BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48370.1 Length=1532 Score E Sequences producing significant alignments: (Bits) Value Ahg494889 jgi|Araly1|494889|fgenesh2_kg.8__705__AT5G48370.2 2019 0.0 > Ahg494889 jgi|Araly1|494889|fgenesh2_kg.8__705__AT5G48370.2 Length=1449 Score = 2019 bits (1093), Expect = 0.0 Identities = 1264/1347 (94%), Gaps = 10/1347 (1%) Strand=Plus/Plus Query 18 CTTCCCCCATTTTCAAAAACCCAGAAACAAAGCTTCTCACTTTCTTCACCCAACCATGAA 77 ||||||| ||||||| ||||||||||| |||||||||||||||||||| ||||||||||| Sbjct 68 CTTCCCCAATTTTCATAAACCCAGAAAGAAAGCTTCTCACTTTCTTCATCCAACCATGAA 127 Query 78 TTCCCCAAGACCCATCTCCGTCGTCTCCACCTTCGCTTCACCATCCTCCACC-TCTGACC 136 ||| ||||||||||||||||||||||||||||||||||||||||||||| || | |||| Sbjct 128 TTCACCAAGACCCATCTCCGTCGTCTCCACCTTCGCTTCACCATCCTCC-CCTTGTGACT 186 Query 137 CAACCCGAA-AACCCT-TAAGCTTATGGCCAGGTATGTACCATTCACCTGTCACCACCGC 194 ||| || || || ||| | || |||||||| ||||||||||| ||||| |||||||| || Sbjct 187 CAA-CC-AAGAAGCCTCTGAGTTTATGGCCTGGTATGTACCACTCACCCGTCACCACAGC 244 Query 195 TCTTTGGGAAGCCAGATCCAAAATCTTCGAATCTCTTCTCGATCCTCCTAAAGACGCTCC 254 ||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 245 TCTATGGGAAGCCAGATCCAAAATCTTCGAATCACTTCTTGATCCTCCTAAAGACGCTCC 304 Query 255 ACCACAGAGCCAGCTTCTCACCAGAACTCCTTCTCATAGCCGTACCACCATTTTCTACCC 314 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 305 ACCACAGAGCCAGCTTCTCACCAGAACACCTTCTCATAGCCGTACCACCATTTTCTACCC 364 Query 315 TTTCTCCACTGATTTCATTCTCAGAGAGCAATACAGAGATCCTTGGAACGAGGTCCGTAT 374 |||||| |||||||||||||| | || |||||||||||||| ||||||||||||||||| Sbjct 365 TTTCTCTTCTGATTTCATTCTCCGGGAACAATACAGAGATCCATGGAACGAGGTCCGTAT 424 Query 375 CGGGATCTTGCTCGAAGATCTCGATGCTTTAGCCGGCACTATCTCCGTCAAGCATTGTTC 434 |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 425 TGGGATCTTGCTCGAAGATCTCGATGCTTTAGCCGGCACTATCTCTGTTAAGCATTGTTC 484 Query 435 TGATGATGATAGTACAACGAGGCCACTCTTGCTTGTTACAGCTTCTGTTCATAAGATTGT 494 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TGATGATGATAGTACAACGAGGCCACTCTTGCTTGTTACAGCTTCTGTTCATAAGATTGT 544 Query 495 CTTAAAGAAGCCGATTTGTGTCGACATTGATCTCAAGATTGTTGCTTCTGTCATTTGGGT 554 || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 545 ATTGAAGAAGCCGATTTGTGTCGACATTGATCTCAAGATTGTTGCTTCTGTCATTTGGGT 604 Query 555 TGGTCGTTCATCTATCGAGATTCAACTCGAAGTTATGCAATCCGAATTGAAAGATGTCAA 614 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 605 TGGTCGTTCTTCTATCGAGATTCAACTCGAAGTTATGCAATCCGAATTGAAAGATGTCAA 664 Query 615 GGCTTCTTCAGATTCTGTTGCTTTAACTGCAAATTTCATTTTTGTGGCGCGTGATTCTAA 674 ||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| || || Sbjct 665 GGCTTCTTCGGATTCGGTTGCTTTAACTGCTAATTTCATTTTTGTGGCCCGTGACTCAAA 724 Query 675 GACTGGTAAAGCTGCTCCTATCAACCGTCTTTCTCCTGAAACCGAGGTTGAGAAA-CTTC 733 ||||||||||||||||||||| ||||| |||||||||||||||||||| || ||| ||| Sbjct 725 GACTGGTAAAGCTGCTCCTATTAACCGGCTTTCTCCTGAAACCGAGGTCGA-AAAGCTTT 783 Query 734 TCTTTGAGGAAGCTGAAGCTAGGAATAACTTAAGGAAGAAGAAGAGAGGAGGTGACAGAA 793 | ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 784 TATTTGAGGAAGCTGAAGCTAGGAATAACTTGAGGAAGAAGAAGAGAGGAGGTGACAGAA 843 Query 794 GGGAATTTGATCACGGGGAGTGTAAGAAGCTTGAGGCTTGGTTGGCTGAAGGAAGGATTT 853 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | Sbjct 844 GGGAATTTGATCACGGGGAGTGTAAGAAGCTCAAGGCTTGGTTGGCTGAAGGAAGGATCT 903 Query 854 TCTCTGACATGCCAGCTCTTGCTGACAGAAACAGCATTCTTCTTAAAGACACTCGTCTTG 913 ||||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||| Sbjct 904 TCTCTGATATGCCAGCTCTTGCTGACAGAAACAGCATTCTTCTTAAAGATACCCGTCTTG 963 Query 914 AGAATTCGCTGATATGCCAACCGCAGCAGAGGAACATCCATGGTAGGATCTTTGGAGGGT 973 | |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 964 AAAATTCGCTAATATGTCAACCGCAGCAGAGGAACATCCATGGGAGGATCTTTGGAGGGT 1023 Query 974 TTTTAATGCATAGAGCATTTGAGTTGGCTTTCTCTACTGCTTATACGTTTGCGGGTCTAG 1033 |||| ||||| ||||| ||||||||||| ||||| || |||||||||||||||||||||| Sbjct 1024 TTTTGATGCACAGAGCGTTTGAGTTGGCCTTCTCCACAGCTTATACGTTTGCGGGTCTAG 1083 Query 1034 TGCCTTACTTCTTAGAAGTTGATCACGTCGATTTCCTAAGACCGGTGGACGTCGGGGATT 1093 ||||||||||||||||||||||||||||||||||||||||||||||||| || || |||| Sbjct 1084 TGCCTTACTTCTTAGAAGTTGATCACGTCGATTTCCTAAGACCGGTGGATGTTGGTGATT 1143 Query 1094 TCTTACGTTTCAAATCCTGTGTTCTTTACACTCAACTGGATAAAC-AGGATTGTCCGCTC 1152 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1144 TCTTACGTTTCAAATCCTGTGTTCTTTACACTCAACTGGATAAACTAG-ATTGTCCGCTC 1202 Query 1153 ATCAATATCGAAGTTGTTGCTCATGTTACAAGTCCAGAGATTCGCTCCAGTGAGGTTTCA 1212 |||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||| Sbjct 1203 ATCAATATCGAAGTTGTTGCCCATGTTACAAGCCCAGAAATTCGTTCCAGTGAGGTTTCT 1262 Query 1213 AATACATTCTACTTCAAGTTCACTGTAAGGCCAGAGGCAAAGGCCAGAAACAATGGGTTT 1272 ||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||| Sbjct 1263 AATACATTCTACTTCAAGTTCACTGTACGACCCGAGGCAAAGGCCAGAAACAATGGGTTT 1322 Query 1273 AAACTTCGAAATGTAGTTCCTGCCACAGAGGAAGAAGCTCGTCATATCCTCGAGCGCATG 1332 || |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1323 AAGCTTCGAAACGTAGTTCCTGCCACAGAGGAAGAAGCTCGTCATATCCTCGAGCGCATG 1382 Query 1333 GATGCAGAAGCTTTGAAGTCAAGCAAA 1359 ||||||||||||||||| || |||||| Sbjct 1383 GATGCAGAAGCTTTGAACTCGAGCAAA 1409 Score = 69.4 bits (37), Expect = 7e-11 Identities = 37/37 (100%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 1434 TATCCTCTGACCACAAATTAACTAGAAATGTAGATGC 1470 ||||||||||||||||||||||||||||||||||||| Sbjct 1413 TATCCTCTGACCACAAATTAACTAGAAATGTAGATGC 1449 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57363908970 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5