BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48380.1
Length=2756
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494891 jgi|Araly1|494891|fgenesh2_kg.8__707__AT5G48380.1 3517 0.0
Ahg357041 jgi|Araly1|357041|fgenesh1_pg.C_scaffold_8000828 695 0.0
> Ahg494891 jgi|Araly1|494891|fgenesh2_kg.8__707__AT5G48380.1
Length=2492
Score = 3517 bits (1904), Expect = 0.0
Identities = 2329/2526 (92%), Gaps = 62/2526 (2%)
Strand=Plus/Plus
Query 7 GTCATTGCGTTCTCATCATCAGTGTCTCTCTTTTCTTTGCCCCATTCTTCACGAACTTTC 66
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 3 GTCATTGCGTTCTCATCACCAGTGTCTCTCTTTTCTTTGCCCCATTCTTCACGAACTTTC 62
Query 67 ACTAGACGACGACGACGATCCAAAGTCCCAGTCAACTCACTCACAAAGACGACTCCTTTA 126
|| | |||||||||||||||||||||| |||||||||||||||| || ||||||||||||
Sbjct 63 ACAACACGACGACGACGATCCAAAGTCTCAGTCAACTCACTCACCAATACGACTCCTTTA 122
Query 127 TTAAATTATTCCCAACTCCTTTCTtcatcatcatcatcatcatcattcatAACCACTTAG 186
|||||||||| | || |||||||||| | ||||||| |||| | || |||||||
Sbjct 123 TTAAATTATTTCTAAGTCCTTTCTTC-T--TCATCAT--TCAT-A---AT---CACTTAG 170
Query 187 CCACAGATGCGA-----TT-TTCTTCTCCTTCTTCATTGTGCTCTTCAACACTTATGAAC 240
|||||||||||| || ||||||||||||||||||||| ||||||||||||||||||
Sbjct 171 CCACAGATGCGATTTTCTTCTTCTTCTCCTTCTTCATTGTGTTCTTCAACACTTATGAAC 230
Query 241 AAGAGCACCACCACCACGACAACGACGACTACAAAGACCAAAGCTTTCGTTTTGTGTTTC 300
|||||||||||||||||| ||||| | | ||||||||||||||||||||||| | ||
Sbjct 231 AAGAGCACCACCACCACG---ACGAC-A--ATAAAGACCAAAGCTTTCGTTTTGTATCTC 284
Query 301 TGATTTTGATTCGATTTTGATGCTCATCGAAGAGAACCCTTGATTTTGTTGCTGTAGTTC 360
|||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||||
Sbjct 285 TGATTTTGATTCGATTTTGATGTTCATCGGAGAGAACCCTTGATTTTGTTTCTGTAGTTT 344
Query 361 ATAGAGATTTTACACATTTTGTGGAATTTAGTGGATTTATGATGATGGGTAGGTTAGTTT 420
||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 345 ATAGAGA-TTTACCCATTTTGTGGAATTTAGGGGATTTATGATGATGGGTAGGTTAGTTT 403
Query 421 TTGTAATCTGGCTCTATAATTGTCTC---TGTTTGCTGCTACTCTCG-AGCTTGGTTGAC 476
| | ||| ||||| | ||||||||| |||||||||||||| | | | |||| | ||
Sbjct 404 TCGCAATTTGGCTGTGGAATTGTCTCTGTTGTTTGCTGCTACTGT-GTACCTTGATCGAT 462
Query 477 GCGGATCAGGCCAACATAGATTGCTTAAGGACCTTTAAATCTCAAGTAGAGGATCCAAAT 536
|| ||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 463 GCAAATCAGGCCAACGTAGATTGCTTGAGGACCTTTAAATCTCAAGTTGAGGATCCAAAT 522
Query 537 AGATATTTATCGACTTGGGTTTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGT 596
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 523 GGATATTTATCGAGTTGGGTTTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGT 582
Query 597 GGTGTGACTTGTTGGCATGATGATGAGAATAGGGTTTTGAGTATTAAGCTATCTGGTTAT 656
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 583 GGTGTGACTTGTTGGCATGATGATGAGAATAGGGTTTTGAGTATTAAGCTCTCTGGTTAT 642
Query 657 GGTCTTAGAGGAGTGTTTCCTCCTGCGG-TTAAGCTATGTGCTGATC-TCACTGGTTTAG 714
|||||||||||||||||||||| || || ||||| |||| |||| | | |||||| |||
Sbjct 643 GGTCTTAGAGGAGTGTTTCCTCTTG-GGATTAAGAAATGTTCTGA-CTTGACTGGTCTAG 700
Query 715 ATCTTTCTAGAAACAACTTCTCTGGACCTTTACCAGCCAA-CATTAGCACCT-TGATTCC 772
| ||||||||||||||||||||||||||||||||| |||| | ||| | | |||||||
Sbjct 701 AGCTTTCTAGAAACAACTTCTCTGGACCTTTACCATCCAATC-TTA-CTGATGTGATTCC 758
Query 773 ACTTGTTACGA-TTCTAGACCTCTCCTACAATAGCTTCTCTGGTGAAATCCCTATGTT-G 830
||||||||| | || | |||||||||| |||||| || |||||||||||||| |||| |
Sbjct 759 ACTTGTTACAACTT-TGGACCTCTCCTTCAATAGTTTTTCTGGTGAAATCCC--TGTTAG 815
Query 831 -ATCTCCAACATTACCTTTTTGAACACTCTTATGCTTCAGCATAACCAGTTCACGGGTAC 889
||||| |||||||||||||||||| |||||||||||||| |||||| |||| |||||||
Sbjct 816 TATCTCAAACATTACCTTTTTGAACTCTCTTATGCTTCAGAATAACCGGTTCTCGGGTAC 875
Query 890 TCTTCCTCCCCAGCTAGCGCAACTTGGACGGCTCAAAACATTCTCTGTGTCTGACAATCG 949
|||||||||| |||||| || ||||||||||||||||| ||||||||| || ||||||
Sbjct 876 TCTTCCTCCCGAGCTAGTGCTGCTTGGACGGCTCAAAACCTTCTCTGTGGCTAACAATCT 935
Query 950 TCTCGTTGGTCCTATCCCAAATTTCAACCAAACCTTGCAGTTT-AAGCAGGA-ATTGTTT 1007
|||||||||||||||||| |||||||||||||||||| | ||| || ||| | |||
Sbjct 936 TCTCGTTGGTCCTATCCCGAATTTCAACCAAACCTTGAAATTTGGGGC-GGAGA-ACTTT 993
Query 1008 GCTAATAA-CCTGGATCTGTGTGGTAAGCCTCTAGATGACTGTAAGAGTGCTTCTAGCTC 1066
| |||||| || |||| |||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 994 GATAATAACCCGGGAT-TGTGTGGTAAGCCTCTGGATGATTGTAAGAGTGCTTCTAGCTC 1052
Query 1067 TCGTGGTAAAGTTGTTATTATAGCGGCAGTTGGTGGACTGACTGCAGCAGCATTAGTCGT 1126
||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 1053 TCGTGGTAAAGTTGTTATTATAGCGGCAGTTGGTGGATTGACTGCGGCAGCATTAGTCGT 1112
Query 1127 TGGGGTTGTTTTGTTCTTCTATTTCCGTAAATTGGGTGCTGTTCGGAAGAAGCAGGATGA 1186
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1113 TGGGGTTGTTTTGTTCTTCTATTTCCGTAAATTGGGTGTTGTTCGGAAGAAGCAGGATGA 1172
Query 1187 TCCTGAAGGAAACAGATGGGCAAAGAGCTTGAAAGGACAGAAAGGTGTTAAGGTTTTCAT 1246
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1173 TCCTGAAGGAAACAGATGGGCAAAGAGCTTGAAAGGACAGAAAGGCGTCAAGGTTTTCAT 1232
Query 1247 GTTTAAGAAATCGGTTTCAAAGATGAAATTAAGCGATCTTATGAAGGCAACAGAGGAATT 1306
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1233 GTTTAAGAACTCGGTTTCAAAGATGAAATTAAGCGATCTTATGAAGGCAACAGAGGAATT 1292
Query 1307 CAAGAAAGATAATATCATTGCAACAGGAAGAACAGGAACTATGTACAAAGGTAGGCTTGA 1366
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1293 CAAGAAAGATAATATCATTGCAACAGGAAGAACAGGAACTATGTATAAAGGTAGGCTTGA 1352
Query 1367 AGACGGGTCTCTACTTATGATAAAGAGGTTGCAGGATTCTCAACGCTCTGAGAAAGAGTT 1426
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1353 AGACGGGACTCCGCTTATGATAAAGAGGTTGCAGGATTCTCAACGCTCTGAGAAAGAGTT 1412
Query 1427 TGATGCAGAGATGAAGACTTTGGGCTCTGTTAAAAACAGAAACTTAGTCCCTCTCTTGGG 1486
||| ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 1413 TGACGCAGAGATGAAGACTTTGGGCTCCGTAAAAAACAGAAACTTAGTCCCCCTCTTGGG 1472
Query 1487 CTATTGTGTTGCCAATAAGGAGAGGCTTCTAATGTATGAGTACATGGCAAACGGTTACCT 1546
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1473 CTATTGTGTTGCGAATAAGGAGAGGCTTCTAATGTACGAGTACATGGCAAACGGTTACCT 1532
Query 1547 TTATGATCAGTTACATCCTGCAGATGAAGAATCCTTCAAGCCCTTGGATTGGCCTTCAAG 1606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1533 TTATGATCAGTTACATCCTGCAGATGAAGAATCCTTCAAGCCCTTGGATTGGCCTTCAAG 1592
Query 1607 GCTGAAAATCGCGATTGGGACGGCAAAAGGATTGGCATGGCTTCATCATAGCTGCAACCC 1666
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1593 GCTGAAAATCGCGATTGGGACGGCAAAAGGATTGGCATGGCTTCACCACAGCTGCAACCC 1652
Query 1667 GAGAATCATCCATCGCAACATAAGCTCGAAATGCATATTGTTGACTGCAGAGTTTGAGCC 1726
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1653 GAGAATTATCCATCGCAACATAAGCTCGAAATGCATATTGTTGACTGCAGAATTCGAGCC 1712
Query 1727 AAAGATCTCGGATTTCGGTCTAGCTAGGCTGATGAACCCAATTGATACCCATTTAAGCAC 1786
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1713 CAAGATCTCGGATTTCGGTCTAGCTAGGCTGATGAACCCAATTGATACCCATCTAAGCAC 1772
Query 1787 ATTCGTCAATGGAGAATTTGGGGATTTCGGTTATGTTGCTCCCGAGTATTCAAGAACCAT 1846
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1773 ATTCGTCAATGGAGAATTTGGGGATTTCGGTTATGTTGCTCCCGAGTATTCAAGAACCAT 1832
Query 1847 GGTTGCAACTCCAAAAGGAGATGTCTACAGCTTCGGTGTTGTGCTTCTAGAGCTAGTAAC 1906
|||||||||||| ||||||||||| |||||||| || |||||||||||||||||||||||
Sbjct 1833 GGTTGCAACTCCGAAAGGAGATGTTTACAGCTTTGGGGTTGTGCTTCTAGAGCTAGTAAC 1892
Query 1907 GGGCCAAAAAGCAACGAGTGTAACAAAAGTATCTGAAGAAAAAGCTGAGGAAGAAAACTT 1966
|||||||||||||||||||| |||||||||||||||||| ||||||||||||| |||
Sbjct 1893 AGGCCAAAAAGCAACGAGTGTGACAAAAGTATCTGAAGAA---GCTGAGGAAGAAAGCTT 1949
Query 1967 CAAGGGTAACCTCGTGGAATGGATTACAAAGCTATCAAGTGAATCAAAACTGCAGGAAGC 2026
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1950 CAAGGGTAACCTTGTGGAATGGATTACAAAGCTATCAAGTGAATCAAAACTGCAAGAAGC 2009
Query 2027 AATCGACAGGTCCTTACTTGGGAACGGTGTGGATGATGAAATCTTCAAAGTACTCAAAGT 2086
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2010 AATCGACAGGTCCTTACTCGGGAACGGTGTGGATGATGAGATCTTCAAAGTGCTCAAAGT 2069
Query 2087 AGCATGCAACTGCGTTCTACCGGAAATAGCAAAGCAGAGGCCAACCATGTTTGAAGTTTA 2146
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2070 AGCATGCAACTGTGTTCTACCGGAAATAGCAAAGCAGAGGCCAACCATGTTTGAAGTCTA 2129
Query 2147 TCAGCTTCTAAGAGCCATTGGAGAGAGCTACAACTTCACCGCCGATGATGATATCTTAAT 2206
|||||| || |||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 2130 TCAGCTCCTTAGAGCCATTGGAGAGAGCTACAACTTCACCGCTGACGATGATATCTTAAT 2189
Query 2207 CCCATCTGAATCAGGTGAAGGCGATTTCATTGAAGAGCTCATAGTTGCTCGTTGATCAAG 2266
||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 2190 CCCCTCTGAATCAGGTGAAGGCGATTTCATCGAAGAGCTCATAGTTGCTCGCTGATCAAA 2249
Query 2267 AGGAAGGGTAAGAATTGTGAAACAAACATCTCTAGTCGTAGCAGTCCAAAGATATATATA 2326
|||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2250 AGGAAGGGTAGGACTTGTGAAACAAACATCTCTAGTCGTAGCAGTCCAAAGATATATAT- 2308
Query 2327 ATGTATAAGTATTGtttttattttatttttGGGTTCTCGTCGTCGATGGTGTGTTGTAAT 2386
||||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||
Sbjct 2309 --GTATAAGTATTGTTTTTTTTTTTTTTTTGGGTTCCCGTCGTCGATGGTGTGTTGTAAT 2366
Query 2387 ATGATATATTGTTAGATGCACTCTCT-T-ATTACTATGTACTAAGCTTTGGGTGTGTGGT 2444
|||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| ||
Sbjct 2367 ATGATATATTGTTAGATGCACTCTCTCTTATTACTATGTACTGAGCTTTGGGTGTGTAGT 2426
Query 2445 ACAGTCACTGTTTTGGTTTTGCCACTACGTCTTTGCTGCCTTATA---TTTT-GCAGCAC 2500
|||||||||| ||||||||||||||| |||||||||||| || || |||| ||||||
Sbjct 2427 ACAGTCACTGGTTTGGTTTTGCCACTGCGTCTTTGCTGCTTTTTAAAATTTTTGCAGCAA 2486
Query 2501 TAATTT 2506
||||||
Sbjct 2487 TAATTT 2492
> Ahg357041 jgi|Araly1|357041|fgenesh1_pg.C_scaffold_8000828
Length=837
Score = 695 bits (376), Expect = 0.0
Identities = 609/716 (85%), Gaps = 37/716 (5%)
Strand=Plus/Plus
Query 438 AATTGTCTCTGTTTGCTGCTACTCTCG-AGCTTGGTTGACGCGGATCAGGCCAACATAGA 496
||||||||||||||||||||||| | | | |||| | || || ||||||||||| ||||
Sbjct 91 AATTGTCTCTGTTTGCTGCTACTGT-GTACCTTGATCGATGCAAATCAGGCCAACGTAGA 149
Query 497 TTGCTTAAGGACCTTTAAATCTCAAGTAGAGGATCCAAATAGATATTTATCGACTTGGGT 556
|||||| ||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 150 TTGCTTGAGGACCTTTAAATCTCAAGTAGAGGATCCAAATAGCTATTTATCGAGTTGGGT 209
Query 557 TTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGTGGTGTGACTTGTTGGCATGA 616
||||||||||||| || |||||||||||| ||||| |||||||||||||||||||||||
Sbjct 210 TTTTGGCAACGAGGCTTATGGTTATATCTGTAAGTTTAGTGGTGTGACTTGTTGGCATGA 269
Query 617 TGATGAGAATAGGGTTTTGAGTATTAAGCTATCTGGTTATGGTCTTAGAGGAGTGTTTCC 676
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 270 TGATGAGAATAGGGTTTTGAGTATTAAGCTCTCTGGTTATGGTCTTAGAGGAGTGTTTCC 329
Query 677 TCCTGCGG-TTAAGCTATGTGCTGATCTCACT-GGTTTAGATCTTTCTAGAAACAACTTC 734
|| || || |||||| |||| ||||| | | ||||||||| |||||||||||||||||
Sbjct 330 TCTTG-GGATTAAGCAATGTTCTGATTTGG-TAGGTTTAGATATTTCTAGAAACAACTTC 387
Query 735 TCTGGACCTTTACCAGCCAACATTAGCACCT-TGATTCCACTTGTTACGA-TTCTAGACC 792
||||||||||||||| | ||| ||| || | |||||||||||||||| | || | ||||
Sbjct 388 TCTGGACCTTTACCATCGAACCTTA-CAGATGTGATTCCACTTGTTACAACTT-TGGACC 445
Query 793 TCTCCTACAATAGCTTCTCTGGTGAAATCCCTATGTTGATCTC-CAA-CATTACCTTTTT 850
|||||| |||||| ||| |||||| ||||||| || || || ||| ||||||||||||
Sbjct 446 TCTCCTTCAATAGTTTCACTGGTGGAATCCCT--GTCAATATCGCAAACATTACCTTTTT 503
Query 851 GAACACTCTTATGCTTCAGCATAACCAGTTCACGGGT-ACTCTTCCTCCCCAGCTAGCGC 909
|||| |||||||||||||| |||||| |||||| ||| | || |||||| |||||| |
Sbjct 504 GAACTCTCTTATGCTTCAGAATAACCGGTTCACTGGTCAG-CTACCTCCCGAGCTAGTGA 562
Query 910 AACTTGGACGGCTCAAAACATTCTCTGTGTCTGACAATCGTCTCGTT-GGTCCTATCCCA 968
||||||||||||||||||| ||||||||| || ||||||||||| | ||||||||||||
Sbjct 563 AACTTGGACGGCTCAAAACGTTCTCTGTGGCTAACAATCGTCTC-TCAGGTCCTATCCCA 621
Query 969 AATTTCAACCAA--ACCTTGCAGTTTAAG-CAG-GAATTGTTTGCTAATAAC-CTGGATC 1023
| ||||| || ||| ||| || || ||| ||||| || ||||||||| | || |
Sbjct 622 ACGTTCAA--AAGCACCA-GCA-TT-AACTCAGAGAATT-TT-GCTAATAACACGGGTT- 673
Query 1024 TGTGTGGTAAGCCTCTAGATGACTGTAAGAGTGCTTCTAGCTCTCGTGGTAAAGTTGTTA 1083
|||||||||||||||| ||||| ||||||| ||||||||| | | |||||||||||
Sbjct 674 TGTGTGGTAAGCCTCTGGATGAATGTAAGACTGCTTCTAGA----G-G-TAAAGTTGTTA 727
Query 1084 TTATAGCGGCAGTTGGTGGACTGACTGCAGCAGCATTAGTCGTTGGGGTTGTTTTG 1139
||||||||||| | |||||| | |||| |||||||| ||||||||| || |||||
Sbjct 728 TTATAGCGGCACTAGGTGGATTTACTGTGGCAGCATTTGTCGTTGGGATTATTTTG 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103986368850
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5