BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48370.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494889 jgi|Araly1|494889|fgenesh2_kg.8__705__AT5G48370.2 2019 0.0
> Ahg494889 jgi|Araly1|494889|fgenesh2_kg.8__705__AT5G48370.2
Length=1449
Score = 2019 bits (1093), Expect = 0.0
Identities = 1264/1347 (94%), Gaps = 10/1347 (1%)
Strand=Plus/Plus
Query 18 CTTCCCCCATTTTCAAAAACCCAGAAACAAAGCTTCTCACTTTCTTCACCCAACCATGAA 77
||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 68 CTTCCCCAATTTTCATAAACCCAGAAAGAAAGCTTCTCACTTTCTTCATCCAACCATGAA 127
Query 78 TTCCCCAAGACCCATCTCCGTCGTCTCCACCTTCGCTTCACCATCCTCCACC-TCTGACC 136
||| ||||||||||||||||||||||||||||||||||||||||||||| || | ||||
Sbjct 128 TTCACCAAGACCCATCTCCGTCGTCTCCACCTTCGCTTCACCATCCTCC-CCTTGTGACT 186
Query 137 CAACCCGAA-AACCCT-TAAGCTTATGGCCAGGTATGTACCATTCACCTGTCACCACCGC 194
||| || || || ||| | || |||||||| ||||||||||| ||||| |||||||| ||
Sbjct 187 CAA-CC-AAGAAGCCTCTGAGTTTATGGCCTGGTATGTACCACTCACCCGTCACCACAGC 244
Query 195 TCTTTGGGAAGCCAGATCCAAAATCTTCGAATCTCTTCTCGATCCTCCTAAAGACGCTCC 254
||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 245 TCTATGGGAAGCCAGATCCAAAATCTTCGAATCACTTCTTGATCCTCCTAAAGACGCTCC 304
Query 255 ACCACAGAGCCAGCTTCTCACCAGAACTCCTTCTCATAGCCGTACCACCATTTTCTACCC 314
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 305 ACCACAGAGCCAGCTTCTCACCAGAACACCTTCTCATAGCCGTACCACCATTTTCTACCC 364
Query 315 TTTCTCCACTGATTTCATTCTCAGAGAGCAATACAGAGATCCTTGGAACGAGGTCCGTAT 374
|||||| |||||||||||||| | || |||||||||||||| |||||||||||||||||
Sbjct 365 TTTCTCTTCTGATTTCATTCTCCGGGAACAATACAGAGATCCATGGAACGAGGTCCGTAT 424
Query 375 CGGGATCTTGCTCGAAGATCTCGATGCTTTAGCCGGCACTATCTCCGTCAAGCATTGTTC 434
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 425 TGGGATCTTGCTCGAAGATCTCGATGCTTTAGCCGGCACTATCTCTGTTAAGCATTGTTC 484
Query 435 TGATGATGATAGTACAACGAGGCCACTCTTGCTTGTTACAGCTTCTGTTCATAAGATTGT 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 TGATGATGATAGTACAACGAGGCCACTCTTGCTTGTTACAGCTTCTGTTCATAAGATTGT 544
Query 495 CTTAAAGAAGCCGATTTGTGTCGACATTGATCTCAAGATTGTTGCTTCTGTCATTTGGGT 554
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 545 ATTGAAGAAGCCGATTTGTGTCGACATTGATCTCAAGATTGTTGCTTCTGTCATTTGGGT 604
Query 555 TGGTCGTTCATCTATCGAGATTCAACTCGAAGTTATGCAATCCGAATTGAAAGATGTCAA 614
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 605 TGGTCGTTCTTCTATCGAGATTCAACTCGAAGTTATGCAATCCGAATTGAAAGATGTCAA 664
Query 615 GGCTTCTTCAGATTCTGTTGCTTTAACTGCAAATTTCATTTTTGTGGCGCGTGATTCTAA 674
||||||||| ||||| |||||||||||||| ||||||||||||||||| ||||| || ||
Sbjct 665 GGCTTCTTCGGATTCGGTTGCTTTAACTGCTAATTTCATTTTTGTGGCCCGTGACTCAAA 724
Query 675 GACTGGTAAAGCTGCTCCTATCAACCGTCTTTCTCCTGAAACCGAGGTTGAGAAA-CTTC 733
||||||||||||||||||||| ||||| |||||||||||||||||||| || ||| |||
Sbjct 725 GACTGGTAAAGCTGCTCCTATTAACCGGCTTTCTCCTGAAACCGAGGTCGA-AAAGCTTT 783
Query 734 TCTTTGAGGAAGCTGAAGCTAGGAATAACTTAAGGAAGAAGAAGAGAGGAGGTGACAGAA 793
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 784 TATTTGAGGAAGCTGAAGCTAGGAATAACTTGAGGAAGAAGAAGAGAGGAGGTGACAGAA 843
Query 794 GGGAATTTGATCACGGGGAGTGTAAGAAGCTTGAGGCTTGGTTGGCTGAAGGAAGGATTT 853
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 844 GGGAATTTGATCACGGGGAGTGTAAGAAGCTCAAGGCTTGGTTGGCTGAAGGAAGGATCT 903
Query 854 TCTCTGACATGCCAGCTCTTGCTGACAGAAACAGCATTCTTCTTAAAGACACTCGTCTTG 913
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 904 TCTCTGATATGCCAGCTCTTGCTGACAGAAACAGCATTCTTCTTAAAGATACCCGTCTTG 963
Query 914 AGAATTCGCTGATATGCCAACCGCAGCAGAGGAACATCCATGGTAGGATCTTTGGAGGGT 973
| |||||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 964 AAAATTCGCTAATATGTCAACCGCAGCAGAGGAACATCCATGGGAGGATCTTTGGAGGGT 1023
Query 974 TTTTAATGCATAGAGCATTTGAGTTGGCTTTCTCTACTGCTTATACGTTTGCGGGTCTAG 1033
|||| ||||| ||||| ||||||||||| ||||| || ||||||||||||||||||||||
Sbjct 1024 TTTTGATGCACAGAGCGTTTGAGTTGGCCTTCTCCACAGCTTATACGTTTGCGGGTCTAG 1083
Query 1034 TGCCTTACTTCTTAGAAGTTGATCACGTCGATTTCCTAAGACCGGTGGACGTCGGGGATT 1093
||||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 1084 TGCCTTACTTCTTAGAAGTTGATCACGTCGATTTCCTAAGACCGGTGGATGTTGGTGATT 1143
Query 1094 TCTTACGTTTCAAATCCTGTGTTCTTTACACTCAACTGGATAAAC-AGGATTGTCCGCTC 1152
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1144 TCTTACGTTTCAAATCCTGTGTTCTTTACACTCAACTGGATAAACTAG-ATTGTCCGCTC 1202
Query 1153 ATCAATATCGAAGTTGTTGCTCATGTTACAAGTCCAGAGATTCGCTCCAGTGAGGTTTCA 1212
|||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||
Sbjct 1203 ATCAATATCGAAGTTGTTGCCCATGTTACAAGCCCAGAAATTCGTTCCAGTGAGGTTTCT 1262
Query 1213 AATACATTCTACTTCAAGTTCACTGTAAGGCCAGAGGCAAAGGCCAGAAACAATGGGTTT 1272
||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||
Sbjct 1263 AATACATTCTACTTCAAGTTCACTGTACGACCCGAGGCAAAGGCCAGAAACAATGGGTTT 1322
Query 1273 AAACTTCGAAATGTAGTTCCTGCCACAGAGGAAGAAGCTCGTCATATCCTCGAGCGCATG 1332
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 AAGCTTCGAAACGTAGTTCCTGCCACAGAGGAAGAAGCTCGTCATATCCTCGAGCGCATG 1382
Query 1333 GATGCAGAAGCTTTGAAGTCAAGCAAA 1359
||||||||||||||||| || ||||||
Sbjct 1383 GATGCAGAAGCTTTGAACTCGAGCAAA 1409
Score = 69.4 bits (37), Expect = 7e-11
Identities = 37/37 (100%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1434 TATCCTCTGACCACAAATTAACTAGAAATGTAGATGC 1470
|||||||||||||||||||||||||||||||||||||
Sbjct 1413 TATCCTCTGACCACAAATTAACTAGAAATGTAGATGC 1449
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5