BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48300.1
Length=1896
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494882 jgi|Araly1|494882|fgenesh2_kg.8__698__AT5G48300.1 2512 0.0
> Ahg494882 jgi|Araly1|494882|fgenesh2_kg.8__698__AT5G48300.1
Length=1787
Score = 2512 bits (1360), Expect = 0.0
Identities = 1661/1800 (92%), Gaps = 46/1800 (3%)
Strand=Plus/Plus
Query 1 TTTTTCGCTTTTCCACAATCACAAGACAACCACAAAACTCTCACTCCAAA-ACTCTCAAT 59
|||||| |||| |||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1 TTTTTCACTTTCCCACAATCACAAGACAACAACAAAACTCTCACTCCAAATTCTCTCAAT 60
Query 60 TT-TGCC--T--TCCTTTGA---T--CG--A---A-T-ACTACAATGGCGTCTGTATCTG 102
|| | || | |||||||| | || | | | || |||||||||||| | |||
Sbjct 61 TTCT-CCTTTGATCCTTTGATCGTAGCGAAATTGATTCACAACAATGGCGTCTATGGCTG 119
Query 103 CAATTGGAGTTCTCAAGGTACCTCCTGCTTCGACTTCCAATTCCACCGGAAAAGCCACGG 162
| |||||| |||| ||||||||||||||||||| || | |||||||||| ||||||||||
Sbjct 120 CGATTGGATTTCTAAAGGTACCTCCTGCTTCGAGTTTCGATTCCACCGGCAAAGCCACGG 179
Query 163 AGGCGGTTCCCACGAGGACTCTTTCTTTCTCCTCCTCTGTTACTTCATCCGACGACAAG- 221
||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |||
Sbjct 180 AGGTTGTTCCGACGAGAACTCTTTCTTTCTCCTCCTCTGTAACTTCATCCGACGAGAAGA 239
Query 222 A--TTTCACTCAAATCCACCGTCTCCCGTC-TTTGTAAATCTGTTGTTCGCAG--GA-AT 275
| ||||||||||||||||||||||||||| | | |||||||||||||||| | || ||
Sbjct 240 AGGTTTCACTCAAATCCACCGTCTCCCGTCGTCT-TAAATCTGTTGTTCGCGGCCGAGAT 298
Query 276 CCGATCATCGTCTCTCCCAAAGCCGTCTCAGATTCTCAAAACTCTCAAACTTGTCTCGAT 335
|| ||||||||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 299 ---ATGATCGTCTCTCCTAAAGCCGTCTCCGATTCTCAAAACTCACAAACTTGTCTCGAT 355
Query 336 CCTGATGCTAGCAGCAGTGTTTTGGGGATAATCTTAGGAGGTGGAGCTGGAACTCGTCTT 395
|||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 356 CCTGATGCGAGCAGTAGTGTGTTGGGGATAATCTTAGGAGGTGGAGCTGGAACTCGTCTT 415
Query 396 TATCCACTTACGAAGAAGAGAGCGAAACCAGCTGTGCCTCTTGGTGCTAACTATAGGCTT 455
||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 416 TATCCTCTTACGAAGAAGAGAGCGAAACCAGCTGTTCCTCTTGGTGCTAACTATAGGCTC 475
Query 456 ATTGATATTCCTGTGAGCAACTGTTTGAATAGCAACATATCCAAGATCTATGTTCTTACT 515
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 476 ATTGATATTCCTGTGAGCAACTGTTTGAATAGCAACATATCCAAAATCTATGTTCTTACT 535
Query 516 CAGTTCAATTCCGCGTCTTTGAATCGTCATCTTTCACGAGCTTATGCTAGTAACATGGGA 575
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 536 CAGTTCAATTCCGCGTCTCTGAATCGTCATCTTTCACGAGCTTATGCGAGTAACATGGGA 595
Query 576 GGTTATAAGAATGAAGGATTCGTTGAAGTTCTCGCTGCTCAACAGAGTCCTGAAAACCCC 635
||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| |||
Sbjct 596 GGTTATAAGAATGAAGGTTTTGTTGAAGTTCTTGCTGCTCAACAAAGTCCTGAAAATCCC 655
Query 636 AACTGGTTCCAGGGGACAGCTGATGCCGTCAGGCAATACTTGTGGTTGTTCGAGGAGCAT 695
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 656 AACTGGTTCCAGGGGACAGCTGATGCGGTGAGGCAATACTTGTGGTTGTTCGAGGAGCAT 715
Query 696 AATGTCTTGGAGTATCTCATTCTTGCTGGGGATCATTTGTATAGAATGGACTATGAGAAG 755
||||| ||||||||||| ||||| |||||||||||||||||||||||||| || ||||||
Sbjct 716 AATGTTTTGGAGTATCTGATTCTCGCTGGGGATCATTTGTATAGAATGGATTACGAGAAG 775
Query 756 TTTATTCAAGCACATAGGGAGACTGATGCTGATATCACAGTAGCTGCATTACCAATGGAC 815
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 776 TTTATTCAAGCACATAGAGAGACTGATGCTGATATCACAGTAGCTGCATTACCAATGGAT 835
Query 816 GAGCAACGAGCCACTGCTTTTGGGCTGATGAAGATTGATGAGGAAGGACGTATTA-TTGA 874
||||||||||||||||||||||||||||||||||| ||||| |||||||||| || ||||
Sbjct 836 GAGCAACGAGCCACTGCTTTTGGGCTGATGAAGATCGATGAAGAAGGACGTA-TAGTTGA 894
Query 875 ATTTGCTGAAAAACCAAAAGGGGAGCACCTAAAGGCCATGAAGGTTGACACAACAATTCT 934
|||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||||||
Sbjct 895 ATTTGCCGAAAAACCAAAGGGGGAGCACTTAAAGGCCATGAAGGTTGACACAACAATTCT 954
Query 935 AGGTCTTGATGATCAGAGAGCCAAGGAGATGCCTT-TCATTGCTAGTATGGGTATTTATG 993
|||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 955 TGGTCTTGATGATAAGAGAGCCAAGGAGATGCCTTAT-ATTGCTAGTATGGGTATTTATG 1013
Query 994 TTGTAAGCAGAGATGTAATGCTAGACTTACTACGGAATC-AGTTTCCTGGAGCTAATGAC 1052
||||||||||||||||||||||||| ||||||||| | | | ||||||||||||||||||
Sbjct 1014 TTGTAAGCAGAGATGTAATGCTAGAATTACTACGGGA-CAAATTTCCTGGAGCTAATGAC 1072
Query 1053 TTTGGAAGTGAAGTCATTCCCGGTGCCACTTCCCTTGGACTGAGGGTGCAAGCTTACCTA 1112
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1073 TTTGGAAGCGAAGTCATTCCCGGTGCCACTTCCCTTGGACTGAGGGTGCAAACTTACCTA 1132
Query 1113 TATGATGGTTACTGGGAAGACATTGGTACTATAGAGGCATTT-TATAACGCTAATCTTGG 1171
|||||||| ||||||||||||||||||||||||||||| ||| ||||| || ||||||||
Sbjct 1133 TATGATGGCTACTGGGAAGACATTGGTACTATAGAGGC-TTTCTATAATGCAAATCTTGG 1191
Query 1172 AATCACCAAGAAACCAGTTCCTGATTTTAGTTTCTATGACCGTTCTGCTCCGATCTACAC 1231
||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct 1192 AATCACCAAGAAACCAGTTCCTGATTTTAGTTTCTATGATCGTTCCGCTCCTATCTACAC 1251
Query 1232 ACAGCCGCGTTATTTACCACCGTCTAAGATGCTTGATGCTGATGTTACTGACAGTGTCAT 1291
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1252 ACAGCCACGTTATTTACCACCGTCTAAGATGCTTGATGCTGATGTCACGGACAGTGTCAT 1311
Query 1292 CGGAGAGGGCTGTGTTATCAAGAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTC 1351
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 CGGAGAGGGATGTGTTATCAAGAACTGCAAAATTCATCACTCTGTGGTTGGACTCCGTTC 1371
Query 1352 CTGCATATCAGAAGGTGCTATTATTGAAGATTCGTTATTAATGGGAGCTGATTATTACGA 1411
|||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||
Sbjct 1372 CTGCATATCAGAAGGTGCTATTATTGAAGATTCGCTATTAATGGGCGCTGACTATTACGA 1431
Query 1412 GACTGCTACGGAAAAGAGCCTCTTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAA 1471
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1432 GACTGCTTCGGAAAAGAGCCTCCTAAGCGCGAAAGGAAGTGTACCCATAGGTATTGGGAA 1491
Query 1472 AAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCACGTATCGGTGACAATGTCAA 1531
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1492 AAACTCGCACATCAAAAGGGCCATCATCGACAAAAACGCACGTATTGGTGACAATGTCAA 1551
Query 1532 GATCATAAACAGCGACAACGTGCAAGAGGCAGCGAGAGAGACTGATGGATATTTCATAAA 1591
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1552 GATCATAAACAGTGACAATGTGCAAGAGGCAGCGAGAGAGACTGATGGATATTTCATAAA 1611
Query 1592 GAGCGGAATTGTAACGGTTATCAAAGACGCCTTAATCCCAACCGGCACTGTCATCTGAAG 1651
||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 1612 GAGCGGAATTGTAACCGTTATCAAAGACGCCTTAATCCCAACCGGCACTCTCATCTAAAC 1671
Query 1652 TACACA--TAATGCTCCTTTGTTTATTTCTTCAT-CTTTCTAATGCCCTATCAATAAG-T 1707
|||||| ||||||| || ||||||||||| | | ||| ||||| ||||||||||||| |
Sbjct 1672 TACACAAGTAATGCTACTCTGTTTATTTCT-CTTTCTTCCTAATTCCCTATCAATAAGCT 1730
Query 1708 TTTCTTTATGGCTTTTTAAGCCCCAATAAATCTACTACTAGTTGTAATGCTGCTTACGAA 1767
||| |||||||||||| | |||||||||||||||||||| |||||| || |||||| |||
Sbjct 1731 TTT-TTTATGGCTTTT-ATGCCCCAATAAATCTACTACTGGTTGTATTGTTGCTTA-GAA 1787
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71228758150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5