BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48490.1

Length=447
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg494910 jgi|Araly1|494910|fgenesh2_kg.8__726__AT5G48490.1          518    2e-146


> Ahg494910 jgi|Araly1|494910|fgenesh2_kg.8__726__AT5G48490.1
Length=361

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 331/356 (93%), Gaps = 2/356 (1%)
 Strand=Plus/Plus

Query  1    AACACCACAAACACAACAAATATATAAAAAATAAAGAGGATAAAATGACAAGCAAGAAGG  60
            ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||  
Sbjct  1    AACACCACAAACACAACTAATATATAAAAAATAAAGAGGATAAAATGACAAGCAAGAATA  60

Query  61   TGGCAATTATGGTGATTGTAATGGTGATGGCTAGTTTAGTCGTTGAGAGGTCAGTGGCGA  120
            |||| |||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct  61   TGGCTATTATGGTGATTGTAATGGTGATGGCTAGTTTAGTCATCGAGAGGTCAGTGGCGA  120

Query  121  TTGACCTTTGTGGCATGACTCAGGCAGAGTTGAATGAATGCTTACCAGCGGTGAGCAAGA  180
            |||||||||||||||||||||| || ||||| ||||| ||||||||||||||||||||||
Sbjct  121  TTGACCTTTGTGGCATGACTCAAGCTGAGTTAAATGAGTGCTTACCAGCGGTGAGCAAGA  180

Query  181  ATAACCCGACGAGCCCATCGTTA-CTTTGTTGTAACGCTCTGAAACATGCTGACTACACT  239
            ||||||| | |||||||||   | |||||||| |||||||| ||||||||||||||||||
Sbjct  181  ATAACCCAAAGAGCCCATC-ACAGCTTTGTTGCAACGCTCTAAAACATGCTGACTACACT  239

Query  240  TGTCTTTGTGGCTACAAAAACTCTCCGTGGCTCGGTTCTTTTGGTGTAGATCCCAAGCTC  299
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct  240  TGTCTTTGTGGCTACAAAAACTCTCCGTGGCTCGGTTCTTTCGGTGTAGATCCCAAGCTC  299

Query  300  GCTTCTAGTCTCCCTAAAGAGTGTGACCTAACCAACGCCCCAACTTGTTAAGCATT  355
            |||||  ||||||||||||| ||||||||| |||| |||||| |||||||||||||
Sbjct  300  GCTTCCGGTCTCCCTAAAGAATGTGACCTAGCCAATGCCCCAGCTTGTTAAGCATT  355



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16139814147


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5