BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48450.1 Length=1918 Score E Sequences producing significant alignments: (Bits) Value Ahg916339 jgi|Araly1|916339|Al_scaffold_0008_1090 2614 0.0 Ahg943148 jgi|Araly1|943148|scaffold_603692.1 172 7e-42 Ahg918479 jgi|Araly1|918479|Al_scaffold_0008_3230 76.8 5e-13 Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1 71.3 2e-11 > Ahg916339 jgi|Araly1|916339|Al_scaffold_0008_1090 Length=1671 Score = 2614 bits (1415), Expect = 0.0 Identities = 1589/1670 (95%), Gaps = 24/1670 (1%) Strand=Plus/Plus Query 53 ATGCGGTGCTTTCCACCTCCCTTATGGTGCACCTCC-TTGGTCGTTTTCTTGTCGGTTAC 111 ||||||||||||||||| | ||| |||||||||||| || ||| |||||||||||||||| Sbjct 1 ATGCGGTGCTTTCCACCGCACTTCTGGTGCACCTCCGTT-GTCCTTTTCTTGTCGGTTAC 59 Query 112 CGGAGCCCTAGCCGCCGATCCCTACGTCTTCTTCGATTGGACTGTCTCTTACCTCTCTGC 171 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 60 CGGAACCCTAGCCGCCGATCCTTACGTCTTCTTCGATTGGACTGTCTCTTACCTCTCTGC 119 Query 172 TTCTCCTCTCGGCACTCGTCAACAGGTAATTGGGATAAATGGGCAATTTCCTGGTCCGAT 231 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 TTCTCCTTTCGGCACTCGTCAACAGGTAATTGGGATAAATGGGCAATTTCCTGGTCCGAT 179 Query 232 TCTAAACGTAACTACGAATTGGAATGTTGTTATGAATGTGAAGAATAATCTTGATGAGCC 291 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 180 TCTAAACGTAACTACGAATTGGAATGTTGTTATGAATGTGAAGAATAATCTTGATGAGCC 239 Query 292 ATTGCTTCTTACATGGAATGGAATCCAACATAGGAAAAACTCATGGCAAGATGGTGTTTT 351 ||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| Sbjct 240 ATTGCTTCTTACATGGAATGGGATACAACATAGGAAAAATTCATGGCAAGATGGTGTTTT 299 Query 352 GGGAACTAATTGTCCAATTCCTTCTGGTTGGAATTGGACTTATGAGTTTCAAGTTAAAGA 411 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GGGAACTAATTGTCCAATTCCTTCTGGTTGGAATTGGACTTATGAGTTTCAAGTTAAAGA 359 Query 412 TCAGATTGGTAGTTTCTTTTATTTTCCTTCTACAAATTTTCAAAGAGCTTCTGGTGGTTA 471 ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || Sbjct 360 TCAGATTGGTAGTTTCTTTTATTTTCCATCTACAAATTTTCAGAGAGCTTCTGGTGGGTA 419 Query 472 TGGAGGGATTATTGTCAATAATCGCGCTATCATTCCGGTTCC-TTTCGCTCTTCCTGATG 530 ||||||||||||| |||||||||| | |||||||||||||| ||| ||||||||||||| Sbjct 420 TGGAGGGATTATTATCAATAATCGAGAAATCATTCCGGTTCCATTT-GCTCTTCCTGATG 478 Query 531 GTGATGTTACTCTCTTTATCAGTGATTGGTATACTAAGAGCCATAAGAAGCTGAGGAAGG 590 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GTGATGTTACTCTCTTTATCAGTGATTGGTATACTAAGAGCCATAAGAAGCTGAGGAAGG 538 Query 591 ATGTTGAGAGTAAGAACGGCCTTCGACCTCCGGATGGTATTGTCATCAATGGATTTGGAC 650 |||||||||||||||| |||||| ||||||| ||||||||| | || ||||||||||||| Sbjct 539 ATGTTGAGAGTAAGAAAGGCCTTGGACCTCCAGATGGTATTCTTATAAATGGATTTGGAC 598 Query 651 CTTTTGC-T----TC-T-A---A---T-G-GT-A--GTCCTTTTGGGACCATAAACGTTG 692 ||||| | | || | | | | | | | |||||||||||| |||||||||| Sbjct 599 CTTTTCCTTACACTCGTGAGCTAGCTTCGAATAATTTTCCTTTTGGGACAATAAACGTTG 658 Query 693 AACCAGGACGAACATATCGTTTTCGTGTTCACAATAGTGGCATTGCGACCAGCTTGAATT 752 |||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| Sbjct 659 AACCAGGACGAACATATCGTTTTCGTGTTCACAACAGTGGCATTGCAACCAGCCTGAATT 718 Query 753 TCAGAATACAGAATCATAACCTGCTTCTTGTTGAGACAGAAGGGTCATACACAATTCAGC 812 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 719 TCAGAATACAGAATCATAACCTGCTTCTTGTTGAGACAGAAGGGTCATACACAGTTCAGC 778 Query 813 AGAATTATACGAATATGGATATACATGTGGGTCAATCTTTCTCATTTCTGGTCACTATGG 872 ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 779 AGAATTATACGAATATGGACATTCATGTGGGTCAATCTTTCTCATTTCTGGTCACTATGG 838 Query 873 ATCAGTCTGGTAGTAATGACTACTACATTGTTGCCAGCCCAAGGTTTGCTACATCCATCA 932 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 839 ATCAGTCTGGTAGTAATGACTACTACATTGTTGCCAGCCCAAGGTTTTCTACATCCATCA 898 Query 933 AAGCTAGTGGAGTCGCTGTCTTGCGCTACTCTAATTCCCAAGGACCCGCTTCAGGTCCAC 992 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 899 AAGCTAGTGGAGTCGCTGTCTTGCGCTACTCTAATTCCCAAGGACCCGCTTCAGGTCCAC 958 Query 993 TCCCTGATCCTCCTATTGAGTTGGACACATTTTTCTCAATGAACCAAGCACGATCCTTAA 1052 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 959 TCCCTGATCCTCCTATTGAGTTGGACACATTTTTCTCAATGAACCAAGCACGATCCTTAA 1018 Query 1053 GGTTGAATTTGTCATCTGGAGCTGCCCGTCCAAACCCGCAGGGATCTTTCAAATATGGCC 1112 |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1019 GGTTGAATTTGTCAGCTGGAGCTGCCCGCCCAAACCCGCAGGGATCTTTCAAATATGGCC 1078 Query 1113 AGATTACAGTAACTGATGTGTATGTGATTGTCAACCGACCACCAGAGATGATAGA-GGGA 1171 ||||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||| Sbjct 1079 AGATTACAGTAACTGATGTTTATGTGATTGTCAACCGATCACCAGAGATGATAGAAGGG- 1137 Query 1172 CGATTGCGTGCAACTCTTAATGGTATATCATACTTACCTCCTGCAACACCCCTAAAGCTT 1231 ||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1138 CGATTGCGTGCCACTCTTAATGGTATATCATACTTACCTCCTTCAACACCCCTAAAGCTT 1197 Query 1232 GCTCAGCAATACAACATCTCAGGGGTATACAAGTTGGATTTCCCAAAAAGGCCAATGAAT 1291 |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||| Sbjct 1198 GCTCAGCAATACAACATCTCAGGGGTATACAAGTTGGATTTCCCCAAAAGACCGATGAAT 1257 Query 1292 AGGCATCCCAGGGTTGATACCTCAGTCATAAACGGCACGTTCAAGGGATTCGTGGAAATC 1351 ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1258 AGGCACCCCAGGGTTGATACCTCTGTCATAAACGGCACGTTCAAGGGATTCGTGGAAATC 1317 Query 1352 ATATTTCAAAATAGTGACACCACTGTTAAGAGCTACCACTTGGATGGTTATGCATTTTTT 1411 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1318 ATATTTCAGAATAGTGACACCACTGTTAAGAGCTACCACTTGGATGGTTATGCATTTTTT 1377 Query 1412 GTTGTTGGGATGGACTTTGGTCTGTGGACAGAAAATAGCAGAAGCACATACAACAAGGGT 1471 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1378 GTTGTTGGGATGGACTTTGGTCTGTGGACAGAAAATAGCAGAAGCACATACAACAAGGGG 1437 Query 1472 GATGCAGTTGCTCGATCTACTACGCAGGTGTTTCCTGGTGCATGGACGGCCGTCTTGGTT 1531 ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1438 GATGCAGTTGCTCGATCTACTACGCAGGTGTTTCCTGGTTCATGGACGGCCATCTTGGTT 1497 Query 1532 TCTTTGGACAATGCTGGCATGTGGAACCTTCGAATAGACAATCTAGCCTCATGGTATCTT 1591 |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1498 TCTTTGGACAATGCTGGCATGTGGAACCTTCGAATAGACAATCTCGCCTCATGGTATCTG 1557 Query 1592 GGCCAAGAACTATACTTGAGTGTGGTTAATCCAGAGATTGACATTGACTCATCTGAGAAT 1651 ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| Sbjct 1558 GGCCAAGAACTATACTTGAGTGTGGTTAATCCAGAGATTGACAGTGACTCGTCTGAGAAT 1617 Query 1652 TCCGTTCCTAAAAACTCTATATATTGTGGTCGGCTCTCACCATTACAAAA 1701 ||||||||| | ||| | |||||||||||||||||||||||||||||||| Sbjct 1618 TCCGTTCCTGACAACACCATATATTGTGGTCGGCTCTCACCATTACAAAA 1667 > Ahg943148 jgi|Araly1|943148|scaffold_603692.1 Length=1806 Score = 172 bits (93), Expect = 7e-42 Identities = 285/375 (76%), Gaps = 24/375 (6%) Strand=Plus/Plus Query 155 GTCTCTTACCTCT-CTGCTTCTCCTCTCGGCACTCGTCAACAGGTAATTGGGATAAATGG 213 ||||| ||| | | |||||||||| || || || ||||||||| |||| |||||| | Sbjct 113 GTCTCCTACAT-TACTGCTTCTCCACTTGGTGTTCCTCAACAGGTCATTGCTATAAAT-G 170 Query 214 GCAA-TTTCCTGGTCCGATTCTAAACGTAACTACGAATTG-GAATGTTGTTATGAATGTG 271 | || ||||||||||| | | || || || || || || ||| | ||| | ||||| Sbjct 171 GAAAGTTTCCTGGTCCTACAATCAATGTTACAACCAA-TGAAAATCTGGTTGTTAATGT- 228 Query 272 AAG-AA-TAATCTTGATGAGCCA-TTGCTTCTTACA-TGGAATGGAATCCAACATAGGA- 326 || || ||| | |||||| | || |||||| || ||||||||||||||||| | || Sbjct 229 CAGAAACAAAT-TGGATGAGGGACTT-CTTCTT-CATTGGAATGGAATCCAACAGA-GAC 284 Query 327 AAAACTCATGGCAAGATGGTGTTTTGGGAACTAATTGTCCAATTCCTTC-TGGTTGGAAT 385 |||||||||||||| ||||| ||||| |||||||| |||||| | | |||||| Sbjct 285 GTGTTTCATGGCAAGATGGAGTTTTAGGAACCAATTGTCCTATTCCTCCAAAG-TGGAAT 343 Query 386 TGGACTTATGAGTTTCAAGTTAAAGATCAGATTGGTAGTTTCTTTTATTTTCCTTCTA-C 444 ||||||||||||||||||||||| || || ||||| |||||||| || ||||||||| | Sbjct 344 TGGACTTATGAGTTTCAAGTTAAGGACCAAATTGGGAGTTTCTTCTACTTTCCTTCTCTC 403 Query 445 AAATTTTCA-AAGAGCTTCTGGTGGTTATGGAGGGATT-ATTGTCAATAATCGCGCTATC 502 | ||| || || |||||||||||||| ||| || ||||||||| | | || || Sbjct 404 CA-TTTCCAGAA-AGCTTCTGGTGGTTTTGGCTCC-TTCATTGTCAATCCTAGAGCGATT 460 Query 503 ATTCCGGTTCCTTTC 517 ||||| || |||||| Sbjct 461 ATTCCAGTCCCTTTC 475 > Ahg918479 jgi|Araly1|918479|Al_scaffold_0008_3230 Length=1632 Score = 76.8 bits (41), Expect = 5e-13 Identities = 73/88 (83%), Gaps = 4/88 (5%) Strand=Plus/Plus Query 281 CTTGATGAGCCATTGCTTCTT-ACATGGAATGGAATCCAA-CATAGGAAAAACTCATGGC 338 ||||| |||| || | |||| || |||||||| || || || ||||| |||||||||| Sbjct 244 CTTGACCAGCC-TTTCCTCTTGACCTGGAATGGGAT-TAAGCAGAGGAAGAACTCATGGC 301 Query 339 AAGATGGTGTTTTGGGAACTAATTGTCC 366 ||||||||||||||||||| || ||||| Sbjct 302 AAGATGGTGTTTTGGGAACAAACTGTCC 329 > Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1 Length=2097 Score = 71.3 bits (38), Expect = 2e-11 Identities = 57/66 (86%), Gaps = 2/66 (3%) Strand=Plus/Plus Query 1380 AGAGCTACCACT-TGGATGGTTATGCATTTTTTGTTGTTGGGATGGACTTTGGTCTGTGG 1438 |||||| ||| | | ||||| ||| ||||||||||||||||||||||||||||| | ||| Sbjct 1469 AGAGCTTCCA-TGTTGATGGATATTCATTTTTTGTTGTTGGGATGGACTTTGGTATCTGG 1527 Query 1439 ACAGAA 1444 ||||| Sbjct 1528 TCAGAA 1533 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 72066743540 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5