BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48430.1
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494897 jgi|Araly1|494897|fgenesh2_kg.8__713__AT5G48430.1 1953 0.0
> Ahg494897 jgi|Araly1|494897|fgenesh2_kg.8__713__AT5G48430.1
Length=1416
Score = 1953 bits (1057), Expect = 0.0
Identities = 1303/1422 (92%), Gaps = 15/1422 (1%)
Strand=Plus/Plus
Query 19 TTTCCAACAATCTTAAACACAAACACGCAAAAGATGGAAAAGAGTCTTCTTGTCCTCTGT 78
||||||||||| ||| ||| ||| || |||||||||||||||||||| ||||||||||
Sbjct 1 TTTCCAACAATTTTAGACATAAAGACTTAAAAGATGGAAAAGAGTCTTGTTGTCCTCTGC 60
Query 79 CTCATTTTGTTTTTTA-CTTATAGTTACGTCTCGGCTAATTACTATCCACCTAAAGCCTT 137
||| ||||| |||| | |||||||||||||||| ||| || | ||| |||| ||| | ||
Sbjct 61 CTCCTTTTG-TTTTCAGCTTATAGTTACGTCTCTGCTCATAATTATTCACCGAAAACATT 119
Query 138 AGTATCAACCGTCTCTAAGAACACAATCTTGCCTATCTTCACCTTCACACTCAACACAAA 197
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 120 AGTATCAACCGTCTCTAAGAACACAATCTTGCCCATCTTCACCTTCACACTCAACAAAAA 179
Query 198 CCAAGAGTTTTTCATTCACATCGGCGGTCCCTATCTTGTCCGTAAATGCAACGATGGTCT 257
|||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 180 CCAAGAATTTTTCATTCACATCGGCGGGCCCTATCTTGTCCGCAAATGCAACGATGGTCT 239
Query 258 CCCTCGTCCCATCGTCCCTTGTGGCTCCCCCGTATGTGCTCTAACTCGTAGA-TTCA-CT 315
||||||||||||||||||||| | |||||| || |||||||| |||||| || || | |
Sbjct 240 CCCTCGTCCCATCGTCCCTTGCGACTCCCCAGTGTGTGCTCTCACTCGTGGAGTT-AGC- 297
Query 316 CCTCACCAATGCTCTCTTCCCAGCAACAAAATCATCAATGGAGTATGTGCTTGCCAAGCA 375
|||||||||||| ||||||||| ||||| | ||||||| ||||| |||||||||||||||
Sbjct 298 CCTCACCAATGCCCTCTTCCCACCAACACAGTCATCAACGGAGTGTGTGCTTGCCAAGCA 357
Query 376 ACCGCTTTTGAGCCATTCCAACGTATATGTAACTCTGACCAATTCACCTATGGAGATTTA 435
||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 358 ACCGCCTTTGAGCCATTCCAACGTCTATGTAACTCTGACCAATTCACTTATGGAGATTTA 417
Query 436 TCCATCTCTTCTCTAAAACCTATATCTCCTTCGGTCACGATCAACAACGTTTATTACCTA 495
||||||||||||||||| ||||||||||| ||||||||| |||||||||| |||||||||
Sbjct 418 TCCATCTCTTCTCTAAACCCTATATCTCCCTCGGTCACGGTCAACAACGTCTATTACCTA 477
Query 496 TGCATCCCCCAA-CCGTTCCTTGTAGACTTCCCTCCCGGTGTTTTCGGCCTTGCGGGGCT 554
||||| |||||| |||||||| || |||||||||||||||||||||||||| ||||||||
Sbjct 478 TGCAT-CCCCAAGCCGTTCCTCGTGGACTTCCCTCCCGGTGTTTTCGGCCTCGCGGGGCT 536
Query 555 TGCACCTACGGCTCTCGCCACTTGGAACCAGCTGACTCGACCTAGACTCGGACTCGAGAA 614
|||||| || ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 537 TGCACCCACCGCTCTCGCCACATGGAACCAGCTTACTCGACCTAGACTCGGACTCGAGAA 596
Query 615 GAAGTTTGCGTTGTGTCTTCCTTCTGATGAAAACCCTTTGAAAAAAGGTGCTATTTACTT 674
|||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 597 GAAGTTTGCGTTGTGTCTTCCTTCTGATGAAAGTCCTTTGAACAAAGGTGCTATTTACTT 656
Query 675 TGGTGGAGGTCCGTACAAGCTCAGAAACATTGATGCAAGATCTATGCTCTCTTACACTCG 734
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 657 TGGTGGAGGTCCGTACAAGCTCAGAAACATTGATGCAAGATCCATGCTCTCTTACACTCG 716
Query 735 ATTGATTACAAACCCTAGAAAACTCAACAACTATTTCTTGGGACTCAAGGGTATTTCCGT 794
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 ATTGATTAGAAACCCTAGAAAACTCAACAACTATTTCTTGGGACTCAAGGGTATTTCCGT 776
Query 795 TAACGGGAATAGGATCTTGTTTGCCCCAAACGCTTTTGCTTTTGACCGCAACGGTGATGG 854
||||||||| ||||||||| |||| ||||||||||||| ||| |||||||||||||| ||
Sbjct 777 TAACGGGAAAAGGATCTTGCTTGCACCAAACGCTTTTGATTTCGACCGCAACGGTGACGG 836
Query 855 AGGCGTTACTCTAAGCACCATATTCCCTTTCACTATGTTACGAAGCGACATATACAGAGT 914
|||||| |||||||||||| | ||||||||||||| |||| ||||||||||||||| |||
Sbjct 837 AGGCGTGACTCTAAGCACCGTTTTCCCTTTCACTACGTTAAGAAGCGACATATACAAAGT 896
Query 915 CTTTATCGAAGCATTCTCACAAGCCACATCGGGTATTCCACGTGTCAGTAGCACGACACC 974
|||||| ||||||||| || ||||||| |||| |||||||||||||| ||||||||||||
Sbjct 897 CTTTATTGAAGCATTCGCAAAAGCCACGTCGGATATTCCACGTGTCATTAGCACGACACC 956
Query 975 CTTTGAGTTTTGTCTTTCGACGACGACAAATTTCCAAGTGCCTAGGATCGATCTAGAGCT 1034
||| |||||||||||| | | ||||||||||||||||||||| ||||||||||||||||
Sbjct 957 CTTGGAGTTTTGTCTTAAGTCAACGACAAATTTCCAAGTGCCTCGGATCGATCTAGAGCT 1016
Query 1035 AGCTAATGGTGTGATTTGGAAATTGTCTCCCGCAAACGCGATGAAGAAGGTCAGCGATGA 1094
|||| ||| |||||||||||| ||||||||||||||||||||||||||||||| |||||
Sbjct 1017 AGCTGCTGGGGTGATTTGGAAAGTGTCTCCCGCAAACGCGATGAAGAAGGTCAGTGATGA 1076
Query 1095 CGTGGCTTGCTTGGCTTTTGTCAACGGAGGAGATGCGGCGGCGCAGGCGGTGATGATAGG 1154
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| ||
Sbjct 1077 CGTGGCTTGCTTGGCTTTCGTCAACGGAGGAGATGCGGCGGCGCAGGCGGTGGTGATCGG 1136
Query 1155 AATACATCAGATGGAAAATACTTTGGTGGAGTTTGACGTTGGAAGATCTGCTTTTGGATT 1214
| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ATTACATCAGATGGAAAACACTTTGGTGGAGTTTGACGTTGGAAGATCTGCTTTTGGATT 1196
Query 1215 TAGTTCTTCTTTGGGTTTGGTCAGCGCTTCATGCGGCGACTTTCAAACACGGCCATGAGA 1274
||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||||||
Sbjct 1197 TAGTTGTTCTTTGGGTTTGGTCAACGCTTCATGCGGTGACTTTCAAACACGGCCATGAGA 1256
Query 1275 ATGTCAAA--ACA-A-CTTGATAGTTGACATTATCTTGTGATTGAATATTTATTTGTCAG 1330
|||||||| | | | |||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 1257 ATGTCAAATTAAAGAACTTGATAGTTGACATTCTCTTGTGATTGAATATTTATTTGTTAG 1316
Query 1331 T-ACTCTGGCTTCATTTGTTATGTAACATTCATGTCAAGTGTGGTTTTAAAAAATTTAGT 1389
| | |||||||||||||||||| || || ||||| |||||||||||| || ||||||
Sbjct 1317 TTAATCTGGCTTCATTTGTTATATAT-ATA-ATGTCGAGTGTGGTTTTATAATTTTTAGT 1374
Query 1390 CAATGACGAATGTCAAAGAATGTAATAAAACACTAAAGTTTT 1431
|||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1375 CAATAACGAATGTCAAAGAATGTAATAAAACATTAAAGTTTT 1416
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54316689370
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5