BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48360.1
Length=2569
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494887 jgi|Araly1|494887|fgenesh2_kg.8__703__AT5G48360.1 3742 0.0
> Ahg494887 jgi|Araly1|494887|fgenesh2_kg.8__703__AT5G48360.1
Length=2556
Score = 3742 bits (2026), Expect = 0.0
Identities = 2388/2554 (94%), Gaps = 60/2554 (2%)
Strand=Plus/Plus
Query 52 AGaaaaaaaTGCAGAACTTTTGGTTCGCCATCTTCTTCTTCCTGCTAACATGCGCACCAC 111
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 24 AGAAAAAAATGCAGAACTTTTGGTTCACCATCTTCTTCTTCCTGCTAACATGCGCACCAC 83
Query 112 CGTCTCCTTTATCCTACGCATCCACCGTAACTCTCAGCCGTCGTCTCCTCTATGACTATG 171
|||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| |
Sbjct 84 CGTCTCTTTTATCCTACGCATCCGCCGTAACTCTCAGCCGTCGTCTCCTCTACGACTACG 143
Query 172 AATCAcctcttcctcttcctctatcccccattagccctcctttcttccctcttgaatcct 231
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 144 AATCACCTCTTCCTCTTCCTCTATCTCCCATTAGCCCTCCTTTCTTCCCTCTTGAATCCT 203
Query 232 cccctccttctccacctcctcctcttccgcctactcctccGACAACTTTCGCCGTCTTTC 291
| ||||||||||| ||||| |||||||| |||||||||||||| ||||||||||||||||
Sbjct 204 CTCCTCCTTCTCCTCCTCCACCTCTTCCTCCTACTCCTCCGACCACTTTCGCCGTCTTTC 263
Query 292 CAACTTTTCCGGCTAATATCTCCGCCTTAGTCCTCCCTCGCTCCTCTAAACCACACCACA 351
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 264 CTACTTTTCCGGCTAACATCTCCGCCTTAGTCCTCCCTCGCTCCTCTAAACCACACCACA 323
Query 352 CTTCACCTACACTTCTCCTCCCAGCTCTCTCCGCCGTTCTTGTCATTGCTACAGTCATAG 411
||||||||||||||||||||||||||||||||||||| |||| | | |||||||||||||
Sbjct 324 CTTCACCTACACTTCTCCTCCCAGCTCTCTCCGCCGTCCTTGCCGTCGCTACAGTCATAG 383
Query 412 GCTTAGCCTTGTTTCTCTACGGCCGCCACCGAGGGC-AAACTCGTCATTTAAAGAACTCT 470
|||| || |||||||||||||||||||||| ||||| |||| |||||||| ||| |||||
Sbjct 384 GCTTGGCTTTGTTTCTCTACGGCCGCCACCAAGGGCAAAAC-CGTCATTTCAAGGACTCT 442
Query 471 CATTGTTC-TAGTAGCAACAC-A--AGCAGCTATGGTGATGAACAGAGTCATATCACCAC 526
| || || |||||||||||| | |||||||||| ||||||||||||||| || || ||
Sbjct 443 CCTT-CTCGTAGTAGCAACACAAGCAGCAGCTATGATGATGAACAGAGTCACATTACTAC 501
Query 527 TAACTTCAACATGGCTGCTACTACTTCTCCTTCAGAAGTTTTTTACCTCAATACAGAGGA 586
||||||||| ||||||||||||||||||||||||||||| || ||| |||||||||||||
Sbjct 502 TAACTTCAATATGGCTGCTACTACTTCTCCTTCAGAAGTCTTCTACATCAATACAGAGGA 561
Query 587 ATCTGACCATATTAGAACC---GGAGGTACTTTTTTCTTGAAGCAAGACTCGCCGGAGAT 643
||||||||||||| ||||| ||||| |||| |||||||||||||||||||||||||||
Sbjct 562 ATCTGACCATATTCGAACCGGAGGAGGAACTTGTTTCTTGAAGCAAGACTCGCCGGAGAT 621
Query 644 ACGACCATTACCACCATTACCTCCTCGTAGCTTCCACCATAACAACTATGAAACAGAGGT 703
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 622 ACGACCATTACCACCATTACCTCCTCGTAGCTTCCACCACAACAACTATGAAACAGAGGT 681
Query 704 AAACgaagaagacgaagaagaagaagaagaTGTGTTCTTCTCACCAATGGCTTCTCTCCC 763
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 682 AAACGAAGAAGACGAAGAAGAAGAAGAAGATGTGTTCTTTTCACCAATGGCTTCTCTCCC 741
Query 764 TGG--CTCAGCGAACTCAAGCCCTTCTCATTCATGCTCTTCCTCCTGCTCCGGTTGGGTT 821
||| |||| ||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 742 TGGTTCTCA--GAACTCAAGCCCTTCTCATTCCTGCTCTTCCTCCTGCTCCGGTTGGGTT 799
Query 822 TCTCCAGCTAGGTCATTCTCTATCACCATGTCTCCACCAAACCCTAGATACTCAGACGCC 881
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 800 TCTCCAGCTAGGTCATTCTCTATCACCATGTCTCCACCAAACCCTAGATACTCAGACGCC 859
Query 882 ACTAACCTCCAGTCTCCGTCACCGGAGAGACTAAGAGTAAGGAAGAACTATAACGGAAAT 941
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 860 ACTAACCTTCAGTCTCCGTCACCGGAGAGACTAAGAGTAAGAAAGAACTATAACGGAAAT 919
Query 942 GGGTCGTCTTCTCTAAGAATGTTTAGCTTCTGGAATCAAAATATGGGATTTGGGTTTCCT 1001
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 920 GGGTCGTCGTCTTTAAGAATGTTTAGCTTCTGGAATCAAAATATGGGATTTGGGTTTCCT 979
Query 1002 CGTATCTCCTCTGCTTCTACTTCACCAGACAGAGGATTCATAAGAACACCACTTTCGTCT 1061
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 980 CGTATCTCCTCTGCTTCTACTTCACCAGACAGAGGATTCATAAGAACACCACTTTCTTCT 1039
Query 1062 CTCTACTCTTCAGTTTCCACTTCTCCTGATGGGTTATTCCGGAAGTTTCTCGATAGTTCG 1121
||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1040 CTCTACTCTTCAGTTTCTACTTCTCCAGATGGGTTATTCCGGAAGTTTCTCGATAGTTCG 1099
Query 1122 CCGCCGATTTGGAATGACTTTAGTCGGAATGTGAAGTCTGTTTTGCTCTCTCACACTGCG 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1100 CCGCCGATTTGGAATGACTTTAGTCGGAATGTGAAGTCTGTTTTGCTCTCTCATACTGCG 1159
Query 1182 TCATCAAGAAGAGATTTTGTTATCAACATTGGTGAATCTTCTTCTCAACAGAGCAAAGT- 1240
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1160 TCATCAAGAAGAGATTTTGTTATCAACATTGGTGAATCTTCTTCTCAACAGAGGAAAGTA 1219
Query 1241 -T--C----C-TGCTCTTCCTCCTCCGACCAGACCACCTCCTCTTGTTCCACCGTCTCAA 1292
| | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1220 GTAACAGTTCCTGCTCTTCCTCCTCCGACCAGACCACCTCCTCTTGTTCCACCGTCTCAA 1279
Query 1293 CCTTTTGTGGTTCAAAATGATGTAAAAAAGCAATCTTTTTCAGACCAACCTCCCAAACAG 1352
|||||| |||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 1280 CCTTTTATGGTTCAAAATGATGTAAAAAAGCTCTCTTTTTCCGACCAACCTCCCAAACAG 1339
Query 1353 CTGCATTGGGAACGTCTTAGATCGAGCTCTT-CTAAATTGAGCAAAGAGATGGTAGAGAC 1411
|||| |||||| ||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 1340 CTGCCTTGGGATCGTCTTAGATCGAGCTCTTTC-AAATTGAGCAAAGAGATGGTAGAGAC 1398
Query 1412 TATGTTCATTGCAAACTCGTCAAATCCAAGAGATCTTCCGATTC--A---AA-AT--CAA 1463
||||||||||||||||||||| |||||||||||||||||||||| | || | |||
Sbjct 1399 TATGTTCATTGCAAACTCGTCTAATCCAAGAGATCTTCCGATTCTTAGTCAAGAAAGCAA 1458
Query 1464 -GTTTTAGATCCAAGAAAGGCACAGAATATTGCTACTCTGCTTCAACTACTTAACTTAAG 1522
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1459 AGTTTTAGATCCAAGAAAGGCTCAGAATATTGCTACTCTGCTTCAACTACTTAACTTAAG 1518
Query 1523 CACTAAGGATGTTTGTCAAGCTCTTCTTGATGGTGACTGTGATGTACTTGGAGCTGAACT 1582
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1519 CACTAAGGATGTTTGTCAAGCTCTTCTTGATGGTGACTGTGGTGTACTTGGAGCTGAACT 1578
Query 1583 TCTTGAGTGTTTATCAAGATTAGCACCTAGTAAAGAAGAAGAGAGGAAGTTGAAGAGCTT 1642
||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1579 TCTTGAGTGTTTATCGAGATTGGCACCTAGTAAAGAAGAAGAGAGGAAGTTGAAGAGCTA 1638
Query 1643 TAGTGATGGTTCAGAGATTGGTCCAGCTGAGAGGTTTCTTAAGGAATTGCTTCATGTGCC 1702
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1639 TAGTGATGATTCAGAGATTGGTCCAGCTGAGAGGTTTCTTAAGGAATTGCTTCATGTGCC 1698
Query 1703 TTTTGTGTTTAAACGTGTTGATGCATTGCTTTTTGTGGCTAATTTCCATTCGGAGATCAA 1762
||||| ||||||||| |||||||||||||| ||||||||||||||||| || ||||||||
Sbjct 1699 TTTTGCGTTTAAACGGGTTGATGCATTGCTCTTTGTGGCTAATTTCCACTCCGAGATCAA 1758
Query 1763 ACGTCTCAGAAAATCATTCAGTGTTGTTCAGGTTGCTTGTGAAGAACTAAGAAATAGTAG 1822
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct 1759 ACGTCTCAGAAAATCATTCAGTGTTGTTCAGACTGCTTGTGAAGAACTAAGGAATAGTAG 1818
Query 1823 AATGTTTTCGATACTTCTTGA-AGCTATACTGAAGACAGGAAACATGATGAGTGTTAGAA 1881
|||||||||||||||||| || |||||| |||||||||||||||| ||||| ||||||||
Sbjct 1819 AATGTTTTCGATACTTCT-GATAGCTATTCTGAAGACAGGAAACAAGATGAATGTTAGAA 1877
Query 1882 CAAACCGCTGTGGGGATGCGGATGCCTTC-AAACTCGACACGCTCCTCAAGCTCGTTGAT 1940
||||||| || || ||||| |||| ||| |||||||||| ||||||||||||||||||
Sbjct 1878 CAAACCGGTGCGGTGATGCTCATGC-TTCCAAACTCGACATGCTCCTCAAGCTCGTTGAG 1936
Query 1941 GTCAAGGGATTAGATGGAAGAAGCAGTCTCTTGCATTTTGTTGTTCAGGAAATGATGAAA 2000
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1937 GTCAAGGGATTAGATGGAAGAAGCAGTCTCTTGCATTTCGTTGTTCAGGAAATGATTAAA 1996
Query 2001 TCAGAAGGCAGTGTGAGAGCTTTAGAAGGCATCAGAAACCTGAATACAGAACTGAGCAAT 2060
||||| |||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1997 TCAGATGGCAGTATGAGAGCTTTAGAAGGCTTCAGAAACCTGAATTCAGAACTGAGCAAT 2056
Query 2061 GTCAAGAAATCGGCAGACATTGAGTATGGTGTACTAAGAAGCAATGTGTC-AAGGATTTG 2119
|||||||||||||||||||||||||||||||||||||||||| |||| | ||| ||||
Sbjct 2057 GTCAAGAAATCGGCAGACATTGAGTATGGTGTACTAAGAAGCGATGTCTGGAAGC-TTTG 2115
Query 2120 CCAAGGACTCAAGAACATTGAAGCGCTTTTGCTACTTAGCGAGGAGAGTGGTTCATATGG 2179
|||||||| |||||| | |||| ||||||||||||||||||||||||||| | |
Sbjct 2116 TCAAGGACTTAAGAACGTCGAAGAGCTTTTGCTACTTAGCGAGGAGAGTGG---A---G- 2168
Query 2180 AGATCAATGGCTGAAGTTCAAGGAGAGGATGACCCGGTTCTTGAAAACCGCTGCAGAGGA 2239
| ||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||
Sbjct 2169 A--TCAATGGCTGAAGTTCAGGGAGAGGATGACCCGATTCTTGAAAGCCGCTGCAGAGGA 2226
Query 2240 GATTGTGAAGATTAAAATACGAGAAAGTTCAACGCTCTCTGCATTGGAAGAGGTCACAGA 2299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2227 GATTGTGAAGATTAAAATACGAGAAAGTTCAACGCTCTCTGCATTGGAAGAGGTCACAGA 2286
Query 2300 GCAGTTCCATGGAGATGCTTCCAAGGAAGGTCACACAATGAGAATCTTCATGATTGTGAG 2359
||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2287 GCAATTCCATGGAGATTCTTCCAAGGAAGGTAACACAATGAGAATCTTCATGATTGTGAG 2346
Query 2360 AGACTTCCTGTCTGTTCTAGACCAAGTGTGTAAGGAAATGGGAGACTGATTCCCATTGTA 2419
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2347 AGACTTCCTGTCTGTGCTAGACCAAGTGTGTAAGGAAATGGGAGACTGAT-CCCATTGTA 2405
Query 2420 AGATTTTTAATGTAATGATTAGGAACGCATCTCTAGTTTCATTGTATTGTAACCAG-TAT 2478
||||||||||||||||||||||||||| ||||||||||||| ||| | ||||| || |||
Sbjct 2406 AGATTTTTAATGTAATGATTAGGAACGTATCTCTAGTTTCAGTGTCT-GTAAC-AGGTAT 2463
Query 2479 GACTAACGCCATTTCTGGATAATTCTGTATGAGTTTTTGGAAGACAATTCATTAGGTTTT 2538
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2464 GACTAACGCC-TATCTGGATAATTCTGTATGAGTTTTTGGAAGACAATTCATTAGGTTTT 2522
Query 2539 GATGCTAT------GATTCTAATTTTGATGCTTT 2566
|||||||| ||||||| ||||||||||||
Sbjct 2523 GATGCTATAACTTAGATTCTAGTTTTGATGCTTT 2556
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96863493035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5