BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48210.1

Length=728
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949224 jgi|Araly1|949224|scaffold_801111.1                        527    5e-149


> Ahg949224 jgi|Araly1|949224|scaffold_801111.1
Length=424

 Score =  527 bits (285),  Expect = 5e-149
 Identities = 347/377 (92%), Gaps = 3/377 (1%)
 Strand=Plus/Plus

Query  1    ATATCAAGATA-AAACTCAATAAATCATTCCAATTCTCTAATCAAAATGTGGAGCAACAA  59
            |||| || ||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  49   ATAT-AAAATATAAACTCAATAAATCATTCCAATTCTCTAATCAAAATGTGGACCAACAA  107

Query  60   GTTCTTCTTCCTTCTTCCAGTTGTATGCATCGTAGTGTTCGCTACTTCTCAACCATTGCC  119
            ||||||||||||||||||||||||||||||||  || ||||||||  |||| || |||||
Sbjct  108  GTTCTTCTTCCTTCTTCCAGTTGTATGCATCGCCGTATTCGCTACAGCTCAGCCGTTGCC  167

Query  120  ATCACCACAACCTTCCCAACTAGATTGTTGGTCATCACTAGAAGTTATTCCCGACTGTGT  179
            |||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||
Sbjct  168  ATCACCGCAACCTTCCCAAATAGATTGTTGGTCATCAATAGAAGTTATTCCCGACTGTGT  227

Query  180  CCCGGAAATTTTCCGATCGATAACAAATGGACAGTTCGGGAATGTAGGTCCTTCTTGCTG  239
            |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||
Sbjct  228  CCCGGAAATTTTCCGATCTATAACAAATGGACAGTTCGGGGATGTAGGTCCTTCTTGCTG  287

Query  240  CCATGCTTTTATAGGTCTCGATACTGAATGCATCCCTCAGATGTTTATCTTCGCTCCCCT  299
            |||||| ||| | ||||||||| |||| ||||||||||||||||||||||||||||| ||
Sbjct  288  CCATGCCTTT-TGGGTCTCGATGCTGATTGCATCCCTCAGATGTTTATCTTCGCTCCACT  346

Query  300  CATCCCGCCTTCTCGCAGACTCAGGGATCATTGTTCCCACAAAATAATTGTGCCATAAAC  359
            |||||| ||||| |||||||||||||||||||||||| | | |||||||||||||||| |
Sbjct  347  CATCCCTCCTTCCCGCAGACTCAGGGATCATTGTTCCAAGACAATAATTGTGCCATAATC  406

Query  360  ATTTTGAGACTTTGTTA  376
             ||||||||||| ||||
Sbjct  407  CTTTTGAGACTTCGTTA  423



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26800410651


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5