BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48450.1
Length=1918
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916339 jgi|Araly1|916339|Al_scaffold_0008_1090 2614 0.0
Ahg943148 jgi|Araly1|943148|scaffold_603692.1 172 7e-42
Ahg918479 jgi|Araly1|918479|Al_scaffold_0008_3230 76.8 5e-13
Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1 71.3 2e-11
> Ahg916339 jgi|Araly1|916339|Al_scaffold_0008_1090
Length=1671
Score = 2614 bits (1415), Expect = 0.0
Identities = 1589/1670 (95%), Gaps = 24/1670 (1%)
Strand=Plus/Plus
Query 53 ATGCGGTGCTTTCCACCTCCCTTATGGTGCACCTCC-TTGGTCGTTTTCTTGTCGGTTAC 111
||||||||||||||||| | ||| |||||||||||| || ||| ||||||||||||||||
Sbjct 1 ATGCGGTGCTTTCCACCGCACTTCTGGTGCACCTCCGTT-GTCCTTTTCTTGTCGGTTAC 59
Query 112 CGGAGCCCTAGCCGCCGATCCCTACGTCTTCTTCGATTGGACTGTCTCTTACCTCTCTGC 171
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGGAACCCTAGCCGCCGATCCTTACGTCTTCTTCGATTGGACTGTCTCTTACCTCTCTGC 119
Query 172 TTCTCCTCTCGGCACTCGTCAACAGGTAATTGGGATAAATGGGCAATTTCCTGGTCCGAT 231
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 TTCTCCTTTCGGCACTCGTCAACAGGTAATTGGGATAAATGGGCAATTTCCTGGTCCGAT 179
Query 232 TCTAAACGTAACTACGAATTGGAATGTTGTTATGAATGTGAAGAATAATCTTGATGAGCC 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCTAAACGTAACTACGAATTGGAATGTTGTTATGAATGTGAAGAATAATCTTGATGAGCC 239
Query 292 ATTGCTTCTTACATGGAATGGAATCCAACATAGGAAAAACTCATGGCAAGATGGTGTTTT 351
||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||
Sbjct 240 ATTGCTTCTTACATGGAATGGGATACAACATAGGAAAAATTCATGGCAAGATGGTGTTTT 299
Query 352 GGGAACTAATTGTCCAATTCCTTCTGGTTGGAATTGGACTTATGAGTTTCAAGTTAAAGA 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GGGAACTAATTGTCCAATTCCTTCTGGTTGGAATTGGACTTATGAGTTTCAAGTTAAAGA 359
Query 412 TCAGATTGGTAGTTTCTTTTATTTTCCTTCTACAAATTTTCAAAGAGCTTCTGGTGGTTA 471
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||
Sbjct 360 TCAGATTGGTAGTTTCTTTTATTTTCCATCTACAAATTTTCAGAGAGCTTCTGGTGGGTA 419
Query 472 TGGAGGGATTATTGTCAATAATCGCGCTATCATTCCGGTTCC-TTTCGCTCTTCCTGATG 530
||||||||||||| |||||||||| | |||||||||||||| ||| |||||||||||||
Sbjct 420 TGGAGGGATTATTATCAATAATCGAGAAATCATTCCGGTTCCATTT-GCTCTTCCTGATG 478
Query 531 GTGATGTTACTCTCTTTATCAGTGATTGGTATACTAAGAGCCATAAGAAGCTGAGGAAGG 590
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGATGTTACTCTCTTTATCAGTGATTGGTATACTAAGAGCCATAAGAAGCTGAGGAAGG 538
Query 591 ATGTTGAGAGTAAGAACGGCCTTCGACCTCCGGATGGTATTGTCATCAATGGATTTGGAC 650
|||||||||||||||| |||||| ||||||| ||||||||| | || |||||||||||||
Sbjct 539 ATGTTGAGAGTAAGAAAGGCCTTGGACCTCCAGATGGTATTCTTATAAATGGATTTGGAC 598
Query 651 CTTTTGC-T----TC-T-A---A---T-G-GT-A--GTCCTTTTGGGACCATAAACGTTG 692
||||| | | || | | | | | | | |||||||||||| ||||||||||
Sbjct 599 CTTTTCCTTACACTCGTGAGCTAGCTTCGAATAATTTTCCTTTTGGGACAATAAACGTTG 658
Query 693 AACCAGGACGAACATATCGTTTTCGTGTTCACAATAGTGGCATTGCGACCAGCTTGAATT 752
|||||||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||
Sbjct 659 AACCAGGACGAACATATCGTTTTCGTGTTCACAACAGTGGCATTGCAACCAGCCTGAATT 718
Query 753 TCAGAATACAGAATCATAACCTGCTTCTTGTTGAGACAGAAGGGTCATACACAATTCAGC 812
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 719 TCAGAATACAGAATCATAACCTGCTTCTTGTTGAGACAGAAGGGTCATACACAGTTCAGC 778
Query 813 AGAATTATACGAATATGGATATACATGTGGGTCAATCTTTCTCATTTCTGGTCACTATGG 872
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 779 AGAATTATACGAATATGGACATTCATGTGGGTCAATCTTTCTCATTTCTGGTCACTATGG 838
Query 873 ATCAGTCTGGTAGTAATGACTACTACATTGTTGCCAGCCCAAGGTTTGCTACATCCATCA 932
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 ATCAGTCTGGTAGTAATGACTACTACATTGTTGCCAGCCCAAGGTTTTCTACATCCATCA 898
Query 933 AAGCTAGTGGAGTCGCTGTCTTGCGCTACTCTAATTCCCAAGGACCCGCTTCAGGTCCAC 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 AAGCTAGTGGAGTCGCTGTCTTGCGCTACTCTAATTCCCAAGGACCCGCTTCAGGTCCAC 958
Query 993 TCCCTGATCCTCCTATTGAGTTGGACACATTTTTCTCAATGAACCAAGCACGATCCTTAA 1052
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 TCCCTGATCCTCCTATTGAGTTGGACACATTTTTCTCAATGAACCAAGCACGATCCTTAA 1018
Query 1053 GGTTGAATTTGTCATCTGGAGCTGCCCGTCCAAACCCGCAGGGATCTTTCAAATATGGCC 1112
|||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1019 GGTTGAATTTGTCAGCTGGAGCTGCCCGCCCAAACCCGCAGGGATCTTTCAAATATGGCC 1078
Query 1113 AGATTACAGTAACTGATGTGTATGTGATTGTCAACCGACCACCAGAGATGATAGA-GGGA 1171
||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 1079 AGATTACAGTAACTGATGTTTATGTGATTGTCAACCGATCACCAGAGATGATAGAAGGG- 1137
Query 1172 CGATTGCGTGCAACTCTTAATGGTATATCATACTTACCTCCTGCAACACCCCTAAAGCTT 1231
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1138 CGATTGCGTGCCACTCTTAATGGTATATCATACTTACCTCCTTCAACACCCCTAAAGCTT 1197
Query 1232 GCTCAGCAATACAACATCTCAGGGGTATACAAGTTGGATTTCCCAAAAAGGCCAATGAAT 1291
|||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||
Sbjct 1198 GCTCAGCAATACAACATCTCAGGGGTATACAAGTTGGATTTCCCCAAAAGACCGATGAAT 1257
Query 1292 AGGCATCCCAGGGTTGATACCTCAGTCATAAACGGCACGTTCAAGGGATTCGTGGAAATC 1351
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1258 AGGCACCCCAGGGTTGATACCTCTGTCATAAACGGCACGTTCAAGGGATTCGTGGAAATC 1317
Query 1352 ATATTTCAAAATAGTGACACCACTGTTAAGAGCTACCACTTGGATGGTTATGCATTTTTT 1411
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1318 ATATTTCAGAATAGTGACACCACTGTTAAGAGCTACCACTTGGATGGTTATGCATTTTTT 1377
Query 1412 GTTGTTGGGATGGACTTTGGTCTGTGGACAGAAAATAGCAGAAGCACATACAACAAGGGT 1471
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1378 GTTGTTGGGATGGACTTTGGTCTGTGGACAGAAAATAGCAGAAGCACATACAACAAGGGG 1437
Query 1472 GATGCAGTTGCTCGATCTACTACGCAGGTGTTTCCTGGTGCATGGACGGCCGTCTTGGTT 1531
||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1438 GATGCAGTTGCTCGATCTACTACGCAGGTGTTTCCTGGTTCATGGACGGCCATCTTGGTT 1497
Query 1532 TCTTTGGACAATGCTGGCATGTGGAACCTTCGAATAGACAATCTAGCCTCATGGTATCTT 1591
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1498 TCTTTGGACAATGCTGGCATGTGGAACCTTCGAATAGACAATCTCGCCTCATGGTATCTG 1557
Query 1592 GGCCAAGAACTATACTTGAGTGTGGTTAATCCAGAGATTGACATTGACTCATCTGAGAAT 1651
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 1558 GGCCAAGAACTATACTTGAGTGTGGTTAATCCAGAGATTGACAGTGACTCGTCTGAGAAT 1617
Query 1652 TCCGTTCCTAAAAACTCTATATATTGTGGTCGGCTCTCACCATTACAAAA 1701
||||||||| | ||| | ||||||||||||||||||||||||||||||||
Sbjct 1618 TCCGTTCCTGACAACACCATATATTGTGGTCGGCTCTCACCATTACAAAA 1667
> Ahg943148 jgi|Araly1|943148|scaffold_603692.1
Length=1806
Score = 172 bits (93), Expect = 7e-42
Identities = 285/375 (76%), Gaps = 24/375 (6%)
Strand=Plus/Plus
Query 155 GTCTCTTACCTCT-CTGCTTCTCCTCTCGGCACTCGTCAACAGGTAATTGGGATAAATGG 213
||||| ||| | | |||||||||| || || || ||||||||| |||| |||||| |
Sbjct 113 GTCTCCTACAT-TACTGCTTCTCCACTTGGTGTTCCTCAACAGGTCATTGCTATAAAT-G 170
Query 214 GCAA-TTTCCTGGTCCGATTCTAAACGTAACTACGAATTG-GAATGTTGTTATGAATGTG 271
| || ||||||||||| | | || || || || || || ||| | ||| | |||||
Sbjct 171 GAAAGTTTCCTGGTCCTACAATCAATGTTACAACCAA-TGAAAATCTGGTTGTTAATGT- 228
Query 272 AAG-AA-TAATCTTGATGAGCCA-TTGCTTCTTACA-TGGAATGGAATCCAACATAGGA- 326
|| || ||| | |||||| | || |||||| || ||||||||||||||||| | ||
Sbjct 229 CAGAAACAAAT-TGGATGAGGGACTT-CTTCTT-CATTGGAATGGAATCCAACAGA-GAC 284
Query 327 AAAACTCATGGCAAGATGGTGTTTTGGGAACTAATTGTCCAATTCCTTC-TGGTTGGAAT 385
|||||||||||||| ||||| ||||| |||||||| |||||| | | ||||||
Sbjct 285 GTGTTTCATGGCAAGATGGAGTTTTAGGAACCAATTGTCCTATTCCTCCAAAG-TGGAAT 343
Query 386 TGGACTTATGAGTTTCAAGTTAAAGATCAGATTGGTAGTTTCTTTTATTTTCCTTCTA-C 444
||||||||||||||||||||||| || || ||||| |||||||| || ||||||||| |
Sbjct 344 TGGACTTATGAGTTTCAAGTTAAGGACCAAATTGGGAGTTTCTTCTACTTTCCTTCTCTC 403
Query 445 AAATTTTCA-AAGAGCTTCTGGTGGTTATGGAGGGATT-ATTGTCAATAATCGCGCTATC 502
| ||| || || |||||||||||||| ||| || ||||||||| | | || ||
Sbjct 404 CA-TTTCCAGAA-AGCTTCTGGTGGTTTTGGCTCC-TTCATTGTCAATCCTAGAGCGATT 460
Query 503 ATTCCGGTTCCTTTC 517
||||| || ||||||
Sbjct 461 ATTCCAGTCCCTTTC 475
> Ahg918479 jgi|Araly1|918479|Al_scaffold_0008_3230
Length=1632
Score = 76.8 bits (41), Expect = 5e-13
Identities = 73/88 (83%), Gaps = 4/88 (5%)
Strand=Plus/Plus
Query 281 CTTGATGAGCCATTGCTTCTT-ACATGGAATGGAATCCAA-CATAGGAAAAACTCATGGC 338
||||| |||| || | |||| || |||||||| || || || ||||| ||||||||||
Sbjct 244 CTTGACCAGCC-TTTCCTCTTGACCTGGAATGGGAT-TAAGCAGAGGAAGAACTCATGGC 301
Query 339 AAGATGGTGTTTTGGGAACTAATTGTCC 366
||||||||||||||||||| || |||||
Sbjct 302 AAGATGGTGTTTTGGGAACAAACTGTCC 329
> Ahg492307 jgi|Araly1|492307|fgenesh2_kg.7__1740__AT4G25240.1
Length=2097
Score = 71.3 bits (38), Expect = 2e-11
Identities = 57/66 (86%), Gaps = 2/66 (3%)
Strand=Plus/Plus
Query 1380 AGAGCTACCACT-TGGATGGTTATGCATTTTTTGTTGTTGGGATGGACTTTGGTCTGTGG 1438
|||||| ||| | | ||||| ||| ||||||||||||||||||||||||||||| | |||
Sbjct 1469 AGAGCTTCCA-TGTTGATGGATATTCATTTTTTGTTGTTGGGATGGACTTTGGTATCTGG 1527
Query 1439 ACAGAA 1444
|||||
Sbjct 1528 TCAGAA 1533
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72066743540
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5