BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48390.1
Length=2847
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331248 jgi|Araly1|331248|fgenesh1_pm.C_scaffold_8000591 2206 0.0
Ahg931132 jgi|Araly1|931132|scaffold_303589.1 215 2e-54
> Ahg331248 jgi|Araly1|331248|fgenesh1_pm.C_scaffold_8000591
Length=4005
Score = 2206 bits (1194), Expect = 0.0
Identities = 1315/1375 (96%), Gaps = 2/1375 (0%)
Strand=Plus/Plus
Query 179 AGACAATTCCTAACTCGGCTGAGTCAACTTGCTCCTTTTCCCGATAACTCCTTCAAGCTT 238
||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1471 AGACAATCCCTAACTCGACTGAGTCAACTCGCTCCTTTTCCCGATAACTCCTTCAAGCTC 1530
Query 239 ACCATATGGAAACTCAGCTTTCGCCTCTGGAATGCTTGTGTTGATCTCGCTAACGCCGCC 298
||||||||||| || ||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1531 ACCATATGGAAGCTTAGCTTTCGCCTCTGGAACGCTTGTGTTGATCTCTCTAACGCCGCC 1590
Query 299 TCTCTCCAATCCTCTTTAACCTCCGCCGAGAACATTGCGAATCTCAGACATGTTGCCGCC 358
||||| |||||||||| ||||||||| |||| ||| ||||||||||| ||||||||||||
Sbjct 1591 TCTCTACAATCCTCTTCAACCTCCGCTGAGAGCATCGCGAATCTCAGGCATGTTGCCGCC 1650
Query 359 GATATGCTTTTTCTCGCTAAGGACGTTACCGGTGTTCCATCTCCGACGATTAAGTCCTCT 418
|||||||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1651 GATATGCTATTTCTCGCTAAGGATGTTACCGGAGTTCCATCTCCGACGATTAAGTCTTCT 1710
Query 419 CTATTCTACTATAAGACCGGTCTTGTTTATCACAGTCTCAAGAAATTCGATCTCGCCTCC 478
|| |||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1711 CTCTTCTACTATAGGACCGGTCTCGTTTATCACAGTCTCAAGAAATTTGATCTCGCCTCC 1770
Query 479 GATTGCTTCGAGAGAGCCACCGAAATCGTCTCGAAAATTGATATCGCGAAAATTTCCGAT 538
| |||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1771 GGTTGCTTTGAGAGAGCAACCGAAATCGTTTCGAAAATCGATATCGCGAAAATTTCCGAT 1830
Query 539 GCCGGAGAAAAGAAATTGTTTCTGGATCTAAACCTAGCTAGATCTCGAACTGCCTGGGAA 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1831 GCCGGAGAAAAGAAATTGTTTCTGGATCTAAACCTAGCTAGATCTCGAACTGCCTGGGAA 1890
Query 599 ATTTCTGATAGGAATTTAGCTGTAACGTTGCTTAATCGGGCGAAGAATTTGTTGTTTGGT 658
|||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||
Sbjct 1891 ATTTCTGATAGGAATTTAGCTGTAACGTTGCTCAATCGAGCGAAGAATATGTTGTTTGGT 1950
Query 659 TCACCGGATCACTACAAATCGCTCTCAAATCAATTCCTTGCGTTTGGTAAAAGCTCTTTG 718
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1951 TCACCGGATCATTACAAATCGCTCTCAAATCAATTCCTTGCGTTTGGTAAAAGCTCTTTG 2010
Query 719 TCTAGAGGTGACGACGATTGCAGTCTAAACGACGCTCTTAGGTTAATGAATGAAGCGTTG 778
||||||| |||||||||||||||||||||||| ||||||||| | ||||||||||| |||
Sbjct 2011 TCTAGAGATGACGACGATTGCAGTCTAAACGATGCTCTTAGGCTCATGAATGAAGCATTG 2070
Query 779 GATCTTTGTGAGAAGGGATTAGGTACAGCAAAAACTCGGGAAGATACTACGGAGTTCACG 838
|||||||||||||||||||||||||| |||||||||||||||||||| | ||||||||||
Sbjct 2071 GATCTTTGTGAGAAGGGATTAGGTACTGCAAAAACTCGGGAAGATACCATGGAGTTCACG 2130
Query 839 GCCATGAGAATCAAAACTCTGCGTTTCATATCAGCAGTGCATTTGCAGAAGGGAGAGTTC 898
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2131 GGGATGAGAATCAAAACTCTGCGTTTCATATCAGCAGTGCATTTGCAGAAGGGAGAGTTC 2190
Query 899 GAGAATGTGATAAAATGTGTGAAAGTTCTAAGGAATGGAGGAAATGGTAGTGATGGAGCT 958
||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2191 GAGAATGTGATCAAATGTGTGAAAGTTCTCAGGAATGGAGGAAATGGTAGTGATGGAGCA 2250
Query 959 GATCAACATGCTTCATTACCTGTGTTGGCGATGAAGGCTTGGTTAGGACTTGGGAGGCAT 1018
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 2251 GATCAACATGCTTCATTACCTGTGTTGGCGATGAAGGCTTGGTTAGGGCTTGGGAGACAT 2310
Query 1019 AGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTGGGAAACAATGATATTCCAGAGGCAGTG 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2311 AGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTGGGAAACAATGATATTCCAGAGGCTGTG 2370
Query 1079 TGGGTATCTGCTGTGGAAGCATATTTTGAGGTGGTTGGG-ACTGCTGGAGCAGAAACTGC 1137
|||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 2371 TGGGTATCTGCTGTGGAAGCATATTTTGAGGTGG-TGGGAACTGCTGGAGCAGAAACTGC 2429
Query 1138 AAAGGGTGTGTTCTTAGGTCTGCTGGGAAGGTGTCATGTCAGTGCAAAGGCGGCACTTAG 1197
||||||||||||||||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 2430 AAAGGGTGTGTTCTTAGGTTTGCTGGGAAGGTGTCATGTTAGTGCAAAGGCGGCGCTTAG 2489
Query 1198 AGTGGCTCATCGGGTGCTTGGTGAGAGTAGGGGAGGTGATAATGGTTCGAGAATTAGGGC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2490 AGTGGCTCATCGGGTGCTTGGTGAGAGTAGGGGAGGTGATAATGGTTCGAGAATTAGGGC 2549
Query 1258 GAACGTTGTGGCTCAGCTCGTGTCAGATGAGAGAGTTGTTGCTCTCTTTGCTAGTGAAGC 1317
|| ||||||||||||||||| ||||| |||||||||||||||||||||||| |||||||
Sbjct 2550 AAATGTTGTGGCTCAGCTCGTATCAGACGAGAGAGTTGTTGCTCTCTTTGCTGGTGAAGC 2609
Query 1318 TGTGACTAAGGAGAGGAAGGCAATACATTCTGTTCTCTGGAACAGTGCTTCAGATCATTT 1377
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2610 AGTGACCAAGGAGAGGAAGGCAATACATTCTGTTCTCTGGAACAGTGCTTCAGATCATTT 2669
Query 1378 CCGTGCTAAAGATTATGAGACAAGTGCAGAGATGTTTGAGAAATCAATGCTCTATATTCC 1437
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2670 CCGTGCTAAAGATTATGAGACAAGTGCAGAGATGTTTGAGAAGTCAATGCTCTATATTCC 2729
Query 1438 ACATGATATAGAAAATAGAGTTTTCAGGGCCAAAGGCTTCAGGGTTTTGTGTCTTTGCTA 1497
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2730 ACATGATATAGAAAATAGAGTTTTCAGGGCCAAAGGCTTCAGGGTTTTGTGTCTTTGCTA 2789
Query 1498 CCTTGGGCTCTCTCAGCTGGATCGAGCTCTTGAATACATAGAAGAAGCTGAAAAG 1552
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2790 CCTTGGGCTCTCTCAGCTGGATCGAGCTCTTGAATACATAGAAGAAGCTGAAAAG 2844
Score = 1733 bits (938), Expect = 0.0
Identities = 1078/1143 (94%), Gaps = 20/1143 (2%)
Strand=Plus/Plus
Query 1689 CGCATGAAGCTATTTCTTGCCAAGCGCTTCCAGTTGCTGTTGCTTCTCTTTCCAAGTTTC 1748
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2879 CGCATGAAGCTATTTCTTGCCAAGCGCTTCCAGTTGCTGTTGCTTCTCTTTCCAAGTTTC 2938
Query 1749 TCAGTTTCTATATCTCAGGaaaaaaaaTGCCAACCACAGAGGTTGTGGTCTTCCGTACCT 1808
|||||||||||||||| ||||||| |||||||||||||||||| |||||||| |||||||
Sbjct 2939 TCAGTTTCTATATCTCTGGAAAAACAATGCCAACCACAGAGGTCGTGGTCTTTCGTACCT 2998
Query 1809 TAGTCACTATATTGACTCAAGACATTGGCAGCGAAACCGAAGCTCTTAACTTTATGTTGC 1868
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2999 TAATCACTATATTGACTCAAGACATTGGCAGCGAAACCGAAGCTCTTAACTTTATGTTGC 3058
Query 1869 AAGCTCAGAGCAGGGCTTCTAAGCTTGGGACAGAGTGTTTCTTTGGATTAGGAGAGACTG 1928
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 3059 AAGCTCAGAGCAGGGCATCTAAGCTTGGGACAGAGTGTTTCTTTGGATCAGGAGAGACTG 3118
Query 1929 GAAAGCGAGAACAGAATTGGTTTGCTGCGACTTGCTGGAATCTTGGGTCAAGGTGTGGGA 1988
|||||||||||| ||| |||||||||| ||||||||||| ||||||||||| |||||||
Sbjct 3119 GAAAGCGAGAACGGAACTGGTTTGCTGTAACTTGCTGGAACCTTGGGTCAAGATGTGGGA 3178
Query 1989 AGGAAAAGAAGTATGAGCTCTGTGGTGAATTCTTGAGGCTGGCATCTGAATTTTATGGCT 2048
| | |||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 3179 ATGCAAAGAAGTATGAGCTCTGTGGTGAATTCTTGAGGCTGGCATCGGAATTTTACAGCT 3238
Query 2049 ATAT-A--GATACTGATGAGTCTGGAGAAGACAAACTGATGATTTGCAGGTCCATAATAC 2105
|||| | ||||||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 3239 ATATGATGGATACTGATGAGTCTGGAGAAAACAAAATGATGATTTGCAGGTCCATAATAC 3298
Query 2106 TAAGTGTCACCGCTATGATTGCTTTGGAGAAGCAAACCAAGAGCGCACTGACTGAAACCC 2165
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 3299 TAAATGTCACCGCTATGATTGCTTTGGAGAAGCAAAACAAGAGCGCACTGACTGAAACTC 3358
Query 2166 AAGTGAAACTTGCTGCAGAATTGCTCGTGAGAGCAGGAAAGATTATGTCTTCTTCGCTCT 2225
||||||||||||||||||||||| | | | |||||||||||||||||||
Sbjct 3359 AAGTGAAACTTGCTGCAGAATTG--C-T-----C-------ATTATGTCTTCTTCGCTCT 3403
Query 2226 CAGATGGTAAAGATTGTATCATGGAGCCAGAACTCATCTTTATGTACACTTTACTTGCGT 2285
|| ||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||
Sbjct 3404 CAAATGGTAAAGATTGTATCATGGAGCCAGAACTCAACTTCATGTACACCTTACTTGCGT 3463
Query 2286 ATGACATACACGGAAGGCTCAACAATTCGGCATTCCAGTTACTTGTGGTAAAGACGTTTG 2345
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3464 ATGACATACACGGAAGGCTCAACAATTCGGCATTCCAGTTACTTGTGGTAAAGACATTTG 3523
Query 2346 CTGGTTCCAAGTCTTGTCATTACAACTATCTTCTCCAACTTGGAATTTTCGCCTCTCAAA 2405
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3524 CTGGTTCCAAGTCTTGTCATTACAATTATCTTCTCCAACTTGGAATTTTCGCCTCTCAAA 3583
Query 2406 GCCCTCAGTCCAACCCGGACGTGTCAACATTTGCTCTTAACGAATGCCTATCCGCTCTGA 2465
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3584 GCCCTCAGTCCAACCCAGACGTGTCAACATTTGCTCTTAACGAATGCCTATCCGCTCTGA 3643
Query 2466 TCGCATCTGCTTCACCAGAGTACCCAACCATAGCTCTTATAATCAGGAAGCTGATCTCCA 2525
||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||| ||
Sbjct 3644 TCGCATCCGCTTCACCAGATTACCCAACCATAGCTCTCATAATCAGGAAGCTGATCTTCA 3703
Query 2526 TAGCCAGCGTCCACAAAGGCGATACAGACGATGAAGAAGCAATCTTAAAGATGTACAAAC 2585
|| ||||| ||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 3704 TATCCAGCATCCACAAAGGCGATACAAACGATGAAGAAGCAATTTTAAAGATGTACAAAC 3763
Query 2586 AAGCATACAGAATCATGGTTGGGTTGAAGGAAGGGGAATACCCGACTGAAGAAGGGAAAT 2645
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3764 TGGCATACAGAATCATGGTTGGGTTAAAGGAAGGGGAATACCCGACTGAAGAAGGGAAAT 3823
Query 2646 GGCTCGCAATGACAGCTTGGAACCGAGCAGCGTTGCCCGTGAGGCTAGGACAGTTTGAGA 2705
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 3824 GGCTCGCAATGACAGCTTGGAACCGAGCAGCATTGCCCGTGAGGTTAGGACAGTTTGAGA 3883
Query 2706 CCGCTAAAAAATGGCTGAGCATCGGG-TTGGAAATCGCTGATAAGGTTACAGGTATGGAT 2764
|||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||||
Sbjct 3884 CCGCTAAAAAATGGCTGAGCAT-GGGTTTGGAAATAGCTGAGAAGGTTACAGGTATGGAT 3942
Query 2765 ACTTATAAAGCTTGTATGCAGGATTACTTGGCTGGTTTTCAGACCAAAGTTTCTTCTGCT 2824
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3943 ACTTATAAAGCTTGTATGCAGGATTACTTGGCTGGTTTTCAGACCAAAGTTTCTTCTGCT 4002
Query 2825 TAG 2827
|||
Sbjct 4003 TAG 4005
Score = 63.9 bits (34), Expect = 6e-09
Identities = 36/37 (97%), Gaps = 0/37 (0%)
Strand=Plus/Plus
Query 1583 AAGTTCAAGATCTACCTGCAAAAGAAGGAACACAGTT 1619
||||||||||||||||||||||||||||| |||||||
Sbjct 2842 AAGTTCAAGATCTACCTGCAAAAGAAGGAGCACAGTT 2878
> Ahg931132 jgi|Araly1|931132|scaffold_303589.1
Length=314
Score = 215 bits (116), Expect = 2e-54
Identities = 172/198 (87%), Gaps = 8/198 (4%)
Strand=Plus/Plus
Query 876 TGCATTTGCAGAAGGGAGAGT-TCGAGAATGTGATAAAATGTGTGA-AAGTTCT-AAGGA 932
|||| ||||| |||||||||| | |||| | |||| |||||||| | ||||||| || ||
Sbjct 68 TGCACTTGCAAAAGGGAGAGTAT-GAGAGTATGATCAAATGTGT-ACAAGTTCTCAA-GA 124
Query 933 ATGGAGGAAATGGT-AGTGATGGAGCTGATCAACATGCTTCATTACCTGTGTTGGCGATG 991
||||||||||| | || |||||||| ||| ||||||| |||||| |||||||||||||
Sbjct 125 ATGGAGGAAAT-TTCAGGGATGGAGCACATCGACATGCTCCATTACATGTGTTGGCGATG 183
Query 992 AAGGCTTGGTTAGGACTTGGGAGGCATAGTGAGGCAGAGAAGGAGCTGAGAGGTATGGTG 1051
||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct 184 AAGTCTTGGTTAGGACTTGGGAGGCATAGTGAGGCAGAGGAGGAGCTAAGAGGTATGGTA 243
Query 1052 GGAAACAATGATATTCCA 1069
|||||||| || ||||||
Sbjct 244 GGAAACAAAGACATTCCA 261
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107452581145
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5