BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48330.1
Length=1533
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494884 jgi|Araly1|494884|fgenesh2_kg.8__700__AT5G48330.1 2237 0.0
> Ahg494884 jgi|Araly1|494884|fgenesh2_kg.8__700__AT5G48330.1
Length=1528
Score = 2237 bits (1211), Expect = 0.0
Identities = 1428/1533 (93%), Gaps = 14/1533 (1%)
Strand=Plus/Plus
Query 3 TCAAGATGCCGGAATCATTTACACAATGAAAACTTTTCTTTCTCCGGCGATATGCTTCGA 62
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 TCAAGATGCCGGAATCACTTACATAATGAAAACTTTTCTTTCTCCGGCGATATGCTTCGA 60
Query 63 TCATGGTCGATCGCGAAACTACAAATCAGTAAAGTTTATTCATCCGATTCTCGCTTTTGC 122
| ||||||||| |||||| |||| |||| || |||| | | ||||| || | ||| |||
Sbjct 61 TTATGGTCGATAGCGAAAGTACAGGTCAGGAATGTTTCTACCTCCGAATCCCTCTTCTGC 120
Query 123 ACACACGTTCTCTTCAATGGAGTTGTCAGACGACAATTCACGAGCACTAGCGGCGAAAGA 182
| ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 121 AGACACGTTCTTTTCAATGGATTTGTCAGACGACAATTCACGAGCACTAGGGGCGAAAGA 180
Query 183 AGAACAGTGATGAGCTTCGGTGACGGAAACCTTGGCGCTCTTGGTCTTTCATCATCGTCG 242
|||||||||||||||||||||||||||| || ||| ||||||||||| ||||||||||||
Sbjct 181 AGAACAGTGATGAGCTTCGGTGACGGAAGCCATGGAGCTCTTGGTCTCTCATCATCGTCG 240
Query 243 ATTCCAGGCATGGGAATGGACGCTTACGAACCCACCGTAGTTTCTAATTTGCCTTCCGAT 302
|||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||||
Sbjct 241 ATTCCAGGCATGGGAATGGATGCTTACGAACCTACCGTTGTTTCTAATTTGCCTTCCGAT 300
Query 303 ATCTCTTCCATATCCGCCGGACATTACCATTCTCTTGCCGTTACATCTAGCGGTGAGATT 362
||||||| ||||||||||||||| || ||||||||||||||||||| | |||||||||||
Sbjct 301 ATCTCTTTCATATCCGCCGGACACTATCATTCTCTTGCCGTTACATTTGGCGGTGAGATT 360
Query 363 TGGGCTTGGGGTCGCAACGACGAAGGCCAGCTCGGTCGAATC-GTAATTGATTCTAGTAG 421
|||||||||||||||||| | ||||||||||||||||||||| | |||||||| ||||
Sbjct 361 TGGGCTTGGGGTCGCAACAATGAAGGCCAGCTCGGTCGAATCACT-GTTGATTCTGGTAG 419
Query 422 AGATTCAAGGAGTGAACCTAAGAGAGTGGAAGGTCTAGAGAATGTGAATGTCCAGGCAGC 481
|||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||| ||
Sbjct 420 AGATTCAAGGAGTGAACCGAAGAGAGTGGAAGGTCTAGATAATGTGAATGTCCGGGCTGC 479
Query 482 GTTTGCGTCTGGAGTTGTTTCAGCTGCTATTGGAGATGATGGCTCTTTGTGGGTTTGGGG 541
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 GTTTGCGTCTGGAGTTGTTTCAGCGGCTATTGGAGATGATGGCTCTTTGTGGGTTTGGGG 539
Query 542 AAGATCTAAAAGAGGACAGCTTGGTCTTGGAAATGGTATCATTGAAGCTCGAGTTCCTTC 601
||||||||||||||| |||||||| |||||||| |||||||| |||||||||||||||||
Sbjct 540 AAGATCTAAAAGAGGGCAGCTTGGGCTTGGAAAAGGTATCATAGAAGCTCGAGTTCCTTC 599
Query 602 GAGAGTTGAAAATTTAGCTGCAGAGCACGTTGTTAAGGTATCATTAGGTTGGGGGCACGC 661
||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 600 GAGAGTTGAAACTTTAGCTGCAGAGCACGTCGTGAAGGTATCATTAGGTTGGGGGCACGC 659
Query 662 ACTTGCGCTTACTGTGGATGGTAAAGTTTTTGGATGGGGTTATGTAGCTGATGGAAGAGT 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACTTGCGCTTACTGTGGATGGTAAAGTTTTTGGATGGGGTTATGTAGCTGATGGAAGAGT 719
Query 722 AGGCAATGTTGGACTTCCACTTGAAGCATCTCTGCTAGAT-TCAATTACAGATGGGTCGA 780
|||||||||||||||||||||||||||||||||| ||||| | |||||||||||||||||
Sbjct 720 AGGCAATGTTGGACTTCCACTTGAAGCATCTCTGTTAGATAT-AATTACAGATGGGTCGA 778
Query 781 TGAAAGGTCACCATGCTGCTGGTGATTTGAATCTTGAGGCAGCTGAAAAGAAGGTTGTGG 840
|||||| ||| || ||||| || ||||||||||||| ||||| ||||||||||||||||
Sbjct 779 TGAAAGATCAACACGCTGC-GG--ATTTGAATCTTGAAGCAGCGGAAAAGAAGGTTGTGG 835
Query 841 AAGCAATGAGTAAAGAGAACGATATGCCAATTGCTTGGGAACCTTGTCTGGTGGAAGAAA 900
|||||||||| || |||||||| |||||||| || ||||||||| |||||||||||||||
Sbjct 836 AAGCAATGAGCAAGGAGAACGACATGCCAATAGCGTGGGAACCTCGTCTGGTGGAAGAAA 895
Query 901 CGTGTAACGAGAAGGTAGCAGATATTGCGTGCGGTTCCGATCACTCCTTGATCCTTTGTC 960
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 CACGTAACGTGAAGGTAGCAGATATTGCGTGCGGTTCCGATCACTCCTTGATCCTTTGTC 955
Query 961 ATGATGGCACACTTTTGAGCGCTGGGAGCAACATCTATGGTCAGTTGGGTCGGTCTAAAC 1020
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 956 ATGATGGCACACTTTTGAGCTCTGGGAGCAACATCTATGGTCAGTTGGGTCGGTCTAAAC 1015
Query 1021 AAGATCTAGGAATGAAACCTGTTGATATAACTGAATCTCCGATCTCTATAGCAGCTGGTC 1080
|||| || ||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||
Sbjct 1016 AAGACCTCGGAATGACACCTGTTGACATAACTGAATCCCCGATCTCTATTGCAGCTGGTC 1075
Query 1081 TTGGTCATTCACTAGCTATCTGCAACAGGGGTGAAAGAAATATTCTCTCATGGGGTTGGA 1140
|||||||||||||||||||||||||||| | ||||||||| |||||||||||||||||||
Sbjct 1076 TTGGTCATTCACTAGCTATCTGCAACAGAGATGAAAGAAAGATTCTCTCATGGGGTTGGA 1135
Query 1141 ACCGAAGCCGGCAGCTTGGTAGGGGAAAACCGGAAAACCTGCCAAGAGAAGTAGAAGGTT 1200
|||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1136 ACCGTAGCCGGCAGCTTGGTAGGGGAAAACCGGAACACCTGCCAAGAGAAGTAGAAGGTT 1195
Query 1201 TCGATGGGGAAAGTCCAGCTTCAGTATCAGCAGGGCGTGTGCATTCCTTGTGTGTAACAG 1260
| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1196 TTGATGGGGAAAATCCAGCTTCAGTATCAGCAGGACGTGTGCATTCCTTGTGTGTAACAG 1255
Query 1261 AGAAAGGAGAAGCTTGGGTTTGGGGTTGTGGGAAGAATGGTAGGCTCGGTTTAGGAAGCT 1320
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1256 AGAAAGGAGAAGCTTGGGTTTGGGGTTGTGGGAAGAATGGTAGGCTTGGTTTAGGAAGCT 1315
Query 1321 CGAGCGATGAGCCTGAACCGATGTTGTTAGAGGATGTAGAGGGTTGTGTTCTTCAAGCAG 1380
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||
Sbjct 1316 CGAGCGATGAGCCTGAACCAATGTTGTTAGAGGACATAGAGGGTTGTGTTCTTCAAACAG 1375
Query 1381 TCGCTGGCTTTGATCACAGCCTGATCTTAGTGGCTGAATAGCCCCACCCAAT-A--T--C 1435
|||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
Sbjct 1376 TCGCTGGCTTTGATCACAGCCTGATCTTAGTGGCTGAATAGCCCCACCAAATCAAATGTC 1435
Query 1436 TAGTAAACATTGATCTTGAA-AATTTATTTCATGTATTTACGTGCGATCAGTTGCTTTTT 1494
||| |||||||||||||||| |||| || |||||||| ||||||||||||||||||||||
Sbjct 1436 TAGGAAACATTGATCTTGAATAATT-ATATCATGTATCTACGTGCGATCAGTTGCTTTTT 1494
Query 1495 AAGTGAACTGGTGAAATAAAATTAGAAAGATCA 1527
||||| |||||||||||||||||||||||||
Sbjct 1495 GGGTGAATTGGTGAAATAAAATTAGAAAGATCA 1527
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57401999215
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5