BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48470.1 Length=1495 Score E Sequences producing significant alignments: (Bits) Value Ahg494908 jgi|Araly1|494908|fgenesh2_kg.8__724__AT5G48470.1 2148 0.0 > Ahg494908 jgi|Araly1|494908|fgenesh2_kg.8__724__AT5G48470.1 Length=1406 Score = 2148 bits (1163), Expect = 0.0 Identities = 1330/1410 (94%), Gaps = 13/1410 (1%) Strand=Plus/Plus Query 9 ttCCTTTGCATAAACCCAAAACCTCAAACTTTTTGAATCCGAAACGAGAAAACAAACTAT 68 ||||||||| |||||||||||||||||| |||||||||||||| |||||| |||||||| Sbjct 1 TTCCTTTGCTTAAACCCAAAACCTCAAAAATTTTGAATCCGAAAGGAGAAATCAAACTAT 60 Query 69 GTTACAGTCCATTCATCTTCGTTTTTCCTCCACACCATCACCTTCTAAAAGAGAATCTCT 128 |||||| || |||||||||| ||||||||||||||||||||||||| ||||||||||||| Sbjct 61 GTTACAATCAATTCATCTTCCTTTTTCCTCCACACCATCACCTTCTCAAAGAGAATCTCT 120 Query 129 CATAATTCCATCGGTTATTTGCTCATTTCCTTTCACCTCTTCTTCGTTCCGTCCAAAGCA 188 |||||||||||| |||||||||||||||||||| |||||||||||||||||||||| || Sbjct 121 GATAATTCCATCGATTATTTGCTCATTTCCTTTCTCCTCTTCTTCGTTCCGTCCAAAACA 180 Query 189 AACCCAGAAACTGAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGAGGTGGATA 248 |||||||||| | |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 181 AACCCAGAAATTAAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGTGGTGGATA 240 Query 249 CACCGATGAAGAATTGTTCGAAAGATACGGAACTCAGCAAAATCAAACTAATGTCAAAGA 308 |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| Sbjct 241 TACCGATGAAGAATTGTTCGAAAGATACGGAACCCAGCAAAATCAAACTAATGTCGAAGA 300 Query 309 TAAATTAGATCCAGCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGT 368 ||| ||| | ||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 301 TAAGTTAAACCCATCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGT 360 Query 369 TCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGT 428 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGT 420 Query 429 TGCTGTAGAATTGGCTGCACAAGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGG 488 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 421 TGCTGTAGAATTGGCTGCACAGGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGG 480 Query 489 GTTTATGATGGCTCTTGATTACATGATCCAACTTGCAGACAAAGACCAAGACGAGAAGAG 548 ||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||| Sbjct 481 GTTTATGATGGCTCTTGATTACATGATCCAACTCGCCGACAAAGACCAAGACGATAAGAG 540 Query 549 AAAGTCTTTACTAGAGGTCGTCAAGGAGACTGTCTTATCTCATCTCACCAAGAAATGCCC 608 |||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||| Sbjct 541 AAAGTCTTTACTAGAGGTTGTCAAGGAGACTGTCTTATCTCATCTCACTAAAAAATGCCC 600 Query 609 TCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCGAAAAAGGAAAGTAGACATGA 668 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 601 TCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCTAAAAAGGAAAGTAGACATGA 660 Query 669 GCTTCTGCGTAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACT 728 ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 661 GCTGCTGCGGAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACT 720 Query 729 TCATATACCCGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGAC 788 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 721 TCATATACCTGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGAC 780 Query 789 TATGGAAACAAGGCCAGCTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAG 848 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 781 TATGGAAACAAGGCCAGTTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAG 840 Query 849 AGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTT 908 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 AGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTT 900 Query 909 CACTACTCTTCCTGAATCAGAGGTGAATTTCTTAGCCAAATTGGTAGCTTTGAAACCTGG 968 |||||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||| Sbjct 901 CACTACTCTTCCTGAATCAGAGGTGAATTTCTTAACCAAATTGGTTGCTCTCAAACCTGG 960 Query 969 AAAGACTGTGCAGCAGATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGCGCAGATAA 1028 ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | Sbjct 961 AAAGACTGTGCAGCAAATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGTGCAGATGA 1020 Query 1029 TCTTAGCAAAGAAGACGATTCTTCTACCGAAGGAAGAAA-ACCAAGTGG-ATTAAATGGA 1086 |||||||||||||||||||||||||||| |||||| ||| || |||||| || ||||||| Sbjct 1021 TCTTAGCAAAGAAGACGATTCTTCTACCCAAGGAA-AAAGACAAAGTGGGAT-AAATGGA 1078 Query 1087 AGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACT 1146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1079 AGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAGACT 1138 Query 1147 GTCACAAAGGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACAT 1206 ||||||||||| ||||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 1139 GTCACAAAGGTTCTGGGAAGTATATACTCAGGTAATGCCTCTGGTATAACAGCACAACAT 1198 Query 1207 CTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTTGAAGAAATCGCTTATTAGTAATAT 1266 ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 1199 CTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTCGAAGAAATCGCGTATTAGTAGTAT 1258 Query 1267 CTT---TTGTTACATCAAGAAAGACTCGCAGGTAGAGATTGCGTCCT-GAAATAATCTTG 1322 || |||| ||||||||| ||| | | |||||||||||||||||| ||| |||| | | Sbjct 1259 -TTACCTTGTCACATCAAGAGAGATTTGAAGGTAGAGATTGCGTCCTTGAA-TAATATAG 1316 Query 1323 ATCGGTATATA-ATTTGTAATTTGGTTGGTTGATATGACATATAATGTCTCTCTACTAAA 1381 |||||||||| | |||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 1317 TTCGGTATATATAATTGTAATTTGGTTGGTTGATATGACAAATAATGTCTCTCTACTATA 1376 Query 1382 -CTATGC-ACATCCATTAAACCTCAAAAGT 1409 | || | | |||||||||| ||||||||| Sbjct 1377 TCCATACCATATCCATTAAAGCTCAAAAGT 1406 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 55954569905 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5