BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48380.1 Length=2756 Score E Sequences producing significant alignments: (Bits) Value Ahg494891 jgi|Araly1|494891|fgenesh2_kg.8__707__AT5G48380.1 3517 0.0 Ahg357041 jgi|Araly1|357041|fgenesh1_pg.C_scaffold_8000828 695 0.0 > Ahg494891 jgi|Araly1|494891|fgenesh2_kg.8__707__AT5G48380.1 Length=2492 Score = 3517 bits (1904), Expect = 0.0 Identities = 2329/2526 (92%), Gaps = 62/2526 (2%) Strand=Plus/Plus Query 7 GTCATTGCGTTCTCATCATCAGTGTCTCTCTTTTCTTTGCCCCATTCTTCACGAACTTTC 66 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 3 GTCATTGCGTTCTCATCACCAGTGTCTCTCTTTTCTTTGCCCCATTCTTCACGAACTTTC 62 Query 67 ACTAGACGACGACGACGATCCAAAGTCCCAGTCAACTCACTCACAAAGACGACTCCTTTA 126 || | |||||||||||||||||||||| |||||||||||||||| || |||||||||||| Sbjct 63 ACAACACGACGACGACGATCCAAAGTCTCAGTCAACTCACTCACCAATACGACTCCTTTA 122 Query 127 TTAAATTATTCCCAACTCCTTTCTtcatcatcatcatcatcatcattcatAACCACTTAG 186 |||||||||| | || |||||||||| | ||||||| |||| | || ||||||| Sbjct 123 TTAAATTATTTCTAAGTCCTTTCTTC-T--TCATCAT--TCAT-A---AT---CACTTAG 170 Query 187 CCACAGATGCGA-----TT-TTCTTCTCCTTCTTCATTGTGCTCTTCAACACTTATGAAC 240 |||||||||||| || ||||||||||||||||||||| |||||||||||||||||| Sbjct 171 CCACAGATGCGATTTTCTTCTTCTTCTCCTTCTTCATTGTGTTCTTCAACACTTATGAAC 230 Query 241 AAGAGCACCACCACCACGACAACGACGACTACAAAGACCAAAGCTTTCGTTTTGTGTTTC 300 |||||||||||||||||| ||||| | | ||||||||||||||||||||||| | || Sbjct 231 AAGAGCACCACCACCACG---ACGAC-A--ATAAAGACCAAAGCTTTCGTTTTGTATCTC 284 Query 301 TGATTTTGATTCGATTTTGATGCTCATCGAAGAGAACCCTTGATTTTGTTGCTGTAGTTC 360 |||||||||||||||||||||| |||||| |||||||||||||||||||| |||||||| Sbjct 285 TGATTTTGATTCGATTTTGATGTTCATCGGAGAGAACCCTTGATTTTGTTTCTGTAGTTT 344 Query 361 ATAGAGATTTTACACATTTTGTGGAATTTAGTGGATTTATGATGATGGGTAGGTTAGTTT 420 ||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 345 ATAGAGA-TTTACCCATTTTGTGGAATTTAGGGGATTTATGATGATGGGTAGGTTAGTTT 403 Query 421 TTGTAATCTGGCTCTATAATTGTCTC---TGTTTGCTGCTACTCTCG-AGCTTGGTTGAC 476 | | ||| ||||| | ||||||||| |||||||||||||| | | | |||| | || Sbjct 404 TCGCAATTTGGCTGTGGAATTGTCTCTGTTGTTTGCTGCTACTGT-GTACCTTGATCGAT 462 Query 477 GCGGATCAGGCCAACATAGATTGCTTAAGGACCTTTAAATCTCAAGTAGAGGATCCAAAT 536 || ||||||||||| |||||||||| |||||||||||||||||||| |||||||||||| Sbjct 463 GCAAATCAGGCCAACGTAGATTGCTTGAGGACCTTTAAATCTCAAGTTGAGGATCCAAAT 522 Query 537 AGATATTTATCGACTTGGGTTTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGT 596 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 523 GGATATTTATCGAGTTGGGTTTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGT 582 Query 597 GGTGTGACTTGTTGGCATGATGATGAGAATAGGGTTTTGAGTATTAAGCTATCTGGTTAT 656 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 583 GGTGTGACTTGTTGGCATGATGATGAGAATAGGGTTTTGAGTATTAAGCTCTCTGGTTAT 642 Query 657 GGTCTTAGAGGAGTGTTTCCTCCTGCGG-TTAAGCTATGTGCTGATC-TCACTGGTTTAG 714 |||||||||||||||||||||| || || ||||| |||| |||| | | |||||| ||| Sbjct 643 GGTCTTAGAGGAGTGTTTCCTCTTG-GGATTAAGAAATGTTCTGA-CTTGACTGGTCTAG 700 Query 715 ATCTTTCTAGAAACAACTTCTCTGGACCTTTACCAGCCAA-CATTAGCACCT-TGATTCC 772 | ||||||||||||||||||||||||||||||||| |||| | ||| | | ||||||| Sbjct 701 AGCTTTCTAGAAACAACTTCTCTGGACCTTTACCATCCAATC-TTA-CTGATGTGATTCC 758 Query 773 ACTTGTTACGA-TTCTAGACCTCTCCTACAATAGCTTCTCTGGTGAAATCCCTATGTT-G 830 ||||||||| | || | |||||||||| |||||| || |||||||||||||| |||| | Sbjct 759 ACTTGTTACAACTT-TGGACCTCTCCTTCAATAGTTTTTCTGGTGAAATCCC--TGTTAG 815 Query 831 -ATCTCCAACATTACCTTTTTGAACACTCTTATGCTTCAGCATAACCAGTTCACGGGTAC 889 ||||| |||||||||||||||||| |||||||||||||| |||||| |||| ||||||| Sbjct 816 TATCTCAAACATTACCTTTTTGAACTCTCTTATGCTTCAGAATAACCGGTTCTCGGGTAC 875 Query 890 TCTTCCTCCCCAGCTAGCGCAACTTGGACGGCTCAAAACATTCTCTGTGTCTGACAATCG 949 |||||||||| |||||| || ||||||||||||||||| ||||||||| || |||||| Sbjct 876 TCTTCCTCCCGAGCTAGTGCTGCTTGGACGGCTCAAAACCTTCTCTGTGGCTAACAATCT 935 Query 950 TCTCGTTGGTCCTATCCCAAATTTCAACCAAACCTTGCAGTTT-AAGCAGGA-ATTGTTT 1007 |||||||||||||||||| |||||||||||||||||| | ||| || ||| | ||| Sbjct 936 TCTCGTTGGTCCTATCCCGAATTTCAACCAAACCTTGAAATTTGGGGC-GGAGA-ACTTT 993 Query 1008 GCTAATAA-CCTGGATCTGTGTGGTAAGCCTCTAGATGACTGTAAGAGTGCTTCTAGCTC 1066 | |||||| || |||| |||||||||||||||| ||||| |||||||||||||||||||| Sbjct 994 GATAATAACCCGGGAT-TGTGTGGTAAGCCTCTGGATGATTGTAAGAGTGCTTCTAGCTC 1052 Query 1067 TCGTGGTAAAGTTGTTATTATAGCGGCAGTTGGTGGACTGACTGCAGCAGCATTAGTCGT 1126 ||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 1053 TCGTGGTAAAGTTGTTATTATAGCGGCAGTTGGTGGATTGACTGCGGCAGCATTAGTCGT 1112 Query 1127 TGGGGTTGTTTTGTTCTTCTATTTCCGTAAATTGGGTGCTGTTCGGAAGAAGCAGGATGA 1186 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1113 TGGGGTTGTTTTGTTCTTCTATTTCCGTAAATTGGGTGTTGTTCGGAAGAAGCAGGATGA 1172 Query 1187 TCCTGAAGGAAACAGATGGGCAAAGAGCTTGAAAGGACAGAAAGGTGTTAAGGTTTTCAT 1246 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1173 TCCTGAAGGAAACAGATGGGCAAAGAGCTTGAAAGGACAGAAAGGCGTCAAGGTTTTCAT 1232 Query 1247 GTTTAAGAAATCGGTTTCAAAGATGAAATTAAGCGATCTTATGAAGGCAACAGAGGAATT 1306 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1233 GTTTAAGAACTCGGTTTCAAAGATGAAATTAAGCGATCTTATGAAGGCAACAGAGGAATT 1292 Query 1307 CAAGAAAGATAATATCATTGCAACAGGAAGAACAGGAACTATGTACAAAGGTAGGCTTGA 1366 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1293 CAAGAAAGATAATATCATTGCAACAGGAAGAACAGGAACTATGTATAAAGGTAGGCTTGA 1352 Query 1367 AGACGGGTCTCTACTTATGATAAAGAGGTTGCAGGATTCTCAACGCTCTGAGAAAGAGTT 1426 ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1353 AGACGGGACTCCGCTTATGATAAAGAGGTTGCAGGATTCTCAACGCTCTGAGAAAGAGTT 1412 Query 1427 TGATGCAGAGATGAAGACTTTGGGCTCTGTTAAAAACAGAAACTTAGTCCCTCTCTTGGG 1486 ||| ||||||||||||||||||||||| || |||||||||||||||||||| |||||||| Sbjct 1413 TGACGCAGAGATGAAGACTTTGGGCTCCGTAAAAAACAGAAACTTAGTCCCCCTCTTGGG 1472 Query 1487 CTATTGTGTTGCCAATAAGGAGAGGCTTCTAATGTATGAGTACATGGCAAACGGTTACCT 1546 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1473 CTATTGTGTTGCGAATAAGGAGAGGCTTCTAATGTACGAGTACATGGCAAACGGTTACCT 1532 Query 1547 TTATGATCAGTTACATCCTGCAGATGAAGAATCCTTCAAGCCCTTGGATTGGCCTTCAAG 1606 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1533 TTATGATCAGTTACATCCTGCAGATGAAGAATCCTTCAAGCCCTTGGATTGGCCTTCAAG 1592 Query 1607 GCTGAAAATCGCGATTGGGACGGCAAAAGGATTGGCATGGCTTCATCATAGCTGCAACCC 1666 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1593 GCTGAAAATCGCGATTGGGACGGCAAAAGGATTGGCATGGCTTCACCACAGCTGCAACCC 1652 Query 1667 GAGAATCATCCATCGCAACATAAGCTCGAAATGCATATTGTTGACTGCAGAGTTTGAGCC 1726 |||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||| Sbjct 1653 GAGAATTATCCATCGCAACATAAGCTCGAAATGCATATTGTTGACTGCAGAATTCGAGCC 1712 Query 1727 AAAGATCTCGGATTTCGGTCTAGCTAGGCTGATGAACCCAATTGATACCCATTTAAGCAC 1786 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1713 CAAGATCTCGGATTTCGGTCTAGCTAGGCTGATGAACCCAATTGATACCCATCTAAGCAC 1772 Query 1787 ATTCGTCAATGGAGAATTTGGGGATTTCGGTTATGTTGCTCCCGAGTATTCAAGAACCAT 1846 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1773 ATTCGTCAATGGAGAATTTGGGGATTTCGGTTATGTTGCTCCCGAGTATTCAAGAACCAT 1832 Query 1847 GGTTGCAACTCCAAAAGGAGATGTCTACAGCTTCGGTGTTGTGCTTCTAGAGCTAGTAAC 1906 |||||||||||| ||||||||||| |||||||| || ||||||||||||||||||||||| Sbjct 1833 GGTTGCAACTCCGAAAGGAGATGTTTACAGCTTTGGGGTTGTGCTTCTAGAGCTAGTAAC 1892 Query 1907 GGGCCAAAAAGCAACGAGTGTAACAAAAGTATCTGAAGAAAAAGCTGAGGAAGAAAACTT 1966 |||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||| Sbjct 1893 AGGCCAAAAAGCAACGAGTGTGACAAAAGTATCTGAAGAA---GCTGAGGAAGAAAGCTT 1949 Query 1967 CAAGGGTAACCTCGTGGAATGGATTACAAAGCTATCAAGTGAATCAAAACTGCAGGAAGC 2026 |||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1950 CAAGGGTAACCTTGTGGAATGGATTACAAAGCTATCAAGTGAATCAAAACTGCAAGAAGC 2009 Query 2027 AATCGACAGGTCCTTACTTGGGAACGGTGTGGATGATGAAATCTTCAAAGTACTCAAAGT 2086 |||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| Sbjct 2010 AATCGACAGGTCCTTACTCGGGAACGGTGTGGATGATGAGATCTTCAAAGTGCTCAAAGT 2069 Query 2087 AGCATGCAACTGCGTTCTACCGGAAATAGCAAAGCAGAGGCCAACCATGTTTGAAGTTTA 2146 |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 2070 AGCATGCAACTGTGTTCTACCGGAAATAGCAAAGCAGAGGCCAACCATGTTTGAAGTCTA 2129 Query 2147 TCAGCTTCTAAGAGCCATTGGAGAGAGCTACAACTTCACCGCCGATGATGATATCTTAAT 2206 |||||| || |||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 2130 TCAGCTCCTTAGAGCCATTGGAGAGAGCTACAACTTCACCGCTGACGATGATATCTTAAT 2189 Query 2207 CCCATCTGAATCAGGTGAAGGCGATTTCATTGAAGAGCTCATAGTTGCTCGTTGATCAAG 2266 ||| |||||||||||||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 2190 CCCCTCTGAATCAGGTGAAGGCGATTTCATCGAAGAGCTCATAGTTGCTCGCTGATCAAA 2249 Query 2267 AGGAAGGGTAAGAATTGTGAAACAAACATCTCTAGTCGTAGCAGTCCAAAGATATATATA 2326 |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2250 AGGAAGGGTAGGACTTGTGAAACAAACATCTCTAGTCGTAGCAGTCCAAAGATATATAT- 2308 Query 2327 ATGTATAAGTATTGtttttattttatttttGGGTTCTCGTCGTCGATGGTGTGTTGTAAT 2386 ||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||| Sbjct 2309 --GTATAAGTATTGTTTTTTTTTTTTTTTTGGGTTCCCGTCGTCGATGGTGTGTTGTAAT 2366 Query 2387 ATGATATATTGTTAGATGCACTCTCT-T-ATTACTATGTACTAAGCTTTGGGTGTGTGGT 2444 |||||||||||||||||||||||||| | ||||||||||||| |||||||||||||| || Sbjct 2367 ATGATATATTGTTAGATGCACTCTCTCTTATTACTATGTACTGAGCTTTGGGTGTGTAGT 2426 Query 2445 ACAGTCACTGTTTTGGTTTTGCCACTACGTCTTTGCTGCCTTATA---TTTT-GCAGCAC 2500 |||||||||| ||||||||||||||| |||||||||||| || || |||| |||||| Sbjct 2427 ACAGTCACTGGTTTGGTTTTGCCACTGCGTCTTTGCTGCTTTTTAAAATTTTTGCAGCAA 2486 Query 2501 TAATTT 2506 |||||| Sbjct 2487 TAATTT 2492 > Ahg357041 jgi|Araly1|357041|fgenesh1_pg.C_scaffold_8000828 Length=837 Score = 695 bits (376), Expect = 0.0 Identities = 609/716 (85%), Gaps = 37/716 (5%) Strand=Plus/Plus Query 438 AATTGTCTCTGTTTGCTGCTACTCTCG-AGCTTGGTTGACGCGGATCAGGCCAACATAGA 496 ||||||||||||||||||||||| | | | |||| | || || ||||||||||| |||| Sbjct 91 AATTGTCTCTGTTTGCTGCTACTGT-GTACCTTGATCGATGCAAATCAGGCCAACGTAGA 149 Query 497 TTGCTTAAGGACCTTTAAATCTCAAGTAGAGGATCCAAATAGATATTTATCGACTTGGGT 556 |||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||| Sbjct 150 TTGCTTGAGGACCTTTAAATCTCAAGTAGAGGATCCAAATAGCTATTTATCGAGTTGGGT 209 Query 557 TTTTGGCAACGAGACTGCTGGTTATATCTGCAAGTTCAGTGGTGTGACTTGTTGGCATGA 616 ||||||||||||| || |||||||||||| ||||| ||||||||||||||||||||||| Sbjct 210 TTTTGGCAACGAGGCTTATGGTTATATCTGTAAGTTTAGTGGTGTGACTTGTTGGCATGA 269 Query 617 TGATGAGAATAGGGTTTTGAGTATTAAGCTATCTGGTTATGGTCTTAGAGGAGTGTTTCC 676 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 270 TGATGAGAATAGGGTTTTGAGTATTAAGCTCTCTGGTTATGGTCTTAGAGGAGTGTTTCC 329 Query 677 TCCTGCGG-TTAAGCTATGTGCTGATCTCACT-GGTTTAGATCTTTCTAGAAACAACTTC 734 || || || |||||| |||| ||||| | | ||||||||| ||||||||||||||||| Sbjct 330 TCTTG-GGATTAAGCAATGTTCTGATTTGG-TAGGTTTAGATATTTCTAGAAACAACTTC 387 Query 735 TCTGGACCTTTACCAGCCAACATTAGCACCT-TGATTCCACTTGTTACGA-TTCTAGACC 792 ||||||||||||||| | ||| ||| || | |||||||||||||||| | || | |||| Sbjct 388 TCTGGACCTTTACCATCGAACCTTA-CAGATGTGATTCCACTTGTTACAACTT-TGGACC 445 Query 793 TCTCCTACAATAGCTTCTCTGGTGAAATCCCTATGTTGATCTC-CAA-CATTACCTTTTT 850 |||||| |||||| ||| |||||| ||||||| || || || ||| |||||||||||| Sbjct 446 TCTCCTTCAATAGTTTCACTGGTGGAATCCCT--GTCAATATCGCAAACATTACCTTTTT 503 Query 851 GAACACTCTTATGCTTCAGCATAACCAGTTCACGGGT-ACTCTTCCTCCCCAGCTAGCGC 909 |||| |||||||||||||| |||||| |||||| ||| | || |||||| |||||| | Sbjct 504 GAACTCTCTTATGCTTCAGAATAACCGGTTCACTGGTCAG-CTACCTCCCGAGCTAGTGA 562 Query 910 AACTTGGACGGCTCAAAACATTCTCTGTGTCTGACAATCGTCTCGTT-GGTCCTATCCCA 968 ||||||||||||||||||| ||||||||| || ||||||||||| | |||||||||||| Sbjct 563 AACTTGGACGGCTCAAAACGTTCTCTGTGGCTAACAATCGTCTC-TCAGGTCCTATCCCA 621 Query 969 AATTTCAACCAA--ACCTTGCAGTTTAAG-CAG-GAATTGTTTGCTAATAAC-CTGGATC 1023 | ||||| || ||| ||| || || ||| ||||| || ||||||||| | || | Sbjct 622 ACGTTCAA--AAGCACCA-GCA-TT-AACTCAGAGAATT-TT-GCTAATAACACGGGTT- 673 Query 1024 TGTGTGGTAAGCCTCTAGATGACTGTAAGAGTGCTTCTAGCTCTCGTGGTAAAGTTGTTA 1083 |||||||||||||||| ||||| ||||||| ||||||||| | | ||||||||||| Sbjct 674 TGTGTGGTAAGCCTCTGGATGAATGTAAGACTGCTTCTAGA----G-G-TAAAGTTGTTA 727 Query 1084 TTATAGCGGCAGTTGGTGGACTGACTGCAGCAGCATTAGTCGTTGGGGTTGTTTTG 1139 ||||||||||| | |||||| | |||| |||||||| ||||||||| || ||||| Sbjct 728 TTATAGCGGCACTAGGTGGATTTACTGTGGCAGCATTTGTCGTTGGGATTATTTTG 783 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103986368850 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5