BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48250.1
Length=1704
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949231 jgi|Araly1|949231|scaffold_801118.1 1759 0.0
Ahg357028 jgi|Araly1|357028|fgenesh1_pg.C_scaffold_8000815 905 0.0
Ahg478095 jgi|Araly1|478095|fgenesh2_kg.3__796__AT3G07650.3 350 3e-95
> Ahg949231 jgi|Araly1|949231|scaffold_801118.1
Length=1181
Score = 1759 bits (952), Expect = 0.0
Identities = 1100/1169 (94%), Gaps = 20/1169 (2%)
Strand=Plus/Plus
Query 176 TTGAAAGATGGGTTATATGTGTGATTTCTGTGGTGAACAAAGATCAATGGTGTATTGTCG 235
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 14 TTGAAAGATGGGTTATATGTGTGATTTCTGTGATGAACAAAGATCAATGGTGTATTGTCG 73
Query 236 ATCTGATGCAGCGTGTTTGTGTCTTTCGTGTGACCGTAATGTTCATTCTGCTAATGCTCT 295
|||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct 74 GGCTGATGCAGCATGTTTGTGTCTCTCGTGTGACCGTAGTGTTCATTCTGCTAATGCTTT 133
Query 296 ATCGAAACGTCATTCGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCTTCTGT 355
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 134 ATCGAAACGTCATTCGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCATCTGT 193
Query 356 CCGGTGTAGTGATGAGAGGGTTTCTCTATGTCAAAACTGTGATTGGTCAGGCCATGACGG 415
|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 194 TCGGTGTAGCGATGAGAGGGTTTCTCTATGTCAAAACTGTGATTGGTTAGGCCATGACGG 253
Query 416 CAAGAA-T-T-CTACTACTACTTCACATCATAAAAGGCAAACCATCAATTGTTATTCTGG 472
||||| | | |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 254 AAAGAATTCTACTACTACTACTTCACATCATAACAGGCAAACCATCAATTGTTATTCTGG 313
Query 473 TTGTCCCTCGAGTGCCGAATTATCCTCGATATGGTCTTTCTGTATGGATTTGAATATCTC 532
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 314 TTGTCCCTCGAGTGCCGAATTATCCTCGATATGGTCTTTCTTTATGGATTTGAATATCTC 373
Query 533 TTCTGCTGAAGAATCCGCTTGTGAGCAAGGAATGGGTTTGATGACTATAGATGAAGATGG 592
|||| ||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 374 TTCTTCTGGAGAATCTGCTTGTGAGCAAGGAATGGGTTTGATGACTATAGATGAAGATGG 433
Query 593 CACAGGAGAAAAATCTGGTGTCCAAAAAATTAATGTAGAACAGCCTGAAACCAGTTCGGC 652
||||||||||||| | ||||||| ||| |||||||||| ||||||||||||||||| ||
Sbjct 434 CACAGGAGAAAAACCAGGTGTCCCAAATGTTAATGTAGATCAGCCTGAAACCAGTTCAGC 493
Query 653 TGCACAAGGTATGGATCACTCTAGTGTTCCAGAAAATTCATCAATGGCTAAGGAGCTTGG 712
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 494 TGCACAAGGTATGGATCACTCTAGTGTTCCAGAAAATTCATCATTGGCTAAGGAGCTTGG 553
Query 713 AGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTGGCTCTTGA 772
|||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 554 AGTATGCGAGGATGACTTTAATGGAAATCTCATTACAGATGAAGTAGACTTGGCTCTTGA 613
Query 773 GAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTCGAGCACGG 832
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 614 GAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTCGAACACGG 673
Query 833 TGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCTCAA------------- 879
|||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 674 AGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCCTGAGGGCTCAAACAAAGGAAACGA 733
Query 880 --TGCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAAC 937
|||||||||| || ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 734 AATGCAGCAGCCTGCCGTAAACAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAAC 793
Query 938 CGAGCCAATAATTTGCTATTCATCAAAGCC-AGCACATTCGAATATCTCCTTCTCTGGCA 996
||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||
Sbjct 794 GGAGCCAATAATTTGCTATTCATCAAAGCCTA-CTCATTCGAATATATCCTTCTCTGGCA 852
Query 997 TCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGATGAAGCAGC 1056
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 853 TCACGGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCATCATCGATGAAGCAGC 912
Query 1057 TTTCAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGCTTCCTCAC 1116
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 913 TTTTAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGCTTCCTCAC 972
Query 1117 ATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCTCGCAAGT 1176
|||| ||||||||||| || ||||||||||| ||||||||||||||||||||||||||||
Sbjct 973 ATGCCACAACACGTAACAATGCTGTTATGCGCTACAAGGAAAAGAAGAAGGCTCGCAAGT 1032
Query 1177 TTGACAAGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGA 1236
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TTGACAAGCGAGTGAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGA 1092
Query 1237 AAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGATGAGCCCAACAAGAA 1296
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1093 AAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCAATGAGCCCAACAAGAA 1152
Query 1297 GCTACTGAGGATAAAACCTCAAAACAATG 1325
|||||||||||||| ||| ||||||||||
Sbjct 1153 GCTACTGAGGATAAGACCCCAAAACAATG 1181
> Ahg357028 jgi|Araly1|357028|fgenesh1_pg.C_scaffold_8000815
Length=792
Score = 905 bits (490), Expect = 0.0
Identities = 577/616 (94%), Gaps = 17/616 (3%)
Strand=Plus/Plus
Query 705 GAGCTTGGAGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTG 764
|||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 178 GAGCTTGGAGTATGCGAGGATGACTTTAATGGAAATCTCATTACAGATGAAGTAGACTTG 237
Query 765 GCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTC 824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 GCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTC 297
Query 825 GAGCACGGTGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCT-------- 876
|| ||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 298 GAACACGGAGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCCTGAGGGCTCAAACAAA 357
Query 877 -----C--AATGCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACT 929
| |||||||||||| || ||| |||||||||||||||||||||||||||||||
Sbjct 358 GGAAACGAAATGCAGCAGCCTGCCGTAAACAATAATGCATCTGCAGATTCGTTCATGACT 417
Query 930 TGTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCC-AGCACATTCGAATATCTCCTT 988
|||||||| ||||||||||||||||||||||||||||| | | ||||||||||| |||||
Sbjct 418 TGTAGAACGGAGCCAATAATTTGCTATTCATCAAAGCCTA-CTCATTCGAATATATCCTT 476
Query 989 CTCTGGCATCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGAT 1048
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 477 CTCTGGCATCACGGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCATCATCGAT 536
Query 1049 GAAGCAGCTTTCAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGC 1108
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 537 GAAGCAGCTTTTAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGC 596
Query 1109 TTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGC 1168
|||||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||
Sbjct 597 TTCCTCACATGCCACAACACGTAACAATGCTGTTATGCGCTACAAGGAAAAGAAGAAGGC 656
Query 1169 TCGCAAGTTTGACAAGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACG 1228
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 TCGCAAGTTTGACAAGCGAGTGAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACG 716
Query 1229 GCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGATGAGCCC 1288
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 717 GCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCAATGAGCCC 776
Query 1289 AACAAGAAGCTACTGA 1304
||||||||||||||||
Sbjct 777 AACAAGAAGCTACTGA 792
> Ahg478095 jgi|Araly1|478095|fgenesh2_kg.3__796__AT3G07650.3
Length=1703
Score = 350 bits (189), Expect = 3e-95
Identities = 495/634 (78%), Gaps = 56/634 (9%)
Strand=Plus/Plus
Query 699 GCTAAGGA-GCTTGGAGTATGTGAGGATGACTTCAATGGAAATC-TCATTTCAGATGAAG 756
|||||||| | ||||||| ||||| ||||||||| | || || | | | | |||||||
Sbjct 670 GCTAAGGATG-TTGGAGTCTGTGAAGATGACTTCTACGGGAACCTTGGTAT-GGATGAAG 727
Query 757 TAGACTTGGCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAG-A 815
| ||| |||| ||||||||||||||||| ||||||||| | ||||| ||| | || | |
Sbjct 728 TTGACATGGCACTTGAGAACTATGAAGAGCTCTTTGGTACCGCCTTTAACCCCTC-GGAA 786
Query 816 TATCTCTTCGAGCACGGTGGAATTGGA-AGTCTTTT-C-G-AG----AAAGATGAAGCT- 866
| || || | ||| ||||||| | || |||||||| | | || ||| | |||||
Sbjct 787 GAGCTATTTGGGCATGGTGGAA-TCGATAGTCTTTTCCAGAAGCACCAAACA-AAAGCTC 844
Query 867 CATGAGGG-CTCAA-T-GCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTC 923
|| ||||| || | | ||| ||||| | ||| | | | | |||||||||
Sbjct 845 CA-GAGGGAGGGAATTCGGTGCATCCAGC--T-GGCAGT-A---A--T---GATTCGTTC 891
Query 924 ATGACTT-GTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCCAGCACATTCGAATAT 982
|||| || | | ||| ||||||||||||||||| |||| ||||||||||||||||| ||
Sbjct 892 ATGAGTTCG-AAAACTGAGCCAATAATTTGCTACACATCGAAGCCAGCACATTCGAACAT 950
Query 983 CTCCTTCTCTGGCA-TCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGT 1041
|| |||||||| | ||||||||||||||| |||||||||||||||||| ||||| || |
Sbjct 951 ATCGTTCTCTGG-AGTCACTGGAGAAAGTAGTGCTGGAGATTTCCAAGAATGTGGTGCAT 1009
Query 1042 CATCGAT-GA-AGCAGCTTTCAAGG-GAGCCACAACCATGGT-GCCATCCAACAGCACAG 1097
|||| | || | ||||| || || ||| | | |||||||| || ||||||| | ||
Sbjct 1010 CATC-TTCGATA-CAGCTCTC-GGGCGAG-C-C-ACCATGGTATCC-TCCAACATCTCAA 1062
Query 1098 GACATTATTGCTTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAA 1157
|| | || ||| | ||||||| || ||| ||||||||||| |||||||| |||||||||
Sbjct 1063 GAAAATAATGCCTGCTCACATTCAGTAACCCGTAATAACGCAGTTATGCGATACAAGGAA 1122
Query 1158 AAGAAGAAGGCTCGCAAGTTTGACAAGCGAGTAAGGTATGTCT-CTAGGAAAGAAAGGGC 1216
||||||||||||||||||||||| ||| |||| ||||||| || || | |||| ||| ||
Sbjct 1123 AAGAAGAAGGCTCGCAAGTTTGATAAGAGAGTGAGGTATG-CTTCTCGCAAAGCAAGAGC 1181
Query 1217 TGATGTGAGACGGCGTGTGAAAGGACG-G-TTTGTCAA-GTCCGGTGAAGCTTATGATTA 1273
|||||||||||||||||| ||||| | | |||||||| | | |||||||||||||||||
Sbjct 1182 TGATGTGAGACGGCGTGT-AAAGGG-GAGATTTGTCAAAG-CTGGTGAAGCTTATGATTA 1238
Query 1274 CGACCCGATGAGCCCAACAAGAAGCTACTGAGGA 1307
|||||| | | |||||| |||||||| ||||||
Sbjct 1239 CGACCCCCTCACCCCAACCAGAAGCTATTGAGGA 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63915431110
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5