BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48335.1

Length=675
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331241 jgi|Araly1|331241|fgenesh1_pm.C_scaffold_8000584           551    3e-156


> Ahg331241 jgi|Araly1|331241|fgenesh1_pm.C_scaffold_8000584
Length=345

 Score =  551 bits (298),  Expect = 3e-156
 Identities = 330/345 (96%), Gaps = 4/345 (1%)
 Strand=Plus/Plus

Query  91   ATGCAGAACCCGAACTCATCATCTTC-ACTGGTGGATTCAACCTCCGCCCCTAAACGATA  149
            ||||||||||| |||||||||||||| | ||||||||||||||||||| |||||||||||
Sbjct  1    ATGCAGAACCCAAACTCATCATCTTCTA-TGGTGGATTCAACCTCCGCACCTAAACGATA  59

Query  150  CACTCCACCTAACCAAAGGAACCGTTCCTCGAACCGGAGGAGATCAAGAGGAAGCTTCCA  209
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  60   CACTCCACCTAACCAAAGGAACCGTTCTTCGAACCGGAGGAGATCAAGAGGAAGCTTCCA  119

Query  210  TAGTAATGAGGGAGAGAGCAGTCAGTCTGTTGCTGTTGGTTTCCAGAGGGAAAACTCTTC  269
            |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  120  TAGTAATGAGGGCGAGAGCAGTCAGCCTGTTGCTGTTGGTTTCCAGAGGGAAAACTCTTC  179

Query  270  TCCAAAGATTATATCAGTAGAGGGTTGCTCTAGGAGTGAAGCTTTTCAGCTTCTCAGTGA  329
            |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  TCCAAAGATTATATCTCTAGAGGGTTGCTCTAGGAGTGAAGCTTTTCAGCTTCTCAGTGA  239

Query  330  TCGTTGGACAGCTGCAATGCATCTATACAATGACCC-TAGTGTTGATTTGTCTGAAAGAC  388
            ||||||| |||||||||||||||||||||||||||| |  | ||||||||||||||||||
Sbjct  240  TCGTTGGGCAGCTGCAATGCATCTATACAATGACCCATC-TATTGATTTGTCTGAAAGAC  298

Query  389  CGATGATGTACTATGGTGGGGATGTGTGGGGTAAACTGCCTCACT  433
            |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  299  CGATGATGTATTATGGTGGGGATGTGTGGGGTAAACTGCCTCACT  343



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24779896050


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5