BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48290.1
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494881 jgi|Araly1|494881|fgenesh2_kg.8__697__AT5G48290.1 660 0.0
> Ahg494881 jgi|Araly1|494881|fgenesh2_kg.8__697__AT5G48290.1
Length=661
Score = 660 bits (357), Expect = 0.0
Identities = 444/485 (92%), Gaps = 9/485 (2%)
Strand=Plus/Plus
Query 14 AGAAATCTAAGCCAAAACATTCAAAGCGATTTCTCAAGCAAAACTAGAAGATGAAGCAAA 73
|||| |||||||||||||||||||||||||| |||||||||||| ||| |||| ||||||
Sbjct 2 AGAAGTCTAAGCCAAAACATTCAAAGCGATTGCTCAAGCAAAACAAGATGATGCAGCAAA 61
Query 74 AGATCTTGATAAGAGTGACTATGACCGATGACAAAACCCGAGCAAAAGCAATGACAAAAG 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 62 AGATCTTGATAAGAGTGACTATGACCGATGACAAAACCCGAGCAAAAGCAATGACAAAAG 121
Query 134 CAGTTCAGTTTAAAGGCGTGTCAGCCGTGGAAATAAAAGGCGATCACAGGAACCAGATAG 193
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 122 CAGTTCAGTTTAAAGGCGTGTCAGCCGTGGAAATAAAAGGCGATCATAGGAACCAGATAG 181
Query 194 AGGTAACCGGCGTTGAAGTTGATATGATCCCTCTTATCCAAATACTCAGAAAGAAGGTAG 253
|||| ||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 182 AGGTTACCGGTGTTGAAGTTGATATGATCCCTCTCATCCAAAAACTCAGAAAGAAGGTAG 241
Query 254 CGTTCGCAGAGCTTGTGAGCGTGACCAAAGTTGAACCACCAAAGAAAGAAGACGAGAAGA 313
| || ||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 242 CATTTGCAGAGCTTGTAAGCGTGACCAAAGTCGAACCTCCAAAGAAAGAAGACGAGAAGA 301
Query 314 AAGGAGGGGACGGAAAGGGTGCAGAGGGAAAAGGCGGTGACCAAAAAGGTGGCGATAAGA 373
| |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 302 AGGGAGGGGACGGAAAAGGTGCAGGGGGAAAAGGTGGTGACCAAAAAGGTGGCGATAAGA 361
Query 374 AAGGGCCAGATGACAAGGAACCTCCGGAGCCAAAACCTGTGCCGTGTTATCCATGGCCTC 433
|||||||||| || ||| ||||||||||||||||||| ||||| | | ||| | || |
Sbjct 362 AAGGGCCAGAAGATAAGAAACCTCCGGAGCCAAAACCGGTGCC-T-TCCTCCTTT-CC-C 417
Query 434 TGCAGGGATACGGTGTACCTTCCTCCTTTCCTCATCAAGGATACGGTGTGCCTTCCACCT 493
|||||||||||||| |||| ||||||||| | || ||| |||||||||||||| |||
Sbjct 418 --CAGGGATACGGTGTGCCTTTCTCCTTTCC-C--CAGGGAGACGGTGTGCCTTCCGCCT 472
Query 494 TTCCC 498
|||||
Sbjct 473 TTCCC 477
Score = 257 bits (139), Expect = 7e-68
Identities = 174/190 (92%), Gaps = 5/190 (3%)
Strand=Plus/Plus
Query 451 CCTTCCTCCTTTCCTCATCAAGGATACGGTGTGCCTTCCACCTTTCCCCAGGGAGACGGT 510
|||||||||||||| | || |||||||||||||||| | ||||||||||||||||||||
Sbjct 403 CCTTCCTCCTTTCC-C--CAGGGATACGGTGTGCCTTTCTCCTTTCCCCAGGGAGACGGT 459
Query 511 GTACCTTCCTCGTTTCCATACCCGTGCCATCCGGCACATCCCTACAATGATATAGGGGAA 570
|| |||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 460 GTGCCTTCCGCCTTTCCCTACCCGTGCCATCCGGCACATCCCTACAATGATATAGGGGAA 519
Query 571 CCCGTTTACAATCACGAACCCAATTGCAAAATCATGTGAAATGAG-TTTTACAGAGGAAG 629
|||||||| ||||| ||||||||||||| |||||||||||| || ||||||||||||||
Sbjct 520 CCCGTTTATAATCATGAACCCAATTGCACAATCATGTGAAAC-AGGTTTTACAGAGGAAG 578
Query 630 ATTGATAGAG 639
||||||||||
Sbjct 579 ATTGATAGAG 588
Score = 71.3 bits (38), Expect = 1e-11
Identities = 68/81 (84%), Gaps = 8/81 (10%)
Strand=Plus/Plus
Query 670 TTGTAAAGAACTAAAGAAGCACTATGTTTACTATTTAGTCATATGAATAAAGCTCTGAGG 729
|||||||||||||||||| || | ||||||||| || | | | | | ||||||||||
Sbjct 589 TTGTAAAGAACTAAAGAATCAATGTGTTTACTA--TA-T--T-T-AGT-CAGCTCTGAGG 640
Query 730 CCACCAAATCAATTTACTGCT 750
|||||||||||||||||||||
Sbjct 641 CCACCAAATCAATTTACTGCT 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27639114825
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5