BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48480.1
Length=871
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949261 jgi|Araly1|949261|scaffold_801148.1 815 0.0
> Ahg949261 jgi|Araly1|949261|scaffold_801148.1
Length=588
Score = 815 bits (441), Expect = 0.0
Identities = 540/586 (92%), Gaps = 13/586 (2%)
Strand=Plus/Plus
Query 81 TCATTTCTCTCTTAACCGTAAACGAATCTCTCTTCTCAAAGTTTTATTTTCTCTCTGCGA 140
||||||||||| ||||||||||||||||| ||||||| ||| || ||||||||||||||
Sbjct 4 TCATTTCTCTC-TAACCGTAAACGAATCTTTCTTCTCTAAG--TT-TTTTCTCTCTGCGA 59
Query 141 TGGCTCAAGAAGATGTTACTGCTGTTGCTACTAACGGTGCTGGTCCGGTGGAGACGCATC 200
|||||||||||||||||||| ||| |||||||||||| |||| |||||||||||||| ||
Sbjct 60 TGGCTCAAGAAGATGTTACTCCTGCTGCTACTAACGGCGCTGCTCCGGTGGAGACGCCTC 119
Query 201 TTGTCTTCACTGAGTTCAAGCAGATGTTGCTCGTTGAAGCTCAAAAGGTCGGTGACGCTG 260
|||||||||||||| |||||||||||||| |||||||||| ||||| |||||||||||||
Sbjct 120 TTGTCTTCACTGAGATCAAGCAGATGTTGATCGTTGAAGCACAAAAAGTCGGTGACGCTG 179
Query 261 TTACTTTCTACAAATCTGCTTTTGGTGCGATCGAGTCTGGTCATTCTCTTTACCCTAAGC 320
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 TCACTTTCTACAAATCTGCTTTTGGTGCGATCGAGTCTGGTCATTCTCTTTACCCTAAGC 239
Query 321 GTAAGCTTGACCAAGAGCTTCCTCATGTTCTCTCTTCTGAGCTTAATCTCGCTGGCTCTT 380
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 240 GTAAGCTTGACCAAGAGCTTCCTCATGTTCTCTCTTCTGAGCTTAACCTCGCTGGCTCTT 299
Query 381 CCTTCGTTGTTTGCGACGTTTCCTCTCTCCCTGGTTTTTCTACTGCGAAATCGGAAGGTT 440
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CCTTCGTTGTTTGCGACGTTTCCTCTCTCCCTGGTTTTTCTAATGCGAAATCGGAAGGTT 359
Query 441 CGGGAGTGACTTTTCTTCTCGGAACTAAGGATGCTGAAGCCGCCGTTGCGAAAGCTGTTG 500
|| |||||| | ||| ||||||||||| | | |||||||||||||||||||||||| |
Sbjct 360 CGAGAGTGAATCATCTCCTCGGAACTAATAACGTTGAAGCCGCCGTTGCGAAAGCTGTCG 419
Query 501 ACGCCGGAGCTGTGAAAGTGGAGGTTACGGAGGCAGAAGTTGAACTGGGATTCAAAGGAA 560
| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 420 ATGCCGGAGCTGTGAAAGTGGAGGTTACGGAGGCTGAAGTTGAACTGGGATTCAAAGGAA 479
Query 561 AAGTTACGGATCCTTTTGGTGTCACTTGGATCTTCGCGGAGAAGAAGACCGTGA---TC- 616
|||| ||||||||||||||||||||||||||||| | |||||||||||||| || ||
Sbjct 480 AAGTCACGGATCCTTTTGGTGTCACTTGGATCTTTGAGGAGAAGAAGACCGAGAACGTCG 539
Query 617 ---AC--CGACGAGAACAAAGAGGTTTAGAATCTGTCGTCGGATCT 657
| ||||||||||||||||||||| || ||||||||||||||
Sbjct 540 TTGAGAACGACGAGAACAAAGAGGTTTAAAAACTGTCGTCGGATCT 585
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32251987782
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5