BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48375.1
Length=1320
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949247 jgi|Araly1|949247|scaffold_801134.1 688 0.0
Ahg489446 jgi|Araly1|489446|fgenesh2_kg.6__2580__AT5G26000.1 248 7e-65
> Ahg949247 jgi|Araly1|949247|scaffold_801134.1
Length=1589
Score = 688 bits (372), Expect = 0.0
Identities = 489/543 (90%), Gaps = 17/543 (3%)
Strand=Plus/Plus
Query 622 GAACCTTATATCGTTGCACATAACCAGCTTCTTGCTCATGCCAAAGTCGTCCATCTTTAC 681
||||| ||||||||||| || ||||||||||||||||||||| |||||||| ||||||||
Sbjct 675 GAACCCTATATCGTTGCGCACAACCAGCTTCTTGCTCATGCCGAAGTCGTCGATCTTTAC 734
Query 682 CGGAAAAAATATAAGCCAAAACAAAGAGGACAGATTGGAGTTGTGATGATTACTAGATGG 741
||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 735 AGGAAAAAATATAAGCCAAAACAAGGAGGACAGATTGGAGTTGTGATGATAACTAGATGG 794
Query 742 TTTGTTCCATATGATAGCACTCAAGCCAACATAGATGCGACTGAGAGGAACAAAGAATTC 801
||| ||||||||||||||||| ||||||||| | | || ||||||||||||||||| |||
Sbjct 795 TTTATTCCATATGATAGCACTGAAGCCAACAAAAAGGCAACTGAGAGGAACAAAGAGTTC 854
Query 802 TTCTTGGGATGGTTCATGGAGCCACTAACAAAAGGTAAATACCCTGATATCATGAGAAAA 861
|||||||||||||| |||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 855 TTCTTGGGATGGTTTATGGAGCCGCTAACAAAAGGTAAATACCCAGACATCATGAGAAAA 914
Query 862 CTTGTGGGTCGACGCCTTCCAAAGTTCAAT-AAGAAAGAAGCCAAACTTGTAAAGGGTTC 920
|||||||||||||| |||| ||| |||| | || | ||||||||||||||| ||||||||
Sbjct 915 CTTGTGGGTCGACGGCTTCTAAACTTCAGTGAA-AGAGAAGCCAAACTTGTGAAGGGTTC 973
Query 921 ATATGATTTTCTTGGTATCAACTACTACCAAACTCAGTATGTCTATGCCATTCCCGCAAA 980
|||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||
Sbjct 974 ATATGATTTTCTTGGTATCAACTATTACCAAACTCAGTACGTCTATGCCATTCCTGCAAA 1033
Query 981 TCCTCCGAATAGACTCACCGTCCTGAATGACTCGCTCTCAGCATTCTCATATGAAAATAA 1040
|||||||||||||||||||||| |||||||||| || ||||||| |||||||||||||||
Sbjct 1034 TCCTCCGAATAGACTCACCGTCATGAATGACTCACTTTCAGCATACTCATATGAAAATAA 1093
Query 1041 AGATGGTCCCATAGGTCCATGGTTCAATGCAGATAGTTATTACCATCCAAGAGGAATTTT 1100
|||||||||||||||||||||||| | | || ||||||||||||||| |
Sbjct 1094 AGATGGTCCCATAGGTCCATGGTT-A-T-----TA-------CCATCCAAGAGGAATGT- 1138
Query 1101 AAACGTGTTGGAGCACTTCAAAACTAAATACGGAAACCCATTAGTCTATATCACTGAGAA 1160
||||||||||||||||||| ||||||| ||||||||||| |||||||||||||| |||||
Sbjct 1139 AAACGTGTTGGAGCACTTCGAAACTAAGTACGGAAACCCTTTAGTCTATATCACCGAGAA 1198
Query 1161 CGG 1163
|||
Sbjct 1199 CGG 1201
Score = 508 bits (275), Expect = 3e-143
Identities = 441/517 (85%), Gaps = 28/517 (5%)
Strand=Plus/Plus
Query 1 ATGAAGTTTCGTGCACTCGGCTTAGTTCTTCTATTAGCAGTGGAGACTTGCAAAGCTGAA 60
|||||| ||| || |||| ||||||||||||||||||| |||| ||||||||||||||||
Sbjct 21 ATGAAGCTTCTTGGACTCTGCTTAGTTCTTCTATTAGCGGTGGTGACTTGCAAAGCTGAA 80
Query 61 GAGATTACGTGCGAAGAGACCAAGCCATTCACATGTAACCAAACTGATCGTTTCAACAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 81 GAGATTACGTGCGAAGAGACCAAGCCATTCACATGTAACCAAACTGATCGTTTCAACAGA 140
Query 121 AAACATTTCGATGATGACTTCATCTTCGAAGGTGGAAAAG--GCCGTGGCCTTAACGTTT 178
|||||||||||||||||||||||||||| | || | || || || | | |
Sbjct 141 AAACATTTCGATGATGACTTCATCTTCGGTGTTGCATCCTCTGC-GTA-CCAGG-CATGT 197
Query 179 GGGAT-GG-CTTC-ACTCACCGATATCC-A-GAGAAAGGAGGACCCGATTTAGGGAATGG 233
| | || | | ||| | || | | | |||||||||||||||||| ||||||||||
Sbjct 198 GCTAAAGGTCGTGGACTTAACGTT-TGGGATGAGAAAGGAGGACCCGATCTAGGGAATGG 256
Query 234 AGACAGCACTTGTGGATCATATGAGCACTGGCAGAAAGATATAGACGTAATGACCGAACT 293
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 257 AGACAACACTTGTGGATCATATGAGCACTGGCAGAAAGATATAGACGTAATGACCGAACT 316
Query 294 CGGGGTTGACGGCTATAGATTCTCGCTTGCTTGGTCAAGAATCGCTCCAAG-GGAA---T 349
||| |||||||||||||||||||||||||| |||||||||||| ||| || |||| |
Sbjct 317 CGGTGTTGACGGCTATAGATTCTCGCTTGCGTGGTCAAGAATCATTCCGAGAGGAAAGGT 376
Query 350 CAA-A-------C--C-AAGCAGGTGTTAAGTACTATAACGATCTCATAGATGGCCTCCT 398
|| | | | ||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 377 GAAGAGGGGAATCAACGAAGCAGGGGTTAAGTACTATAACGAGCTCATAGATGGCCTCCT 436
Query 399 AGCA-AAGAATATAACTCCTTTTGTTACCCTCTTCCATTGGGACCTTCCTCAAGTTCTGC 457
|| | ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 437 AG-AGAAGAATATAACTCCTTTCGTTACCCTCTTCCATTGGGACCTTCCTCAAGTTCTAC 495
Query 458 AAGATGAATATGAAGGTTTCTTGAACCATGAGATCAT 494
||||||| ||||||||||| ||| ||| || |||||
Sbjct 496 AAGATGAGTATGAAGGTTTTTTGCACCGCGATATCAT 532
> Ahg489446 jgi|Araly1|489446|fgenesh2_kg.6__2580__AT5G26000.1
Length=1731
Score = 248 bits (134), Expect = 7e-65
Identities = 279/347 (80%), Gaps = 18/347 (5%)
Strand=Plus/Plus
Query 622 GAACCTTATATCGTTGCACATAACCAGCTTCTTGCTCATGCCAAAGTC-GTCCATCTTTA 680
||||| ||| ||||||||||||||||||||||||||||||| | | | || || ||||
Sbjct 722 GAACCATATCTCGTTGCACATAACCAGCTTCTTGCTCATGC-AGCGGCCGTTGATGTTTA 780
Query 681 CCGGAAAAAATATAAGCCAAAACAAAG-AGG-ACAGATTGGAGTTGTGATGATTACTAGA 738
| ||| |||||||||| | || ||| ||| | |||||||| ||||||||| ||||||
Sbjct 781 CAGGACGAAATATAAGC-AGGACCAAGGAGGGA-AGATTGGACCTGTGATGATAACTAGA 838
Query 739 TGGTTTGTTCCATATGAT-AGCACTCAAGCCAACA-TAGATGCGACTGAGAGGAAC-AAA 795
|||||| ||||||||||| | ||||| | | | | || || |||||| || | |||
Sbjct 839 TGGTTTCTTCCATATGATGA-CACTCCTGAGAGTAAT-GAGGCAACTGAGCGGG-CTAAA 895
Query 796 GAATTCTTCT-TGGGATGGTTCATGGAGCCACTAACAAAAGGTAAATACCCTGATATCAT 854
||||| ||| ||| ||||||||||| ||| |||||| ||||||||||||| || |||||
Sbjct 896 GAATTTTTCCATGG-ATGGTTCATGGGGCCGCTAACAGAAGGTAAATACCCAGACATCAT 954
Query 855 GAGAAAACTTGTGGGTCGA-CGCCTTCCAAAGTTCAATAAGAA-AGAAGCCAAACTTGTA 912
||| ||||||| ||| || || |||||| |||||||| | || |||||| ||||||
Sbjct 955 GAGGGAACTTGTTGGT-GAGCGGCTTCCAGAGTTCAATGA-AACAGAAGCTGCCCTTGTA 1012
Query 913 AAGGGTTCATATGATTTTCTTGGTATCAACTACTACCAAACTCAGTA 959
|||||||||||||||||||||||| ||||||| ||| ||||||||
Sbjct 1013 AAGGGTTCATATGATTTTCTTGGTCTCAACTATTACGTCACTCAGTA 1059
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49369177515
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5