BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48485.1

Length=571
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg949262 jgi|Araly1|949262|scaffold_801149.1                        438    2e-122


> Ahg949262 jgi|Araly1|949262|scaffold_801149.1
Length=424

 Score =  438 bits (237),  Expect = 2e-122
 Identities = 358/413 (87%), Gaps = 22/413 (5%)
 Strand=Plus/Plus

Query  143  CAAACATATAGAAAAAGAGAGAGGAGGATAATAATATGGCGAGCAAGAAAG-CAGCTATG  201
            |||||||| | ||||||| |||||||| | | || |||||||||||| ||| | ||||||
Sbjct  1    CAAACATACATAAAAAGAAAGAGGAGGCT-A-AA-ATGGCGAGCAAG-AAGACGGCTATG  56

Query  202  GTTATGATGGCGATGATCGT-G-A-TAATGGCTATGTTGGTCGATACATCAGTAGCGATA  258
            | |||||||| ||||||||| | | | ||||||||||| |||||||  ||||| ||||| 
Sbjct  57   GCTATGATGGTGATGATCGTGGTAGTGATGGCTATGTTAGTCGATAGGTCAGTTGCGATT  116

Query  259  GATCTCTGCGGCATGAGCCAGGATGAGTTGAATGAGTGCAAACCAGCGGTTAGCAAGGAG  318
            || ||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||| 
Sbjct  117  GACCTCTGTGGCATGACCCAAGATGAGTTGAATGAGTGCAAACCAGCGGTTAGCAAGGAA  176

Query  319  AATCCGACGAGCCCATCACAGCCTTGCTGCACCGCTCTGCAACACGCTGATTTTGCATGT  378
            ||||| |||||||||||||||||||||||| ||||||| |||||||| |||||  | |||
Sbjct  177  AATCCAACGAGCCCATCACAGCCTTGCTGCTCCGCTCTACAACACGCCGATTTCACCTGT  236

Query  379  CTTTGTGGTTACAAGAACTCTCCATGGCTCGGTTCTTTCGGTGTTGATCCTGAACTCGCT  438
            |||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  237  CTTTGTGGCTACAAAAACTCTCCATGGCTCGGTTCTTTCGGTGTTGATCCCGAACTCGCT  296

Query  439  TCTGCTCTCCCCAAACAGTGTGGTCTAGCCAACGCCCCAACTTGTTAAA-A-GACTCTG-  495
            |||| |||||||||||||||||| ||||||||||||||||||||||||| | | || || 
Sbjct  297  TCTGGTCTCCCCAAACAGTGTGGCCTAGCCAACGCCCCAACTTGTTAAATAAG-CT-TGG  354

Query  496  TATACGTGTGTTTATGTTTTTTATTACTCCTATTCTAAATATCGGATGTTATT  548
            | |  ||||||  ||||  ||     |||||||||||||||||||||||||||
Sbjct  355  TTT--GTGTGT--ATGTAGTT-----CTCCTATTCTAAATATCGGATGTTATT  398



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20871107183


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5