BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48500.1
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494911 jgi|Araly1|494911|fgenesh2_kg.8__727__AT5G48500.1 1310 0.0
> Ahg494911 jgi|Araly1|494911|fgenesh2_kg.8__727__AT5G48500.1
Length=948
Score = 1310 bits (709), Expect = 0.0
Identities = 889/970 (92%), Gaps = 36/970 (4%)
Strand=Plus/Plus
Query 1 ACCCTACACTATATTTTTGAAAACACCACTCTATGCTCAGAGACACACAGTCCCTCACTA 60
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |
Sbjct 1 ACCCTACACTATATTTTTGAAAACACCACTCTATGCTCAGAG----ACA------CAC-A 49
Query 61 CTCTTTCTCTATCTCCTACAAGTAGACTTTAAGACAACTTTTGTCTCAGTGTTGAGTAAT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 -----TCTCTATCTCCTACAAGTAGACTTTAAGACAACTTTTGTCTCAGTGTTGAGTAAT 104
Query 121 GTAAAATACCCATCTGGTTATTTATTACGCATAGAtctctctct-tctctctttctctAT 179
|||||||||||||||||| ||||| || || | |||||| ||| |||||| ||||||||
Sbjct 105 GTAAAATACCCATCTGGTCATTTAATAAACACA-ATCTCTTTCTCTCTCTCATTCTCTAT 163
Query 180 TTAGATTACTTAAAGCAGAGAGGTCCGA-ACATCATCAATCAAACCCATTCACAACTACT 238
|||||| ||||||||||||||| ||| | |||||||||||||||| |||| || | |||
Sbjct 164 TTAGATAACTTAAAGCAGAGAGATCC-ATACATCATCAATCAAACACATT--CATC-ACT 219
Query 239 ACGACAATGGACTACGAATACGGAGGAGGAGAGTACTGTCGGAGAGGACACGTGCCAGCT 298
|| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 220 ACTACAATGGACTACGAATACGGAGGAGGAGAGTACTGTCGGAGAGGACACGTACCAGCT 279
Query 299 TTTGGAAGCTGGGATTGGAACGACGCCGTTCCATTCACTCAGTGTTTCGAGACAGCAACA 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 280 TTTGGAAGCTGGGATTGGAACGACGCCGTTCCATTCACTCAGTGTTTCGAGACAGCAACT 339
Query 359 ACTCAACAACCAGCTTTTCTTCACTATGCTTCTTACCCTCAAGATCGTGATCTTTACCTC 418
||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 340 ACTCAACAACCTGCTTTTCTTCACTACGCTCCTTACCCTCAAGATCGTGATCTTTACCTC 399
Query 419 GCCGGTGATCTCTACGACAACCACCACCTTGTAGCTCCGGCCGTTATCATTGTCCCTCGT 478
||||| ||||||||||| || ||||||||||||||||| ||||| ||||| |||||||||
Sbjct 400 GCCGGAGATCTCTACGATAATCACCACCTTGTAGCTCCCGCCGTCATCATCGTCCCTCGT 459
Query 479 CGCCGGGCTAAAGTGGGTCAAGAACCAGCGGAGAAGAAGAGAAATGTGTCGAAGCAGCAA 538
|||||||||||||||||||||||||| | ||| |||||||||||||| || ||| || ||
Sbjct 460 CGCCGGGCTAAAGTGGGTCAAGAACCGGTGGAAAAGAAGAGAAATGTCTCCAAGGAG-AA 518
Query 539 -CACAACTATAAGACGGAGGCGCGTGAGTTTAACGCGCCGGTAAGCTGTCCAACACCGGT 597
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CCACAACTATAAGACGGAGGCGCGTGAGTTTAACGCGCCGGTAAGCTGTCCAACACCGGT 578
Query 598 TGTGAAGCGGAGGATGAAGGCACCAAAGCCTGTGGATGAAGACTTGTACAAAGTTTCCCC 657
|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 579 GGTGAAGCGGAGGATGAAGGCGCCAAAGCCTGTGGATGAAGACTTGTACAAAGTCTCCCC 638
Query 658 ACAACTTCTCTCAGTCAAATCCAAAAGGAAAAGAGGAGGAGGTGGGTTTGGGTGCATTTC 717
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 639 ACAACTTCTCTCAGTCAAATCCAAAAGGAAAAGAGGAGGAGGTGGATTTGGGTGCATTTC 698
Query 718 AAGGTGTTTTTTGCCAACACGGGTGCTTTGAAGAAACAAGCGTGAGAGACTTGAGTCAGA 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 AAGGTGTTTTTTGCCAACACGGGTGCTTTGAAGAAACAAGCGTGAGAGACTTGAGTCAGA 758
Query 778 AGAACACTTTGttttt-tttt-cttttctttttCTAATCCTATTATATATATCAAAAGAC 835
| ||||||||||||| |||| || |||||| ||||||||||||||||||||||||||||
Sbjct 759 ACTACACTTTGTTTTTCTTTTTCTCTTCTTTATCTAATCCTATTATATATATCAAAAGAC 818
Query 836 TATGCTTGTGAGAGTAT---GTATTTATG-A---ATGCGTAGGaaaaaaa-aaGATGAAT 887
||||||||||||||||| |||| ||| | |||||||||||||||| |||||||||
Sbjct 819 TATGCTTGTGAGAGTATTATGTATGTATTTATTTATGCGTAGGAAAAAAAGAAGATGAAT 878
Query 888 G-CTAAAAGATAGTAGACCAATGTAGCTTTTGCGAAAAGCTTAGCCATATTATATTAACT 946
|||||||||| ||||||||||||||||||| |||||||||||||||||| |||||| |
Sbjct 879 TTCTAAAAGATACTAGACCAATGTAGCTTTTGGGAAAAGCTTAGCCATATTGTATTAATT 938
Query 947 AAACTATAAA 956
|||||| |||
Sbjct 939 AAACTAAAAA 948
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36216771150
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5