BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48250.1 Length=1704 Score E Sequences producing significant alignments: (Bits) Value Ahg949231 jgi|Araly1|949231|scaffold_801118.1 1759 0.0 Ahg357028 jgi|Araly1|357028|fgenesh1_pg.C_scaffold_8000815 905 0.0 Ahg478095 jgi|Araly1|478095|fgenesh2_kg.3__796__AT3G07650.3 350 3e-95 > Ahg949231 jgi|Araly1|949231|scaffold_801118.1 Length=1181 Score = 1759 bits (952), Expect = 0.0 Identities = 1100/1169 (94%), Gaps = 20/1169 (2%) Strand=Plus/Plus Query 176 TTGAAAGATGGGTTATATGTGTGATTTCTGTGGTGAACAAAGATCAATGGTGTATTGTCG 235 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 14 TTGAAAGATGGGTTATATGTGTGATTTCTGTGATGAACAAAGATCAATGGTGTATTGTCG 73 Query 236 ATCTGATGCAGCGTGTTTGTGTCTTTCGTGTGACCGTAATGTTCATTCTGCTAATGCTCT 295 |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||| | Sbjct 74 GGCTGATGCAGCATGTTTGTGTCTCTCGTGTGACCGTAGTGTTCATTCTGCTAATGCTTT 133 Query 296 ATCGAAACGTCATTCGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCTTCTGT 355 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 134 ATCGAAACGTCATTCGCGGACTTTGGTATGTGAGAGGTGTAATGCACAGCCAGCATCTGT 193 Query 356 CCGGTGTAGTGATGAGAGGGTTTCTCTATGTCAAAACTGTGATTGGTCAGGCCATGACGG 415 |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 194 TCGGTGTAGCGATGAGAGGGTTTCTCTATGTCAAAACTGTGATTGGTTAGGCCATGACGG 253 Query 416 CAAGAA-T-T-CTACTACTACTTCACATCATAAAAGGCAAACCATCAATTGTTATTCTGG 472 ||||| | | |||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 254 AAAGAATTCTACTACTACTACTTCACATCATAACAGGCAAACCATCAATTGTTATTCTGG 313 Query 473 TTGTCCCTCGAGTGCCGAATTATCCTCGATATGGTCTTTCTGTATGGATTTGAATATCTC 532 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 314 TTGTCCCTCGAGTGCCGAATTATCCTCGATATGGTCTTTCTTTATGGATTTGAATATCTC 373 Query 533 TTCTGCTGAAGAATCCGCTTGTGAGCAAGGAATGGGTTTGATGACTATAGATGAAGATGG 592 |||| ||| |||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 374 TTCTTCTGGAGAATCTGCTTGTGAGCAAGGAATGGGTTTGATGACTATAGATGAAGATGG 433 Query 593 CACAGGAGAAAAATCTGGTGTCCAAAAAATTAATGTAGAACAGCCTGAAACCAGTTCGGC 652 ||||||||||||| | ||||||| ||| |||||||||| ||||||||||||||||| || Sbjct 434 CACAGGAGAAAAACCAGGTGTCCCAAATGTTAATGTAGATCAGCCTGAAACCAGTTCAGC 493 Query 653 TGCACAAGGTATGGATCACTCTAGTGTTCCAGAAAATTCATCAATGGCTAAGGAGCTTGG 712 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 494 TGCACAAGGTATGGATCACTCTAGTGTTCCAGAAAATTCATCATTGGCTAAGGAGCTTGG 553 Query 713 AGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTGGCTCTTGA 772 |||||| ||||||||||| ||||||||||||||| ||||||||||||||||||||||||| Sbjct 554 AGTATGCGAGGATGACTTTAATGGAAATCTCATTACAGATGAAGTAGACTTGGCTCTTGA 613 Query 773 GAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTCGAGCACGG 832 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 614 GAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTCGAACACGG 673 Query 833 TGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCTCAA------------- 879 |||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 674 AGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCCTGAGGGCTCAAACAAAGGAAACGA 733 Query 880 --TGCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAAC 937 |||||||||| || ||| ||||||||||||||||||||||||||||||||||||||| Sbjct 734 AATGCAGCAGCCTGCCGTAAACAATAATGCATCTGCAGATTCGTTCATGACTTGTAGAAC 793 Query 938 CGAGCCAATAATTTGCTATTCATCAAAGCC-AGCACATTCGAATATCTCCTTCTCTGGCA 996 ||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||| Sbjct 794 GGAGCCAATAATTTGCTATTCATCAAAGCCTA-CTCATTCGAATATATCCTTCTCTGGCA 852 Query 997 TCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGATGAAGCAGC 1056 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 853 TCACGGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCATCATCGATGAAGCAGC 912 Query 1057 TTTCAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGCTTCCTCAC 1116 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 913 TTTTAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGCTTCCTCAC 972 Query 1117 ATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGCTCGCAAGT 1176 |||| ||||||||||| || ||||||||||| |||||||||||||||||||||||||||| Sbjct 973 ATGCCACAACACGTAACAATGCTGTTATGCGCTACAAGGAAAAGAAGAAGGCTCGCAAGT 1032 Query 1177 TTGACAAGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGA 1236 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 TTGACAAGCGAGTGAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACGGCGTGTGA 1092 Query 1237 AAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGATGAGCCCAACAAGAA 1296 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1093 AAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCAATGAGCCCAACAAGAA 1152 Query 1297 GCTACTGAGGATAAAACCTCAAAACAATG 1325 |||||||||||||| ||| |||||||||| Sbjct 1153 GCTACTGAGGATAAGACCCCAAAACAATG 1181 > Ahg357028 jgi|Araly1|357028|fgenesh1_pg.C_scaffold_8000815 Length=792 Score = 905 bits (490), Expect = 0.0 Identities = 577/616 (94%), Gaps = 17/616 (3%) Strand=Plus/Plus Query 705 GAGCTTGGAGTATGTGAGGATGACTTCAATGGAAATCTCATTTCAGATGAAGTAGACTTG 764 |||||||||||||| ||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 178 GAGCTTGGAGTATGCGAGGATGACTTTAATGGAAATCTCATTACAGATGAAGTAGACTTG 237 Query 765 GCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTC 824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 GCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAGATATCTCTTC 297 Query 825 GAGCACGGTGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCATGAGGGCT-------- 876 || ||||| |||||||||||||||||||||||||||||||||| |||||||| Sbjct 298 GAACACGGAGGAATTGGAAGTCTTTTCGAGAAAGATGAAGCTCCTGAGGGCTCAAACAAA 357 Query 877 -----C--AATGCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTCATGACT 929 | |||||||||||| || ||| ||||||||||||||||||||||||||||||| Sbjct 358 GGAAACGAAATGCAGCAGCCTGCCGTAAACAATAATGCATCTGCAGATTCGTTCATGACT 417 Query 930 TGTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCC-AGCACATTCGAATATCTCCTT 988 |||||||| ||||||||||||||||||||||||||||| | | ||||||||||| ||||| Sbjct 418 TGTAGAACGGAGCCAATAATTTGCTATTCATCAAAGCCTA-CTCATTCGAATATATCCTT 476 Query 989 CTCTGGCATCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGTCATCGAT 1048 |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 477 CTCTGGCATCACGGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCATCATCGAT 536 Query 1049 GAAGCAGCTTTCAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGC 1108 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 537 GAAGCAGCTTTTAAGGGAGCCACAACCATGGTGCCATCCAACAGCACAGGACATTATTGC 596 Query 1109 TTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAAAAGAAGAAGGC 1168 |||||||||||| ||||||||||| || ||||||||||| |||||||||||||||||||| Sbjct 597 TTCCTCACATGCCACAACACGTAACAATGCTGTTATGCGCTACAAGGAAAAGAAGAAGGC 656 Query 1169 TCGCAAGTTTGACAAGCGAGTAAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACG 1228 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 657 TCGCAAGTTTGACAAGCGAGTGAGGTATGTCTCTAGGAAAGAAAGGGCTGATGTGAGACG 716 Query 1229 GCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCGATGAGCCC 1288 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 717 GCGTGTGAAAGGACGGTTTGTCAAGTCCGGTGAAGCTTATGATTACGACCCAATGAGCCC 776 Query 1289 AACAAGAAGCTACTGA 1304 |||||||||||||||| Sbjct 777 AACAAGAAGCTACTGA 792 > Ahg478095 jgi|Araly1|478095|fgenesh2_kg.3__796__AT3G07650.3 Length=1703 Score = 350 bits (189), Expect = 3e-95 Identities = 495/634 (78%), Gaps = 56/634 (9%) Strand=Plus/Plus Query 699 GCTAAGGA-GCTTGGAGTATGTGAGGATGACTTCAATGGAAATC-TCATTTCAGATGAAG 756 |||||||| | ||||||| ||||| ||||||||| | || || | | | | ||||||| Sbjct 670 GCTAAGGATG-TTGGAGTCTGTGAAGATGACTTCTACGGGAACCTTGGTAT-GGATGAAG 727 Query 757 TAGACTTGGCTCTTGAGAACTATGAAGAACTCTTTGGTTCAGCCTTCAACTCATCAAG-A 815 | ||| |||| ||||||||||||||||| ||||||||| | ||||| ||| | || | | Sbjct 728 TTGACATGGCACTTGAGAACTATGAAGAGCTCTTTGGTACCGCCTTTAACCCCTC-GGAA 786 Query 816 TATCTCTTCGAGCACGGTGGAATTGGA-AGTCTTTT-C-G-AG----AAAGATGAAGCT- 866 | || || | ||| ||||||| | || |||||||| | | || ||| | ||||| Sbjct 787 GAGCTATTTGGGCATGGTGGAA-TCGATAGTCTTTTCCAGAAGCACCAAACA-AAAGCTC 844 Query 867 CATGAGGG-CTCAA-T-GCAGCAGCCAGCATTAAGCAATAATGCATCTGCAGATTCGTTC 923 || ||||| || | | ||| ||||| | ||| | | | | ||||||||| Sbjct 845 CA-GAGGGAGGGAATTCGGTGCATCCAGC--T-GGCAGT-A---A--T---GATTCGTTC 891 Query 924 ATGACTT-GTAGAACCGAGCCAATAATTTGCTATTCATCAAAGCCAGCACATTCGAATAT 982 |||| || | | ||| ||||||||||||||||| |||| ||||||||||||||||| || Sbjct 892 ATGAGTTCG-AAAACTGAGCCAATAATTTGCTACACATCGAAGCCAGCACATTCGAACAT 950 Query 983 CTCCTTCTCTGGCA-TCACTGGAGAAAGTAATGCTGGAGATTTCCAAGATTGTGGGGCGT 1041 || |||||||| | ||||||||||||||| |||||||||||||||||| ||||| || | Sbjct 951 ATCGTTCTCTGG-AGTCACTGGAGAAAGTAGTGCTGGAGATTTCCAAGAATGTGGTGCAT 1009 Query 1042 CATCGAT-GA-AGCAGCTTTCAAGG-GAGCCACAACCATGGT-GCCATCCAACAGCACAG 1097 |||| | || | ||||| || || ||| | | |||||||| || ||||||| | || Sbjct 1010 CATC-TTCGATA-CAGCTCTC-GGGCGAG-C-C-ACCATGGTATCC-TCCAACATCTCAA 1062 Query 1098 GACATTATTGCTTCCTCACATGCAACAACACGTAATAACGCTGTTATGCGTTACAAGGAA 1157 || | || ||| | ||||||| || ||| ||||||||||| |||||||| ||||||||| Sbjct 1063 GAAAATAATGCCTGCTCACATTCAGTAACCCGTAATAACGCAGTTATGCGATACAAGGAA 1122 Query 1158 AAGAAGAAGGCTCGCAAGTTTGACAAGCGAGTAAGGTATGTCT-CTAGGAAAGAAAGGGC 1216 ||||||||||||||||||||||| ||| |||| ||||||| || || | |||| ||| || Sbjct 1123 AAGAAGAAGGCTCGCAAGTTTGATAAGAGAGTGAGGTATG-CTTCTCGCAAAGCAAGAGC 1181 Query 1217 TGATGTGAGACGGCGTGTGAAAGGACG-G-TTTGTCAA-GTCCGGTGAAGCTTATGATTA 1273 |||||||||||||||||| ||||| | | |||||||| | | ||||||||||||||||| Sbjct 1182 TGATGTGAGACGGCGTGT-AAAGGG-GAGATTTGTCAAAG-CTGGTGAAGCTTATGATTA 1238 Query 1274 CGACCCGATGAGCCCAACAAGAAGCTACTGAGGA 1307 |||||| | | |||||| |||||||| |||||| Sbjct 1239 CGACCCCCTCACCCCAACCAGAAGCTATTGAGGA 1272 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63915431110 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5