BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48350.1

Length=1139
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg331244 jgi|Araly1|331244|fgenesh1_pm.C_scaffold_8000587           394    8e-109


> Ahg331244 jgi|Araly1|331244|fgenesh1_pm.C_scaffold_8000587
Length=540

 Score =  394 bits (213),  Expect = 8e-109
 Identities = 231/240 (96%), Gaps = 0/240 (0%)
 Strand=Plus/Plus

Query  608  GCTTGAGAGTGAGTTTGGTTTGACCTGCAAGAATGTTGTTGAGATTGGACCCGCCACATG  667
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  288  GCTTGAGAGTGAGTTTGGTTTGACCTGCAAGAATGTTGTTGAGATTGGACCCGCCACATG  347

Query  668  GAATCTGACCAATATGACGACCGATGTGAAATTTAGGATCAGTGCTATTGTTTCGACTGA  727
            ||| ||||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||
Sbjct  348  GAAGCTGACCAATATGACGGCCGATGTGAAATTTAGGCTCAGTACTATTGTTTCGACTGA  407

Query  728  GAGACCATCAAATGCCGTACTTGAGGACTGGGAGAAATTTGTTCTCAATAAGAACCAGAT  787
            ||||||| |||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct  408  GAGACCAACAAATGCCGTACTTGACGACTGGGAAAAATTTGTTCTCAATAAGAACCAGAT  467

Query  788  CAAGCTTGCAGCCTCCAATGCATACTTTGCTTTTGGCATTGGGAACATTTTGTTGGATGT  847
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct  468  AAAGCTTGCAGCCTCCAATGCATACTTTGCTTTTGGCATTGGGAACATTCTGTTGGATGT  527


 Score =  364 bits (197),  Expect = 6e-100
 Identities = 231/248 (93%), Gaps = 0/248 (0%)
 Strand=Plus/Plus

Query  264  ATGTCTTCTTCCATTGTTAAAATCGGAATAGATAGCATCAAAACAACGGTAACTGAAAAA  323
            |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  1    ATGTCTTCGTCCATTGTTAAAATTGGAATAGATAGCATCAAAACAACGGTAACTGAAAAA  60

Query  324  GAGCGAGATATCAACCGTCTTGTGAAGACATTCTTGTCCAACAAAAACAACAGGAAGAAG  383
            ||| | |||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  61   GAGAGCGATAGCAACCGTCTCGTGAAGACATTCTTGTCCAACAAAAACAACAGGAAGAAG  120

Query  384  ATCATTGGTCTTGATACCGAACGGGTGCAAAAGGGAAGAAAGCTAAATAAGACCGTCTTG  443
            || ||||||||||| |||||||  ||||||||||||||||| ||||||||||| ||||||
Sbjct  121  ATAATTGGTCTTGACACCGAACACGTGCAAAAGGGAAGAAATCTAAATAAGACTGTCTTG  180

Query  444  TTGCAGCTCTGCGATGGTGACAATTGTCTAATAGTACAACTTCCCGATGAAGATGAAGAT  503
            ||||||||||| ||||| ||||||||||||||||||||||||||| |||||| ||||| |
Sbjct  181  TTGCAGCTCTGTGATGGAGACAATTGTCTAATAGTACAACTTCCCAATGAAGGTGAAGGT  240

Query  504  GAAGGTGA  511
            ||||||||
Sbjct  241  GAAGGTGA  248



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 42468929538


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5