BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48220.1
Length=1493
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494873 jgi|Araly1|494873|fgenesh2_kg.8__689__AT5G48220.1 1858 0.0
Ahg357025 jgi|Araly1|357025|fgenesh1_pg.C_scaffold_8000812 845 0.0
Ahg494876 jgi|Araly1|494876|fgenesh2_kg.8__692__AT5G48230.2 113 3e-24
> Ahg494873 jgi|Araly1|494873|fgenesh2_kg.8__689__AT5G48220.1
Length=1416
Score = 1858 bits (1006), Expect = 0.0
Identities = 1254/1366 (92%), Gaps = 47/1366 (3%)
Strand=Plus/Plus
Query 33 TTGTGATTATCCGCCGCACAGAAGTCTCTCCTCCACTCCAC-AAATAGCATTCCCGGCGA 91
|||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||
Sbjct 1 TTGTGATTATCCGCCGCACAAAAGTGTCTCCTCCACTCCACAAAATAGCATTCCCGGC-- 58
Query 92 GAGACAGAGAGCGAAGAAGAAGACTCAAACCaaaaaaaaaaaTGGAAGCTGCACTGCTTT 151
||| ||||||| | ||||||||||| || ||||||||||||| ||| ||| ||
Sbjct 59 GAG--AGAGAGC---CACGAAGACTCAAA--AAGAAAAAAAATGGAA---GCAATGCGTT 108
Query 152 CTCTTCAGC-CCTTCCCTTCCTCCGCCACTCAACGACGTCTCTCTCCGTTTAACCTCCAC 210
||||||||| | ||||| |||||||||| ||||||||| ||||||| ||||||| |||||
Sbjct 109 CTCTTCAGCACTTTCCC-TCCTCCGCCATTCAACGACGGCTCTCTCAGTTTAACATCCAC 167
Query 211 AATACACTTACCAGACCTTCTTCTTATGC-TCCTCTTCGTGCTCAAAAGTCTGGAATCAC 269
||| |||||||||||| ||||||| | | ||||||||||||||||||||||||||||||
Sbjct 168 GATAAACTTACCAGACCCTCTTCTTGT-CTTCCTCTTCGTGCTCAAAAGTCTGGAATCAC 226
Query 270 AGAAGGTTCTGATTCAGCATTAGAG-GCTAAAG-TAAGTGAGCAAGAAGTGGGAATGTAC 327
|||||||| | | || | || | || ||| | ||||| ||||||||||| ||||||
Sbjct 227 TGAAGGTTCCGGTAAAG--TAAGTGATCTCAAGATTAGTGAACAAGAAGTGGGGATGTAC 284
Query 328 CAGAATGAAGTAGTTGAGAGTCAAGGTATAAGGATAAGGAGAAGACCACCTACTGGACCT 387
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 285 CAGAATGAAGTAGTTGAGAGTCAGGGTATTAGGATAAGGAGAAGACCACCTACTGGACCT 344
Query 388 CCATTGCATTACGTTGGACCTTTTGAGTTCCGGCTTCAGAACGAGGGAAACACGCCTCGT 447
|||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||
Sbjct 345 CCATTGCATTACGTTGGACCTTTTGAGTTCCGCCTCCAGAACGAGGGTAACACGCCTCGT 404
Query 448 AACATCTTGGAAGAGATCGTATGGCACAAGGATAAAGAAGTTGCTCAGATGAAAGAGAGA 507
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AATATCTTGGAAGAGATCGTATGGCACAAGGATAAAGAAGTTGCTCAGATGAAAGAGAGG 464
Query 508 AAGCCTCTTTATAGCTTGAAGAAGGCTCTTGATAATGTTCCTCCTGCTAAAGACTTCATT 567
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 AAGCCTCTTTATACCTTGAAGAAGGCTCTTGATAATGTTCCTCCTGCTAAAGACTTCATT 524
Query 568 GGTGCTCTTAGATCGGCTCACCAAAGAACGGGGTTGCCTGGTTTAATAGCTGAGGTTAAG 627
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 525 GGTGCTCTTAGATCAGCTCATCAAAGAACGGGGTTGCCTGGTTTAATAGCTGAGGTTAAG 584
Query 628 AAAGCTTCTCCAAGTAGAGGAATCCTGAGAGAGGATTTTAACCCTGTTGAAATTGCACAA 687
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 585 AAAGCTTCTCCAAGCAGAGGAATCCTGAGAGAGGATTTTAACCCGGTTGAAATTGCACAA 644
Query 688 GCTTATGAGAAGGGGGGAGCAGCATGTCTTAGTGTTTTGACAGATGACAAATACTTCAAG 747
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GCTTATGAGAAGGGTGGAGCAGCATGTCTTAGTGTTTTGACAGATGACAAATACTTCAAG 704
Query 748 GGAAGCTATGAGAACCTGCAAGCTATAATGGAAGCTGGTGTGAAGTGCCCTTTGCTATTG 807
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct 705 GGAAGCTATGAGAACCTGCAAGCTATAAGGGAAGCTGGTGTAAAGTGCCCTTTGCTATTG 764
Query 808 AAAGAGTTCATTGTTGAGGCATGGCAGATATACTATGGTAGAAGTAAAGGCGCAGATGCA 867
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 765 AAAGAGTTCATTGTTGAGGCATGGCAGATATACTATGGTAGAAGTAAAGGCGCAGATGCA 824
Query 868 GTTTTGTTGATCGCTTCTGTGTTACCTGACCTTGACATCAAATACATGATTAAGATTTGC 927
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 825 GTTTTGTTGATCGCTTCTGTGTTACCTGACCTTGACATCAAATACATGATTAAGATTTGC 884
Query 928 AAAATACTTGGAA-TGGCTACACTTGTGGAGGTCCATGACGAAAGGGAGATGGATCGTGT 986
|||||||| | || ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 885 AAAATACT-GAAAATGGCTACACTTGTGGAGGTTCATGACGAAAGGGAGATGGATCGTGT 943
Query 987 TCTTGCAATTGAAGGAGTCGAGCTCATTGGCATCAATAACCGTAACCTTGAAACATTTGA 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 944 TCTTGCAATTGAAGGAGTCGAGCTCATTGGCATCAATAACCGTAACCTTGAAACATTTGA 1003
Query 1047 GGTAGATCTTGGTATCACAAAGAAGCTACTTGAGGGAGAGCGTGGCGAACTGATCCGTCA 1106
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1004 GGTAGATCTTGGTATCACAAAGAAGCTACTTGAGGGAGAGCGTGGCGAATTGATCCGTCA 1063
Query 1107 AAAAGACATCCTTGTGGTTGGAGAATCTGGGTTATTCACTCCCGAAGATATCGCCTTTGT 1166
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1064 AAAAAACATCCTTGTGGTTGGAGAATCTGGGTTATTCACTCCCGAAGATATTGCCTTTGT 1123
Query 1167 TCAAGAAGCCGGTGTCAAAGCAGTTTTAGTCGGCGAATCTCTTATTAAACAAAGCGATCC 1226
|||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||
Sbjct 1124 TCAAGAAGCCGGCGTCAAAGCAGTTCTAGTCGGTGAATCTCTTATTAAACAAAGTGATCC 1183
Query 1227 CGGGAAGGCAATCAGCACCCTATTTGGAAGAGATGTCTCAGAGTAAATTCCGAGTAGAAA 1286
||||||||||||||| |||| |||||||||||| |||| | |||||||||
Sbjct 1184 GGGGAAGGCAATCAGCTCCCTTTTTGGAAGAGATATCTC----------C-GAGTAGAAA 1232
Query 1287 CTTTTTGTATAGAGAAAATCTTCATTGAAGTCTCt-tt----t-t-ttCTTCTTAAG--T 1337
||||||||||||||||||||||||||| ||||| || | | ||||| |||| |
Sbjct 1233 CTTTTTGTATAGAGAAAATCTTCATTGC-GTCTCCATTGAAGTCTCTTCTTTTTAAAAAT 1291
Query 1338 GCCGCTCAAGTGCGCAGAGG-CTTGT-GCCTTTACAGAAATGTCCA 1381
||||||||| |||| || ||| | |||||||||||||||||||
Sbjct 1292 AATGCTCAAGTGTGCAG-GGACTTTTTGCCTTTACAGAAATGTCCA 1336
Score = 106 bits (57), Expect = 5e-22
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand=Plus/Plus
Query 1405 CATACACATTGTGTACTT-AAATTTATCCATCAAATGTCAAATCTTGGTCGACGTTTTAA 1463
||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1335 CATGCACATTGTGTACTTAAAATTTAGCTATCAAATGTCAAATCTTGGTCGACGTTTCAA 1394
Query 1464 TGAGTACATGAGGATAAATCAT 1485
| | |||||||| |||||||||
Sbjct 1395 TCAATACATGAGAATAAATCAT 1416
> Ahg357025 jgi|Araly1|357025|fgenesh1_pg.C_scaffold_8000812
Length=642
Score = 845 bits (457), Expect = 0.0
Identities = 574/627 (92%), Gaps = 22/627 (4%)
Strand=Plus/Plus
Query 142 GCACTGCTTTCTCTTCAGC-CCTTCCCTTCCTCCGCCACTCAACGACGTCTCTCTCCGTT 200
||| ||| ||||||||||| | ||||| |||||||||| ||||||||| ||||||| |||
Sbjct 7 GCAATGCGTTCTCTTCAGCACTTTCCC-TCCTCCGCCATTCAACGACGGCTCTCTCAGTT 65
Query 201 TAACCTCCACAATACACTTACCAGACCTTCTTCTTATGC-TCCTCTTCGTGCTCAAAAGT 259
|||| ||||| ||| |||||||||||| ||||||| | | ||||||||||||||||||||
Sbjct 66 TAACATCCACGATAAACTTACCAGACCCTCTTCTTGT-CTTCCTCTTCGTGCTCAAAAGT 124
Query 260 CTGGAATCACAGAAGG-T--TCTGATTCAGCA-T------T--AG--AG-G--CTAAAG- 301
|||||||||| ||||| | |||||||| ||| | | || || | || |||
Sbjct 125 CTGGAATCACTGAAGGTTCCTCTGATTCGGCATTGGAGGGTAAAGTAAGTGATCTCAAGA 184
Query 302 TAAGTGAGCAAGAAGTGGGAATGTACCAGAATGAAGTAGTTGAGAGTCAAGGTATAAGGA 361
| ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 185 TTAGTGAGCAAGAAGTGGGGATGTACCAGAATGAAGTAGTTGAGAGTCAGGGTATTAGGA 244
Query 362 TAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGGC 421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 245 TAAGGAGAAGACCACCTACTGGACCTCCATTGCATTACGTTGGACCTTTTGAGTTCCGCC 304
Query 422 TTCAGAACGAGGGAAACACGCCTCGTAACATCTTGGAAGAGATCGTATGGCACAAGGATA 481
| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 305 TCCAGAACGAGGGTAACACGCCTCGTAATATCTTGGAAGAGATCGTATGGCACAAGGATA 364
Query 482 AAGAAGTTGCTCAGATGAAAGAGAGAAAGCCTCTTTATAGCTTGAAGAAGGCTCTTGATA 541
||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 365 AAGAAGTTGCTCAGATGAAAGAGAGGAAGCCTCTTTATACCTTGAAGAAGGCTCTTGATA 424
Query 542 ATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCACCAAAGAACGGGGT 601
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 425 ATGTTCCTCCTGCTAAAGACTTCATTGGTGCTCTTAGATCGGCTCATCAAAGAACGGGGT 484
Query 602 TGCCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGTAGAGGAATCCTGAGAGAGG 661
| |||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||
Sbjct 485 TACCTGGTTTAATAGCTGAGGTTAAGAAAGCTTCTCCAAGCAGAGGCATCCTTAGAGAGG 544
Query 662 ATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGGGGAGCAGCATGTCTTAGTG 721
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 545 ATTTTAACCCTGTTGAAATTGCACAAGCTTATGAGAAGGGTGGAGCAGCATGTCTTAGTG 604
Query 722 TTTTGACAGATGACAAATACTTCAAGG 748
||||||||||||||||||||||| |||
Sbjct 605 TTTTGACAGATGACAAATACTTCCAGG 631
> Ahg494876 jgi|Araly1|494876|fgenesh2_kg.8__692__AT5G48230.2
Length=1685
Score = 113 bits (61), Expect = 3e-24
Identities = 80/89 (90%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 1405 CATACACATTGTGTACTT-AAATTTATCCATCAAATGTCAAATCTTGGTCGACGTTTTAA 1463
||| |||||||||||||| ||||||| | |||||||||||||||||||||||||||| ||
Sbjct 1685 CATGCACATTGTGTACTTAAAATTTAGCTATCAAATGTCAAATCTTGGTCGACGTTTCAA 1626
Query 1464 TGAGTACATGAGGATAAATCATTAACTAC 1492
| |||||||||| ||||||||| | ||||
Sbjct 1625 TCAGTACATGAGAATAAATCATCATCTAC 1597
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55878389415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5