BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48390.1 Length=2847 Score E Sequences producing significant alignments: (Bits) Value Ahg331248 jgi|Araly1|331248|fgenesh1_pm.C_scaffold_8000591 2206 0.0 Ahg931132 jgi|Araly1|931132|scaffold_303589.1 215 2e-54 > Ahg331248 jgi|Araly1|331248|fgenesh1_pm.C_scaffold_8000591 Length=4005 Score = 2206 bits (1194), Expect = 0.0 Identities = 1315/1375 (96%), Gaps = 2/1375 (0%) Strand=Plus/Plus Query 179 AGACAATTCCTAACTCGGCTGAGTCAACTTGCTCCTTTTCCCGATAACTCCTTCAAGCTT 238 ||||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 1471 AGACAATCCCTAACTCGACTGAGTCAACTCGCTCCTTTTCCCGATAACTCCTTCAAGCTC 1530 Query 239 ACCATATGGAAACTCAGCTTTCGCCTCTGGAATGCTTGTGTTGATCTCGCTAACGCCGCC 298 ||||||||||| || ||||||||||||||||| ||||||||||||||| ||||||||||| Sbjct 1531 ACCATATGGAAGCTTAGCTTTCGCCTCTGGAACGCTTGTGTTGATCTCTCTAACGCCGCC 1590 Query 299 TCTCTCCAATCCTCTTTAACCTCCGCCGAGAACATTGCGAATCTCAGACATGTTGCCGCC 358 ||||| |||||||||| ||||||||| |||| ||| ||||||||||| |||||||||||| Sbjct 1591 TCTCTACAATCCTCTTCAACCTCCGCTGAGAGCATCGCGAATCTCAGGCATGTTGCCGCC 1650 Query 359 GATATGCTTTTTCTCGCTAAGGACGTTACCGGTGTTCCATCTCCGACGATTAAGTCCTCT 418 |||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| ||| Sbjct 1651 GATATGCTATTTCTCGCTAAGGATGTTACCGGAGTTCCATCTCCGACGATTAAGTCTTCT 1710 Query 419 CTATTCTACTATAAGACCGGTCTTGTTTATCACAGTCTCAAGAAATTCGATCTCGCCTCC 478 || |||||||||| ||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 1711 CTCTTCTACTATAGGACCGGTCTCGTTTATCACAGTCTCAAGAAATTTGATCTCGCCTCC 1770 Query 479 GATTGCTTCGAGAGAGCCACCGAAATCGTCTCGAAAATTGATATCGCGAAAATTTCCGAT 538 | |||||| |||||||| ||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1771 GGTTGCTTTGAGAGAGCAACCGAAATCGTTTCGAAAATCGATATCGCGAAAATTTCCGAT 1830 Query 539 GCCGGAGAAAAGAAATTGTTTCTGGATCTAAACCTAGCTAGATCTCGAACTGCCTGGGAA 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1831 GCCGGAGAAAAGAAATTGTTTCTGGATCTAAACCTAGCTAGATCTCGAACTGCCTGGGAA 1890 Query 599 ATTTCTGATAGGAATTTAGCTGTAACGTTGCTTAATCGGGCGAAGAATTTGTTGTTTGGT 658 |||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| Sbjct 1891 ATTTCTGATAGGAATTTAGCTGTAACGTTGCTCAATCGAGCGAAGAATATGTTGTTTGGT 1950 Query 659 TCACCGGATCACTACAAATCGCTCTCAAATCAATTCCTTGCGTTTGGTAAAAGCTCTTTG 718 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1951 TCACCGGATCATTACAAATCGCTCTCAAATCAATTCCTTGCGTTTGGTAAAAGCTCTTTG 2010 Query 719 TCTAGAGGTGACGACGATTGCAGTCTAAACGACGCTCTTAGGTTAATGAATGAAGCGTTG 778 ||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||| ||| Sbjct 2011 TCTAGAGATGACGACGATTGCAGTCTAAACGATGCTCTTAGGCTCATGAATGAAGCATTG 2070 Query 779 GATCTTTGTGAGAAGGGATTAGGTACAGCAAAAACTCGGGAAGATACTACGGAGTTCACG 838 |||||||||||||||||||||||||| |||||||||||||||||||| | |||||||||| Sbjct 2071 GATCTTTGTGAGAAGGGATTAGGTACTGCAAAAACTCGGGAAGATACCATGGAGTTCACG 2130 Query 839 GCCATGAGAATCAAAACTCTGCGTTTCATATCAGCAGTGCATTTGCAGAAGGGAGAGTTC 898 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2131 GGGATGAGAATCAAAACTCTGCGTTTCATATCAGCAGTGCATTTGCAGAAGGGAGAGTTC 2190 Query 899 GAGAATGTGATAAAATGTGTGAAAGTTCTAAGGAATGGAGGAAATGGTAGTGATGGAGCT 958 ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2191 GAGAATGTGATCAAATGTGTGAAAGTTCTCAGGAATGGAGGAAATGGTAGTGATGGAGCA 2250 Query 959 GATCAACATGCTTCATTACCTGTGTTGGCGATGAAGGCTTGGTTAGGACTTGGGAGGCAT 1018 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 2251 GATCAACATGCTTCATTACCTGTGTTGGCGATGAAGGCTTGGTTAGGGCTTGGGAGACAT 2310 Query 1019 AGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTGGGAAACAATGATATTCCAGAGGCAGTG 1078 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 2311 AGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTGGGAAACAATGATATTCCAGAGGCTGTG 2370 Query 1079 TGGGTATCTGCTGTGGAAGCATATTTTGAGGTGGTTGGG-ACTGCTGGAGCAGAAACTGC 1137 |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| Sbjct 2371 TGGGTATCTGCTGTGGAAGCATATTTTGAGGTGG-TGGGAACTGCTGGAGCAGAAACTGC 2429 Query 1138 AAAGGGTGTGTTCTTAGGTCTGCTGGGAAGGTGTCATGTCAGTGCAAAGGCGGCACTTAG 1197 ||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 2430 AAAGGGTGTGTTCTTAGGTTTGCTGGGAAGGTGTCATGTTAGTGCAAAGGCGGCGCTTAG 2489 Query 1198 AGTGGCTCATCGGGTGCTTGGTGAGAGTAGGGGAGGTGATAATGGTTCGAGAATTAGGGC 1257 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2490 AGTGGCTCATCGGGTGCTTGGTGAGAGTAGGGGAGGTGATAATGGTTCGAGAATTAGGGC 2549 Query 1258 GAACGTTGTGGCTCAGCTCGTGTCAGATGAGAGAGTTGTTGCTCTCTTTGCTAGTGAAGC 1317 || ||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||| Sbjct 2550 AAATGTTGTGGCTCAGCTCGTATCAGACGAGAGAGTTGTTGCTCTCTTTGCTGGTGAAGC 2609 Query 1318 TGTGACTAAGGAGAGGAAGGCAATACATTCTGTTCTCTGGAACAGTGCTTCAGATCATTT 1377 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2610 AGTGACCAAGGAGAGGAAGGCAATACATTCTGTTCTCTGGAACAGTGCTTCAGATCATTT 2669 Query 1378 CCGTGCTAAAGATTATGAGACAAGTGCAGAGATGTTTGAGAAATCAATGCTCTATATTCC 1437 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 2670 CCGTGCTAAAGATTATGAGACAAGTGCAGAGATGTTTGAGAAGTCAATGCTCTATATTCC 2729 Query 1438 ACATGATATAGAAAATAGAGTTTTCAGGGCCAAAGGCTTCAGGGTTTTGTGTCTTTGCTA 1497 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2730 ACATGATATAGAAAATAGAGTTTTCAGGGCCAAAGGCTTCAGGGTTTTGTGTCTTTGCTA 2789 Query 1498 CCTTGGGCTCTCTCAGCTGGATCGAGCTCTTGAATACATAGAAGAAGCTGAAAAG 1552 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2790 CCTTGGGCTCTCTCAGCTGGATCGAGCTCTTGAATACATAGAAGAAGCTGAAAAG 2844 Score = 1733 bits (938), Expect = 0.0 Identities = 1078/1143 (94%), Gaps = 20/1143 (2%) Strand=Plus/Plus Query 1689 CGCATGAAGCTATTTCTTGCCAAGCGCTTCCAGTTGCTGTTGCTTCTCTTTCCAAGTTTC 1748 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2879 CGCATGAAGCTATTTCTTGCCAAGCGCTTCCAGTTGCTGTTGCTTCTCTTTCCAAGTTTC 2938 Query 1749 TCAGTTTCTATATCTCAGGaaaaaaaaTGCCAACCACAGAGGTTGTGGTCTTCCGTACCT 1808 |||||||||||||||| ||||||| |||||||||||||||||| |||||||| ||||||| Sbjct 2939 TCAGTTTCTATATCTCTGGAAAAACAATGCCAACCACAGAGGTCGTGGTCTTTCGTACCT 2998 Query 1809 TAGTCACTATATTGACTCAAGACATTGGCAGCGAAACCGAAGCTCTTAACTTTATGTTGC 1868 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2999 TAATCACTATATTGACTCAAGACATTGGCAGCGAAACCGAAGCTCTTAACTTTATGTTGC 3058 Query 1869 AAGCTCAGAGCAGGGCTTCTAAGCTTGGGACAGAGTGTTTCTTTGGATTAGGAGAGACTG 1928 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 3059 AAGCTCAGAGCAGGGCATCTAAGCTTGGGACAGAGTGTTTCTTTGGATCAGGAGAGACTG 3118 Query 1929 GAAAGCGAGAACAGAATTGGTTTGCTGCGACTTGCTGGAATCTTGGGTCAAGGTGTGGGA 1988 |||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||||||| Sbjct 3119 GAAAGCGAGAACGGAACTGGTTTGCTGTAACTTGCTGGAACCTTGGGTCAAGATGTGGGA 3178 Query 1989 AGGAAAAGAAGTATGAGCTCTGTGGTGAATTCTTGAGGCTGGCATCTGAATTTTATGGCT 2048 | | |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 3179 ATGCAAAGAAGTATGAGCTCTGTGGTGAATTCTTGAGGCTGGCATCGGAATTTTACAGCT 3238 Query 2049 ATAT-A--GATACTGATGAGTCTGGAGAAGACAAACTGATGATTTGCAGGTCCATAATAC 2105 |||| | ||||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 3239 ATATGATGGATACTGATGAGTCTGGAGAAAACAAAATGATGATTTGCAGGTCCATAATAC 3298 Query 2106 TAAGTGTCACCGCTATGATTGCTTTGGAGAAGCAAACCAAGAGCGCACTGACTGAAACCC 2165 ||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| | Sbjct 3299 TAAATGTCACCGCTATGATTGCTTTGGAGAAGCAAAACAAGAGCGCACTGACTGAAACTC 3358 Query 2166 AAGTGAAACTTGCTGCAGAATTGCTCGTGAGAGCAGGAAAGATTATGTCTTCTTCGCTCT 2225 ||||||||||||||||||||||| | | | ||||||||||||||||||| Sbjct 3359 AAGTGAAACTTGCTGCAGAATTG--C-T-----C-------ATTATGTCTTCTTCGCTCT 3403 Query 2226 CAGATGGTAAAGATTGTATCATGGAGCCAGAACTCATCTTTATGTACACTTTACTTGCGT 2285 || ||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||| Sbjct 3404 CAAATGGTAAAGATTGTATCATGGAGCCAGAACTCAACTTCATGTACACCTTACTTGCGT 3463 Query 2286 ATGACATACACGGAAGGCTCAACAATTCGGCATTCCAGTTACTTGTGGTAAAGACGTTTG 2345 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3464 ATGACATACACGGAAGGCTCAACAATTCGGCATTCCAGTTACTTGTGGTAAAGACATTTG 3523 Query 2346 CTGGTTCCAAGTCTTGTCATTACAACTATCTTCTCCAACTTGGAATTTTCGCCTCTCAAA 2405 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3524 CTGGTTCCAAGTCTTGTCATTACAATTATCTTCTCCAACTTGGAATTTTCGCCTCTCAAA 3583 Query 2406 GCCCTCAGTCCAACCCGGACGTGTCAACATTTGCTCTTAACGAATGCCTATCCGCTCTGA 2465 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 3584 GCCCTCAGTCCAACCCAGACGTGTCAACATTTGCTCTTAACGAATGCCTATCCGCTCTGA 3643 Query 2466 TCGCATCTGCTTCACCAGAGTACCCAACCATAGCTCTTATAATCAGGAAGCTGATCTCCA 2525 ||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| || Sbjct 3644 TCGCATCCGCTTCACCAGATTACCCAACCATAGCTCTCATAATCAGGAAGCTGATCTTCA 3703 Query 2526 TAGCCAGCGTCCACAAAGGCGATACAGACGATGAAGAAGCAATCTTAAAGATGTACAAAC 2585 || ||||| ||||||||||||||||| |||||||||||||||| |||||||||||||||| Sbjct 3704 TATCCAGCATCCACAAAGGCGATACAAACGATGAAGAAGCAATTTTAAAGATGTACAAAC 3763 Query 2586 AAGCATACAGAATCATGGTTGGGTTGAAGGAAGGGGAATACCCGACTGAAGAAGGGAAAT 2645 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 3764 TGGCATACAGAATCATGGTTGGGTTAAAGGAAGGGGAATACCCGACTGAAGAAGGGAAAT 3823 Query 2646 GGCTCGCAATGACAGCTTGGAACCGAGCAGCGTTGCCCGTGAGGCTAGGACAGTTTGAGA 2705 ||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| Sbjct 3824 GGCTCGCAATGACAGCTTGGAACCGAGCAGCATTGCCCGTGAGGTTAGGACAGTTTGAGA 3883 Query 2706 CCGCTAAAAAATGGCTGAGCATCGGG-TTGGAAATCGCTGATAAGGTTACAGGTATGGAT 2764 |||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||| Sbjct 3884 CCGCTAAAAAATGGCTGAGCAT-GGGTTTGGAAATAGCTGAGAAGGTTACAGGTATGGAT 3942 Query 2765 ACTTATAAAGCTTGTATGCAGGATTACTTGGCTGGTTTTCAGACCAAAGTTTCTTCTGCT 2824 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3943 ACTTATAAAGCTTGTATGCAGGATTACTTGGCTGGTTTTCAGACCAAAGTTTCTTCTGCT 4002 Query 2825 TAG 2827 ||| Sbjct 4003 TAG 4005 Score = 63.9 bits (34), Expect = 6e-09 Identities = 36/37 (97%), Gaps = 0/37 (0%) Strand=Plus/Plus Query 1583 AAGTTCAAGATCTACCTGCAAAAGAAGGAACACAGTT 1619 ||||||||||||||||||||||||||||| ||||||| Sbjct 2842 AAGTTCAAGATCTACCTGCAAAAGAAGGAGCACAGTT 2878 > Ahg931132 jgi|Araly1|931132|scaffold_303589.1 Length=314 Score = 215 bits (116), Expect = 2e-54 Identities = 172/198 (87%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 876 TGCATTTGCAGAAGGGAGAGT-TCGAGAATGTGATAAAATGTGTGA-AAGTTCT-AAGGA 932 |||| ||||| |||||||||| | |||| | |||| |||||||| | ||||||| || || Sbjct 68 TGCACTTGCAAAAGGGAGAGTAT-GAGAGTATGATCAAATGTGT-ACAAGTTCTCAA-GA 124 Query 933 ATGGAGGAAATGGT-AGTGATGGAGCTGATCAACATGCTTCATTACCTGTGTTGGCGATG 991 ||||||||||| | || |||||||| ||| ||||||| |||||| ||||||||||||| Sbjct 125 ATGGAGGAAAT-TTCAGGGATGGAGCACATCGACATGCTCCATTACATGTGTTGGCGATG 183 Query 992 AAGGCTTGGTTAGGACTTGGGAGGCATAGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTG 1051 ||| ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| Sbjct 184 AAGTCTTGGTTAGGACTTGGGAGGCATAGTGAGGCAGAGGAGGAGCTAAGAGGTATGGTA 243 Query 1052 GGAAACAATGATATTCCA 1069 |||||||| || |||||| Sbjct 244 GGAAACAAAGACATTCCA 261 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 107452581145 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5