BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48470.1
Length=1495
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494908 jgi|Araly1|494908|fgenesh2_kg.8__724__AT5G48470.1 2148 0.0
> Ahg494908 jgi|Araly1|494908|fgenesh2_kg.8__724__AT5G48470.1
Length=1406
Score = 2148 bits (1163), Expect = 0.0
Identities = 1330/1410 (94%), Gaps = 13/1410 (1%)
Strand=Plus/Plus
Query 9 ttCCTTTGCATAAACCCAAAACCTCAAACTTTTTGAATCCGAAACGAGAAAACAAACTAT 68
||||||||| |||||||||||||||||| |||||||||||||| |||||| ||||||||
Sbjct 1 TTCCTTTGCTTAAACCCAAAACCTCAAAAATTTTGAATCCGAAAGGAGAAATCAAACTAT 60
Query 69 GTTACAGTCCATTCATCTTCGTTTTTCCTCCACACCATCACCTTCTAAAAGAGAATCTCT 128
|||||| || |||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 61 GTTACAATCAATTCATCTTCCTTTTTCCTCCACACCATCACCTTCTCAAAGAGAATCTCT 120
Query 129 CATAATTCCATCGGTTATTTGCTCATTTCCTTTCACCTCTTCTTCGTTCCGTCCAAAGCA 188
|||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 121 GATAATTCCATCGATTATTTGCTCATTTCCTTTCTCCTCTTCTTCGTTCCGTCCAAAACA 180
Query 189 AACCCAGAAACTGAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGAGGTGGATA 248
|||||||||| | |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 AACCCAGAAATTAAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGTGGTGGATA 240
Query 249 CACCGATGAAGAATTGTTCGAAAGATACGGAACTCAGCAAAATCAAACTAATGTCAAAGA 308
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||
Sbjct 241 TACCGATGAAGAATTGTTCGAAAGATACGGAACCCAGCAAAATCAAACTAATGTCGAAGA 300
Query 309 TAAATTAGATCCAGCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGT 368
||| ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TAAGTTAAACCCATCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGT 360
Query 369 TCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGT 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGT 420
Query 429 TGCTGTAGAATTGGCTGCACAAGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGG 488
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 TGCTGTAGAATTGGCTGCACAGGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGG 480
Query 489 GTTTATGATGGCTCTTGATTACATGATCCAACTTGCAGACAAAGACCAAGACGAGAAGAG 548
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 481 GTTTATGATGGCTCTTGATTACATGATCCAACTCGCCGACAAAGACCAAGACGATAAGAG 540
Query 549 AAAGTCTTTACTAGAGGTCGTCAAGGAGACTGTCTTATCTCATCTCACCAAGAAATGCCC 608
|||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||
Sbjct 541 AAAGTCTTTACTAGAGGTTGTCAAGGAGACTGTCTTATCTCATCTCACTAAAAAATGCCC 600
Query 609 TCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCGAAAAAGGAAAGTAGACATGA 668
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 601 TCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCTAAAAAGGAAAGTAGACATGA 660
Query 669 GCTTCTGCGTAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACT 728
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 GCTGCTGCGGAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACT 720
Query 729 TCATATACCCGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGAC 788
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCATATACCTGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGAC 780
Query 789 TATGGAAACAAGGCCAGCTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAG 848
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TATGGAAACAAGGCCAGTTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAG 840
Query 849 AGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTT 908
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTT 900
Query 909 CACTACTCTTCCTGAATCAGAGGTGAATTTCTTAGCCAAATTGGTAGCTTTGAAACCTGG 968
|||||||||||||||||||||||||||||||||| |||||||||| ||| | ||||||||
Sbjct 901 CACTACTCTTCCTGAATCAGAGGTGAATTTCTTAACCAAATTGGTTGCTCTCAAACCTGG 960
Query 969 AAAGACTGTGCAGCAGATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGCGCAGATAA 1028
||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 961 AAAGACTGTGCAGCAAATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGTGCAGATGA 1020
Query 1029 TCTTAGCAAAGAAGACGATTCTTCTACCGAAGGAAGAAA-ACCAAGTGG-ATTAAATGGA 1086
|||||||||||||||||||||||||||| |||||| ||| || |||||| || |||||||
Sbjct 1021 TCTTAGCAAAGAAGACGATTCTTCTACCCAAGGAA-AAAGACAAAGTGGGAT-AAATGGA 1078
Query 1087 AGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACT 1146
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1079 AGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAGACT 1138
Query 1147 GTCACAAAGGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT 1206
||||||||||| ||||||||||||||||| ||||||||||| || |||||||||||||||
Sbjct 1139 GTCACAAAGGTTCTGGGAAGTATATACTCAGGTAATGCCTCTGGTATAACAGCACAACAT 1198
Query 1207 CTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTTGAAGAAATCGCTTATTAGTAATAT 1266
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 1199 CTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTCGAAGAAATCGCGTATTAGTAGTAT 1258
Query 1267 CTT---TTGTTACATCAAGAAAGACTCGCAGGTAGAGATTGCGTCCT-GAAATAATCTTG 1322
|| |||| ||||||||| ||| | | |||||||||||||||||| ||| |||| | |
Sbjct 1259 -TTACCTTGTCACATCAAGAGAGATTTGAAGGTAGAGATTGCGTCCTTGAA-TAATATAG 1316
Query 1323 ATCGGTATATA-ATTTGTAATTTGGTTGGTTGATATGACATATAATGTCTCTCTACTAAA 1381
|||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1317 TTCGGTATATATAATTGTAATTTGGTTGGTTGATATGACAAATAATGTCTCTCTACTATA 1376
Query 1382 -CTATGC-ACATCCATTAAACCTCAAAAGT 1409
| || | | |||||||||| |||||||||
Sbjct 1377 TCCATACCATATCCATTAAAGCTCAAAAGT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55954569905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5