BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48270.1
Length=1436
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949233 jgi|Araly1|949233|scaffold_801120.1 1589 0.0
> Ahg949233 jgi|Araly1|949233|scaffold_801120.1
Length=1010
Score = 1589 bits (860), Expect = 0.0
Identities = 961/1011 (95%), Gaps = 2/1011 (0%)
Strand=Plus/Plus
Query 126 CATTGAGGTTTGTAATAAAGATGTTGTCATTTCGAATGCCGTCTATCGGAAGCCAACCTA 185
||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 1 CATTGAGGTTTGTAATAAAGATGTTATCATTTCGAATCCCGTCTATCGGAGGCCAACCTA 60
Query 186 CGGCATTTGCTGCAAAAATAACGGACAATCCAAAGACCGTGGCACAACTCAAGTCGGCTG 245
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 CGGCATTTGCTGCAAAAATAACAGACAATCCAAAGACCGTGGCACAACTCAAGTCGGCTG 120
Query 246 CATCGCCTTCACCTCATAGTACCGTGACGTGCGGTTACCAAGCTCATGTGGCAGGGTTCT 305
|| | |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 121 CAACACCTTCACCTCATAGTACCGTCACGTGCGGTTACCAAGCTCATGTGGCAGGCTTCT 180
Query 306 TTCGAAACGTCACCGTTTTATGGTCCAAGAATCTCATGAATCATTCCCTCACCGTAATGG 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTCGAAACGTCACCGTTTTATGGTCCAAGAATCTCATGAATCATTCCCTCACCGTAATGG 240
Query 366 TGTCGAGTTTAGACAATGACATGAATTATTGTTGTAAGATTGATCTCGTGAAGCCATGGC 425
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCTCGAGTTTAGACAATGACATGAATTATTGTTGTAAGATTGATCTCGTGAAGCCATGGC 300
Query 426 AGTTTTGGAGCAAAAGAGGGTC-AAAGTCATTCGACGTAGAGGGAAACTTTGTGGAGGTC 484
||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||
Sbjct 301 AGTTTTGGAGCAAAAGAGGCTCAAAAG-CATTCGACGTAGAGGGAAACTTTGTGGAGGTC 359
Query 485 TTTTGGGATCTTCGATCAGCAAAATTGGCTGGAAACGGTAGCCCCGAACCCGTGTCAGAC 544
||||||||||||||||| ||||||||||||||||||||||| || |||||||||||||||
Sbjct 360 TTTTGGGATCTTCGATCGGCAAAATTGGCTGGAAACGGTAGTCCGGAACCCGTGTCAGAC 419
Query 545 TATTACGTGGCAGTAGTTTCTGATGAAGAGGTTGTTTTATTGTTGGGAGATTTAAAGCAA 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TATTACGTGGCAGTAGTTTCTGATGAAGAGGTTGTTTTATTGTTGGGAGATTTAAAGCAA 479
Query 605 AAGGCTTATAAGCGGACCAAGTCAAGACCGGCATTGGTGGAAGGGTTCATATACTTTAAA 664
|||||||| ||| |||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 480 AAGGCTTACAAGAGGACGAAGTCAAGACCGGCATTGGTGGAAGGGTTCATATATTTTAAG 539
Query 665 AAAGAAAGCATATTTGGGAAGAAAACGTTTTCGACTCGGGCAAGGTTTGACGAACAAAGA 724
||||||||||| |||||||||||||||||||| |||||||| || ||||| || |||| |
Sbjct 540 AAAGAAAGCATTTTTGGGAAGAAAACGTTTTCTACTCGGGCGAGATTTGATGAGCAAAAA 599
Query 725 AAGGAACATGAAGTGGTGGTGGAGAGCTCTAATGGAGCAGCGGAGCCAGAGATGTGGATA 784
|| |||||||||||||||||||| ||||| |||||||| ||||| || ||||||||||||
Sbjct 600 AAAGAACATGAAGTGGTGGTGGAAAGCTCCAATGGAGCGGCGGATCCCGAGATGTGGATA 659
Query 785 AGCGTTGATGGGATCGTGGTTGTGAACGTGAAGAATCTACAATGGAAATTTAGGGGAAAC 844
||||| || |||||||| || ||| ||||||||||||||||||||||||||||||| ||
Sbjct 660 AGCGTGGACGGGATCGTTGTCGTGCACGTGAAGAATCTACAATGGAAATTTAGGGGTAAT 719
Query 845 CAAATGGTGATGGTGGATAGAACACCGGTAATGGTCTACTATGATGTTCATGATTGGTTG 904
||||||||| ||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 720 CAAATGGTGTTGGTGGATAGAACGCCGGTAATGGTCTACTACGATGTTCATGATTGGTTG 779
Query 905 TTTGCAAGTTCGGAGACTGCAGCGAGTTCAGGGTTGTTTTTGTTTAAGCCTGTTCCGGTT 964
||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 780 TTTGCAAGTTCAGAGACTGCGGCGACTTCAGGGTTGTTTTTGTTTAAGCCTGTTCCGGTT 839
Query 965 GGAGCGATGGTAGATGAGAGCTTTAGCGATGCGGAGGAAGGAGATAGCGGAGGAGGGAGT 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 GGAGCGATGGTAGATGAGAGCTTTAGCGATGCGGAGGAAGGAGATAGCGGAGGAGGGAGT 899
Query 1025 AGTCCTTTGAGTCGTTATAATTCAGCATCAAGTGGTTTTGGACCATTGCATGACTTTTGT 1084
|||||||| |||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 900 AGTCCTTTAAGTCGTTATAATTCAGCATCAAGTGGTTATGGACCGTTGCATGACTTTTGT 959
Query 1085 TTGTTTCTTTATGCTTGGAAACTTGAATGAAGACTATTAATATCATAGTGT 1135
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 960 TTGTTTCTTTATGCTTGGAAACTTGAATGAAGAATATTAATATCATAGTGT 1010
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53707245450
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5