTAATGAA 657
Query 654 TTGGGTGATATTCATTGTTTTGACTTGGCTAGTGAACAGTGGAAGGCTGTGGAGACTACC 713
||||||||||||||||||||||| ||||||||||| || ||||| |||||||||||||||
Sbjct 658 TTGGGTGATATTCATTGTTTTGATTTGGCTAGTGAGCAATGGAAAGCTGTGGAGACTACC 717
Query 714 GGGGATGTACCGGCGGCGAGAAGCGTGTTTCCGGCGGTTTCTTACGGGAAGTACATTGTT 773
|| ||||||||| |||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct 718 GGAGATGTACCGCCGGCGAGAAGCGTGTTTCCGGCGGTTTCGTATGGGAAATACATTGTT 777
Query 774 ATTTATGGTGGGGAGGAAGAGCCGCATGAGCTT-ATGCACATGGGAGCTGGGAAGAT-GT 831
||||||||||||||||||||||| |||||| || ||||| |||||||||||||| || |
Sbjct 778 ATTTATGGTGGGGAGGAAGAGCCACATGAG-TTGATGCATATGGGAGCTGGGAA-ATTGA 835
Query 832 CTGGAGAGGTTTATCA-GCTTGATACAGAGACGTTAGTGTGGGAGAGGATTGTGTGCGG- 889
||||||| ||||| || ||||||||||||||| ||||||||||||| ||||||| | |
Sbjct 836 CTGGAGAAGTTTA-CAAGCTTGATACAGAGACATTAGTGTGGGAGAAGATTGTG-GATGT 893
Query 890 GAATGAAGAGGAGAAGCCGAG-CCAACGTGGGTGGTGCGCGTTTACGAAAGCGGTTAAGG 948
||| || ||||||||||| || ||| || |||||||| |||||| || ||||||||||
Sbjct 894 GAACGAGGAGGAGAAGCCTAGTCCA-CGCGGGTGGTGTGCGTTTGCGGCTGCGGTTAAGG 952
Query 949 ATGGTGAGGAAGGTTTGTTGGTTCATGGTGGGAATTCTCCGACCAATGAGCGGCTTGATG 1008
|||||||||||||| |||||||||||||||| ||| ||||||||| ||| |||||||||
Sbjct 953 ATGGTGAGGAAGGTCTGTTGGTTCATGGTGGTAATAGTCCGACCAACGAGAGGCTTGATG 1012
Query 1009 ATTTGGTGTTTTGGGGTTTCTCTCATCTTAATGTCAATTAATGACTAGCTGCTTTGTGTC 1068
|||||||||||||||||||||||| ||||||||||||||||||| | | |||||||||
Sbjct 1013 ATTTGGTGTTTTGGGGTTTCTCTCGTCTTAATGTCAATTAATGAGT---TACTTTGTGTC 1069
Query 1069 TTTCGTTTATAAAGTGTTTAGTGTGT-T--GT-T-GTTTTAAGGAGTTTAAGTGGTGATG 1123
|||||||| |||| || ||||||||| | || | ||||||||||||||| |||||||||
Sbjct 1070 TTTCGTTTGTAAACTGCTTAGTGTGTGTATGTGTTGTTTTAAGGAGTTTATGTGGTGATG 1129
Query 1124 ATATGTAACTGCTAAGTGTCTGTGTTTAAGGAGCTATGTGTGGTGA-AACTTTG-CTACC 1181
|||||||||||||||||||||| | | ||||||| | ||| || |||| | |||
Sbjct 1130 ATATGTAACTGCTAAGTGTCTG-----A-G---CTATGTG-G-TGACAA-TTTGTC-ACC 1176
Query 1182 TATTCCAAATAGTTTATTAAGTTTGGT 1208
||||||||||| ||||| |||||||||
Sbjct 1177 TATTCCAAATATTTTATCAAGTTTGGT 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52145545405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5