BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48240.3
Length=1251
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494878 jgi|Araly1|494878|fgenesh2_kg.8__694__AT5G48240.1 1339 0.0
> Ahg494878 jgi|Araly1|494878|fgenesh2_kg.8__694__AT5G48240.1
Length=991
Score = 1339 bits (725), Expect = 0.0
Identities = 805/841 (96%), Gaps = 15/841 (2%)
Strand=Plus/Plus
Query 1 TCGTCTCTTCTCCCCCAAACTCTCGCCGCCGTGATAACCCAAAGTTCTCGACGAAGCCAT 60
|||||||||||| ||||||||||||||||||||| |||||||| || |||||||| ||||
Sbjct 1 TCGTCTCTTCTCTCCCAAACTCTCGCCGCCGTGAAAACCCAAATTTATCGACGAAACCAT 60
Query 61 GTCTACCGGAGAAGAAGGTCACATGGCGATGGCAGATAGAGGCTCTAGAAAGAGAAGAGT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTCTACCGGAGAAGAAGGTCACATGGCGATGGCAGATAGAGGCTCTAGAAAGAGAAGAGT 120
Query 121 CGGCGTTAAGAAAGGTACTAAAGCGGCGAGGAACAAAAAGCAAAAATCAAAACCTTCTAC 180
|||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 121 CGGCGTAAAGAAAGGTACTAAAGCGGCGAGGAACAAAAAGTTAAAATCAAAACCGTCTTC 180
Query 181 TTCCGATAGGTTTAAGGTTACAATGAAGAATCAAAAGCTATTTCAGAAGAGAGCACGAGA 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTCCGATAGGTTTAAGGTTACAATGAAGAATCAAAAGCTATTTCAGAAGAGAGCACGAGA 240
Query 241 TTACAATTCCGATGACGATGAAGAAGAAGATGATGAATCGAAGAAACAACCAGAAGTAAC 300
||||||||||||||| | ||||||| | | || ||||||||||||||||||||||||||
Sbjct 241 TTACAATTCCGATGA--A-GAAGAAG-A-A-GACGAATCGAAGAAACAACCAGAAGTAAC 294
Query 301 AATTCGTGAGAAGATCTTCTCTGATGCTAACATGGGACCAAATTACGAAGAGATTG--G- 357
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 295 AATTCGTGAGAAGATCTTCTCTGATGCTAACATGGGACCAAATTACGAAGAAATTGAAGA 354
Query 358 AG-A-A----GAAGATAATGATGAGAATTCAGATGGTGAAGATCATGGAGAGATTGAATC 411
|| | | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 355 AGAAGATGGTGAAGATAATGATGAGAATTCAGATGGTGAAGATCATGGAGAGATTGAATC 414
Query 412 TGGAATCACTAAGTTTGCTACTGATGGATGTAATGCTTTCAAAATCGCTTTTAAAGCTAT 471
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 415 TGGAATCACTAAGTTTGCTACTGATGGATGTAATGCTTTTAAAATCGCTTTTAAAGCTAT 474
Query 472 TATGAAGAAGACTAAAGGAGATGATACATTGGGCCCAGTTTTATCAGCACATAAGCATCT 531
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 475 TATGAAGAAGACTAAAGGAGATGATACATTGGGTCCAGTTTTATCAGCACATAAGCATCT 534
Query 532 TATTGGAGAGAAGCTAGCTGAAGATGAAGCTGAAAAGAAAGCTAAAGGTCAAGCTAGAAA 591
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 535 TATTGGAGAGAAGCTAGCTGAAGAGGAAGCTGAAAAGAAAGCTAAAGGTCAAGCTAGAAA 594
Query 592 GGCTAAACATTTGATTGCTGAGAAGGGACATGTTAAACCTGGAAGTTATTTGGATTCTCA 651
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 595 GGCTAAACATTTGATTGCTGAGAAAGGACATGTTAAACCTGGAAGTTATTTGGATTCTCA 654
Query 652 TGAAAAGATTCTTATTGGTGTTGCTACTAAAGGAGTGGTCAAGCTTTTCAATGCTGTCAA 711
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 655 TGAAAAGATTCTTATTGGTGTTGCTACTAAAGGAGTGGTCAAGCTTTTCAATGCTGTAAA 714
Query 712 CAAGGCTCAACATGCTCAGAAGGGTTTGAATCCTTCAAGGTCTAAAGACGCTAAAGTGCT 771
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 715 CAAGGCTCAACATGCTCAGAAGGGTTTGAATCCTTCTAGGTCTAAAGACGCTAAAGTGCT 774
Query 772 GAAGAAGCGAAGAAAAGAAGCATTCTTGTCTGAGTTAGGGAAAACAAAAACAGACACCAA 831
||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||
Sbjct 775 GAAGAAGCGAAGAAAAGAAGCATTCTTCTCTGAGTTAGGGAAAACAAAAACAGACAACAA 834
Query 832 G 832
|
Sbjct 835 G 835
Score = 228 bits (123), Expect = 9e-59
Identities = 147/158 (93%), Gaps = 4/158 (3%)
Strand=Plus/Plus
Query 974 GCTCACAAATCTGAAGACGAAGCTCCTGTTTGGGCTCCTCTACGAGATAATTACATGTTA 1033
||||| ||||| |||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 836 GCTCAAAAATCCGAAGACGAAGCTCCTGCTTGGGCTCCTCTACGAGATAATTACATGTTA 895
Query 1034 GCAAACCCAAAACTGAAGGACTGGGACAAGAAAC-AGGAAACAAGCG-AGGGAGATGATT 1091
||||||||||| ||||||||||||||||| |||| ||||||||| || ||||||||||||
Sbjct 896 GCAAACCCAAAGCTGAAGGACTGGGACAA-AAACCAGGAAACAA-CGGAGGGAGATGATT 953
Query 1092 TTGCCGGTTTGTCAGGAGATGAAAGTTATGAAGACTGA 1129
|||||| | ||||||||||||||||||| |||||||||
Sbjct 954 TTGCCGCTATGTCAGGAGATGAAAGTTACGAAGACTGA 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46738696242
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5