BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48340.1
Length=2156
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916323 jgi|Araly1|916323|Al_scaffold_0008_1074 2218 0.0
> Ahg916323 jgi|Araly1|916323|Al_scaffold_0008_1074
Length=1548
Score = 2218 bits (1201), Expect = 0.0
Identities = 1440/1553 (93%), Gaps = 25/1553 (2%)
Strand=Plus/Plus
Query 214 ATGGTGAATTTGTTCTTATCTGAACCAAAGTGGAACGATGATGCCCAGAAAAGTAG---T 270
||||||||| ||||||| |||||||||||| ||||||||| |||| | || |||||
Sbjct 1 ATGGTGAATCTGTTCTTGTCTGAACCAAAGAGGAACGATGTTGCCTACAACAGTAGCAAC 60
Query 271 AACATCAATGTTATTTTGCCTCTGTTAAACAAATTAGGCTCTCAAATTCAATCATTGGTG 330
||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 61 AACATCAATGTGATTTTGCCTCTGTTGAACAAATTAGGCTCTCAAATTCAATCGTTGGTC 120
Query 331 ACTCATGGAGCTCGATCAGAAGCTAGGCTTTGGCTTTGTAGTGCTCTTTCCACTATTTCT 390
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 121 ACTCATGGAGCTCGATCAGAAGCTAGACTTTGGCTTTGTAGTGCTCTTTCTACTATTTCT 180
Query 391 ATATCTCCTAGCAAGCAACTTAATATCTTCATGAAGTTATTGAGATCAAAACCTAGAAAG 450
||||||||||| |||||||||| ||| |||||||||||||||||||||||||| ||||||
Sbjct 181 ATATCTCCTAGGAAGCAACTTAGTATTTTCATGAAGTTATTGAGATCAAAACCCAGAAAG 240
Query 451 ATGCAGTTTTTATCTCAGGTTT-TGACAATGATGTTTGAGAAGAGACCAAGGAAACTTGG 509
||||||||||||||||| |||| ||||||||||||| || |||||||| |||||||||||
Sbjct 241 ATGCAGTTTTTATCTCA-GTTTCTGACAATGATGTTCGAAAAGAGACCGAGGAAACTTGG 299
Query 510 ATTTTTGTTAGCTAAAAGAAGTTATATACTTGAGAAGTTCTTTGAAGGGAATCAGAAGCG 569
|| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 300 ATCTTTGTTAGCCAAAAGAAGTTATATACTTGAGAAGTTCTTTGAAGGGAATCCGAAGCG 359
Query 570 TATACTAGAGTGGTTTTCTGAGTTTGCTTATGATGGTGGGTCTGATCACAAGA-GAGGTG 628
||||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 360 TATACTAGAGTGGTTCTCTGAGTTTGCTTATGATGGTGGGTCTGATCACAA-ACGTGGTG 418
Query 629 CAAAAGCATTGGCGCAGTTTGCGTTTGCGAATCGGGATATTTGTTGGGAAGAGCTTGAGT 688
|||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||
Sbjct 419 CAAAAGCATTGGCGCAGTTTGCGTTTGCGAATCGGGATATATGTTGGGAAGAGCTCGAGT 478
Query 689 GGCGAGGTAAACATGGGCAATCGCCTGCGGTTGTAGCTACAAAGCCTCATTATCTTCTTG 748
||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 479 GGCGAGGTAAACACGGGCAATCGCCTGCGGTTGTTGCTACAAAGCCTCATTATCTTCTTG 538
Query 749 ATTTAGACGTTG-AAAGAACTATTCAGAATTTTCTTGACAATGTCCCTGAGTTCTGGTCT 807
|||| || | || || |||| ||| |||||||||| |||||||| ||||| |||||||||
Sbjct 539 ATTTGGATG-TGCAACGAACCATTGAGAATTTTCTCGACAATGTTCCTGAATTCTGGTCT 597
Query 808 TCCAATGAGTTTGCTGAGTCGCTTAAAGATGGACAGATTTTGTTTCTTGATACCAAATTC 867
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 598 TCCAATGAGTTTGCTGAGTCGCTTAAAGATGGACAGATTTTGTTTCTTGACACGAAATTC 657
Query 868 TTTATAGATCTCTTTATTCGTTTCATGTATGAAGAAGATATGTATGATGTGTGGGATGCT 927
|||||||||||||||||| ||||||||||||||||||||||| ||||||| ||||||| |
Sbjct 658 TTTATAGATCTCTTTATTGGTTTCATGTATGAAGAAGATATGGATGATGTTTGGGATGTT 717
Query 928 GTTGAGGAGTTTCTTAGGGAGGAGTCTTTCTCTTCGTTAACACAGCATCTCCTTATCACT 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GTTGAGGAGTTTCTTAGGGAGGAGTCTTTCTCTTCGTTAACACAGCATCTCCTTATCACT 777
Query 988 CTTGAAGAACGTGACTTGTGTCGATTTCTTGAATTGCTTGGTAACTATTTTGAGCCAGGT 1047
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 778 CTTGAAGAACGTGACTTGTGTCGATTTCTTGAATTGCTTGGCAACTATTTCGAGCCAAGT 837
Query 1048 ATTGAATCTTGGGATAGTGGTGACTCGTCTCGCTGGCTTGGGGTTCTTCTTTCAAGATAT 1107
|||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||
Sbjct 838 ATTGAATCTTGGGATAGTGGTGACTCGTCTTGCTGGCTCGGGGTTGTTCTTTCAAGATAT 897
Query 1108 GTTGACACAGAATCTATCGACGAGCTGCTGCTGCTGAGTTCTATTATCAATCAAGGTCGT 1167
|||||||||||||| || ||||||||||||||||||| |||||||||||| |||||||||
Sbjct 898 GTTGACACAGAATCGATTGACGAGCTGCTGCTGCTGAATTCTATTATCAACCAAGGTCGT 957
Query 1168 CAGTTGCTGCGGCTTGTACGTGATGAAAACGGGAATGATGAGGGAGAACTGTTGAAAGAA 1227
||| ||||||||||||||||||||||||||||||||||||| |||||| || ||||||||
Sbjct 958 CAGCTGCTGCGGCTTGTACGTGATGAAAACGGGAATGATGAAGGAGAAATGCTGAAAGAA 1017
Query 1228 ACCATGGCAGAGATATGCAGAGGTTTGGAAAACGA-AAGTAGCTTTTCTGTAATTCTGAG 1286
|||||||||||||| ||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 1018 ACCATGGCAGAGATCTGCAGAGGTTTGGAAAACGGCAA-TAGCTTTTCTCTAATTCTGAG 1076
Query 1287 AGAGCTCTCGAAGATGAAACACATACAGGTGATAAAATTACTCGGGCTACTTTCTTGGAC 1346
|||||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1077 AGAGCTTTCGAAGATGAAACACATAGAGGTGATAAAATTACTCGGGTTACTTTCTTGGAC 1136
Query 1347 TATTCACTTCAGACTATCAGAGGAATGTCAGACGCCAGATTCTTGGGAGCTTCTATTTAG 1406
||||||||| ||| ||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1137 TATTCACTTTAGATTATCAGAGGAATGTCAGACTCCAGATTCATGGGAGCTTCTATTTAG 1196
Query 1407 AGAAAATGGGATTGAGTTCCGCAGGTCTAGTGACCATTCGTTGCTAAGCTATAATGGATT 1466
|||||| ||||||||||||||||| ||| ||||||| |||||||||||| ||||||||||
Sbjct 1197 AGAAAACGGGATTGAGTTCCGCAGCTCTGGTGACCACTCGTTGCTAAGCCATAATGGATT 1256
Query 1467 CTCTGAAGAAAGTGAATCTGACTCAGATAGTAGAAGCCGTGTGTCTaagaagaggcacaa 1526
|||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||||||
Sbjct 1257 CTCTGAAGAAAGTGAATCTGACTCAGATAGTAGAAGCCATGTTTCTAAAAAGAGGCACAA 1316
Query 1527 gagggagaagaagaaaagaaagaagaaaaagaaga-G-GG-CTTTtgatgatgatgatga 1583
|||||||||||||| |||||||| ||| ||||||| | || |||||||||||||||||||
Sbjct 1317 GAGGGAGAAGAAGACAAGAAAGATGAAGAAGAAGATGAGGGCTTTTGATGATGATGATGA 1376
Query 1584 t--cg-tg-----g-tgatgatgaGCTTTTAGATCTGCATTCAA-TAAGTCGAAGTTGGT 1633
| || || | ||||||||||||| ||| ||||| | ||| ||| |||||||||||
Sbjct 1377 TGACGATGATCTCGGTGATGATGAGCTTATAGGTCTGCGT-CAAATAAATCGAAGTTGGT 1435
Query 1634 TGCTATCTACTGATGGGTTTTCTGCAACATGGACCAGTGTGGATTTACCGGAATACATCG 1693
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1436 TGCTATCTACTGATGGGTTTTCTGCAACATGGACCAGTGTGGATTTACCGGAGTACATCG 1495
Query 1694 CAAAGTATTGTTTGTCGACATGGATGAAGGGGTTATTAGCTAGACAAAAATGA 1746
||| |||||||||||| |||||||||||| ||||| |||||||||||||||||
Sbjct 1496 CAAGGTATTGTTTGTCCACATGGATGAAGTGGTTACTAGCTAGACAAAAATGA 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81132221850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5