BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48230.2
Length=1866
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494876 jgi|Araly1|494876|fgenesh2_kg.8__692__AT5G48230.2 2364 0.0
Ahg494873 jgi|Araly1|494873|fgenesh2_kg.8__689__AT5G48220.1 106 7e-22
> Ahg494876 jgi|Araly1|494876|fgenesh2_kg.8__692__AT5G48230.2
Length=1685
Score = 2364 bits (1280), Expect = 0.0
Identities = 1472/1559 (94%), Gaps = 35/1559 (2%)
Strand=Plus/Plus
Query 276 ATTCGGCGCTCTCTTCTGGAATTGAAGAATCAAGATTAGCAATGGCCCATACATCAGAAT 335
||||| ||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 157 ATTCGTCGCTCTCTTCTGGAATTGAAGTGTCAAGATTAGTAATGGCCCATACATCAGAAT 216
Query 336 CTGTGAATCCTAGAGATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTC 395
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 217 CTGTGAAGCCTAGAGATGTTTGCATTGTGGGTGTTGCACGTACTCCAATGGGTGGCTTTC 276
Query 396 TCGGATCTCTTTCATCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGCTGCTT 455
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 277 TTGGATCTCTTTCGTCTTTACCTGCCACAAAGCTTGGATCTTTAGCTATTGCAGCTGCTT 336
Query 456 TGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTCTTTGGCAATGTTCTTA 515
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 337 TGAAGAGAGCAAATGTTGATCCAGCTCTTGTTCAAGAAGTTGTTTTTGGCAATGTTCTTA 396
Query 516 GTGCTAATTTGGGTCAAGCTCCTGCTCGTCAAGCTGCTTTAGGTGCAGGAATCCCTAACT 575
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 397 GTGCTAATTTGGGTCAAGCTCCTGCTCGTCAGGCTGCTTTAGGTGCAGGAATCCCTAACG 456
Query 576 CTGTTATCTGTACTACAGTTAACAAGGTTTGTGCATCAGGCATGAAAGCGGTAATGATTG 635
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 457 CTGTTATCTGTACTACAGTTAACAAAGTTTGTGCATCAGGCATGAAAGCGGTAATGATTG 516
Query 636 CTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGGAAAGCA 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 517 CTGCTCAAAGTATCCAGTTAGGGATCAATGATGTAGTTGTGGCGGGTGGTATGGAAAGCA 576
Query 696 TGTCTAATACACCAAAATATTTGGCAGAAGCAAGGAAGGGATCTCGTTTTGGTCATGATT 755
||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||||
Sbjct 577 TGTCTAATACACCTAAATATTTAGCAGAAGCAAGGAAAGGATCTCGATTTGGTCATGATT 636
Query 756 CTTTAGTAGATGGAATG-TTGAAGGATGGACTATGGGATGTCTATAACGACTGTGGGATG 814
||||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||
Sbjct 637 CTTTAGTAGATGGAATGCTT-AAGGATGGACTATGGGATGTCTATAATGACTGTGGGATG 695
Query 815 GGAAGCTGTGCAGAATTATGCGCTGAGAAGTTTCAGATTACAAGGGAGCAGCAAGATGAC 874
||||| ||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 696 GGAAGTTGTGCAGAATTATGCGCTGAGAAGTTTGAGATTACAAGAGAGCAGCAAGATGAC 755
Query 875 TATGCAGTTCAGAGTTTTGAGCGTGGTATTGCTGCCCAGGAAGCTGGCGCCTTCACATGG 934
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 TATGCAGTTCAGAGTTTTGAGCGTGGTATTGCTGCCCAGGAAGCTGGCGCCTTCACATGG 815
Query 935 GAAATCGTCCCGGTTGAAGTTTCTGGAGGAAGAGGTAGGCCATCAACCATTGTTGACAAG 994
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 816 GAAATCGTCCCGGTTGAAGTTTCTGGAGGAAGAGGTAGGCCATCAACCATTGTTGACAAG 875
Query 995 GACGAAGGTCTTGGGAAGTTTGATGCTGCAAAATTGAGGAAACTCCGTCCTAGTTTCAAA 1054
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 876 GACGAAGGTCTTGGGAAGTTTGATGCTGCCAAATTGAGGAAACTCCGTCCTAGTTTCAAA 935
Query 1055 GAGAATGGAGGGACTGTTACAGCTGGAAATGCGTCTAGCATAAGTGATGGTGCAGCTGCC 1114
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 936 GAGAATGGAGGGACTGTTACAGCAGGAAATGCGTCTAGCATAAGTGATGGTGCAGCTGCC 995
Query 1115 CTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCTAGTATTAGCAAAAATT 1174
||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 996 CTTGTCCTAGTGAGCGGAGAGAAGGCTCTTCAGCTAGGACTTCAAATATTAGCAAAAATT 1055
Query 1175 AAAGGGTATGGTGACGCAGCTCAGGAACCAGAGTTTTTCACTACTGCTCCTGCTCTTGCT 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 AAAGGGTATGGTGACGCAGCTCAGGAACCAGAGTTTTTCACTACTGCTCCTGCTCTTGCT 1115
Query 1235 ATACCAAAAGCCATTGCACATGCTGGTTTGGAATCTTCTCAAGTTGATTACTATGAGATC 1294
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||
Sbjct 1116 ATACCAAAAGCCATTGCACATGCTGGTTTGGAATTTTCTCAAGTTGATTACTACGAGATC 1175
Query 1295 AATGAAGCATTTGCAGTTGTAGCACTTGCAAATCAAAAGCTACTCGGGATTGCTCCAGAG 1354
|||||||||||||||||||||||||||||||||||||||||| | |||||| |||| |||
Sbjct 1176 AATGAAGCATTTGCAGTTGTAGCACTTGCAAATCAAAAGCTATTAGGGATTTCTCCGGAG 1235
Query 1355 AAAGTGAACGTAAATGGAGGAGCTGTCTCCTTAGGACACCCTCTAGGCTGCAGTGGCGCC 1414
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 1236 AAAGTGAACGTAAATGGAGGAGCTGTCTCCTTGGGACATCCTCTGGGCTGCAGTGGCGCC 1295
Query 1415 CGTATTCTAATCACGTTGCTTGGGATACTAAAGAAGAGAAACGGAAAGTACGGTGTGGGA 1474
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 CGTATTCTAATCACATTGCTTGGGATACTAAAGAAGAGAAACGGAAAGTACGGTGTGGGA 1355
Query 1475 GGAGTGTGCAACGGAGGAGGAGGTGCTTCTGCTCTAGTTCTTGAGCTCCTTTGATGCATT 1534
||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1356 GGAGTGTGCAATGGAGGAGGAGGTGCTTCTGCTCTTGTTCTTGAACTCCTTTGATGCATT 1415
Query 1535 ATGAATCCAGGTTGGTAAACTAAATAGATGGATCTATCTCTCATCCAACTTCCATGAGTC 1594
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 1416 ATGAATTCAGGTTGGTAAACTAAATAGATGGATCTATCTCTCTTCCAACTTCCAAGAGTC 1475
Query 1595 AGTCATTGCACTTTACGTTTTATGTTAGTTGG-TCTCTCAATAAAGGAGTGATCGTTGAT 1653
||| |||||| || | |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1476 AGTAATTGCAGTTCAAGTTTTATGTTAGTTGGGTCTCTCAATAAAGGAGTGATCGTTGAT 1535
Query 1654 GTTGTTAAGTCTATTTATTTATATGAACTCGGCTTCtttttttCT--CTTACCGGTGACA 1711
||| |||||||||||||||||||||||| |||||||||||| | ||| | |||||||
Sbjct 1536 GTT---AAGTCTATTTATTTATATGAACTCAGCTTCTTTTTTTTTTTCTTTCTGGTGACA 1592
Query 1712 GTCAGTTATTGAATCATGGACCGATTTACCGTAGTTAATGATTTATCCTCATGTACTCAT 1771
|||||| | || | | | | | | || | ||| | ||||||||| ||
Sbjct 1593 GTCAGT-A--GA-T---G-A----T-----G-A-TT--T-ATT---C-TCATGTACTGAT 1626
Query 1772 TAAAACGTCGACCAAGATTTGACATTTGATGGATAAATTT-AAGTACACAATGTGTATG 1829
| |||||||||||||||||||||||||||| | ||||||| |||||||||||||| |||
Sbjct 1627 TGAAACGTCGACCAAGATTTGACATTTGATAGCTAAATTTTAAGTACACAATGTGCATG 1685
Score = 230 bits (124), Expect = 4e-59
Identities = 148/160 (93%), Gaps = 0/160 (0%)
Strand=Plus/Plus
Query 87 ttttGAAAGACAGATCATATAGCAGTCGTGTTGCTCTTCATCGTAGTTATCGTCGCTGAT 146
||| ||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TTTAGAAGGACAGATCACATAGCCGTCGTGTTGCTCTTCATCGTAGTTATCGTCGCTGAT 60
Query 147 TCACCAACAACAACAACATCACAAGAAAGCGTCCTCTTTTATAGGACCCTCTGTCCCTGT 206
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || | |
Sbjct 61 TCACCAACGACAACAACATCACAAGAAAGCGTCCTCTTTTATAGGACCCTCTCTCTGTCT 120
Query 207 TTCTCTCTCCAGTTTTATTGTAGAATTCGCTGTCATTTTC 246
|||||||||||||| |||||||||||||| |||||| |||
Sbjct 121 TTCTCTCTCCAGTTATATTGTAGAATTCGTTGTCATATTC 160
> Ahg494873 jgi|Araly1|494873|fgenesh2_kg.8__689__AT5G48220.1
Length=1416
Score = 106 bits (57), Expect = 7e-22
Identities = 74/82 (90%), Gaps = 1/82 (1%)
Strand=Plus/Minus
Query 1749 ATGATTTATCCTCATGTACTCATTAAAACGTCGACCAAGATTTGACATTTGATGGATAAA 1808
||||||||| |||||||| | ||| |||||||||||||||||||||||||||| | ||||
Sbjct 1416 ATGATTTATTCTCATGTATTGATTGAAACGTCGACCAAGATTTGACATTTGATAGCTAAA 1357
Query 1809 TTT-AAGTACACAATGTGTATG 1829
||| |||||||||||||| |||
Sbjct 1356 TTTTAAGTACACAATGTGCATG 1335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70086050800
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5