BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48510.1 Length=675 Score E Sequences producing significant alignments: (Bits) Value Ahg916349 jgi|Araly1|916349|Al_scaffold_0008_1100 841 0.0 Ahg357056 jgi|Araly1|357056|fgenesh1_pg.C_scaffold_8000843 689 0.0 Ahg905861 jgi|Araly1|905861|Al_scaffold_0003_2989 547 3e-155 Ahg345842 jgi|Araly1|345842|fgenesh1_pg.C_scaffold_4002184 353 8e-97 > Ahg916349 jgi|Araly1|916349|Al_scaffold_0008_1100 Length=690 Score = 841 bits (455), Expect = 0.0 Identities = 612/684 (89%), Gaps = 26/684 (4%) Strand=Plus/Plus Query 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60 |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 ATGGCAACTCTAACTAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAAAA 60 Query 61 AAATGGCAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AAATGGAAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120 Query 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAATTAGAC 180 |||||||||||||||||||||||||||||||||||||||| ||| ||||| |||||||| Sbjct 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAGGAAGATGTTGGAATTAGAG 180 Query 181 GAG-TTCAAGACTTCGACTAAACATGTGGAAACAATTACTCTTTCAGAGATGAAACATGA 239 ||| || ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| || Sbjct 181 GAGGTT-AAGACTTCGACAAAACAAGTGGAAACAATCACTCTCTCAGATATGAAACAAGA 239 Query 240 AGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTTTCTGCCAACGT 299 |||||||||||| |||||||||||||||| |||||||||| ||||||||||||| ||||| Sbjct 240 AGAGTTAGAAGCGTTTGTTGAGTTTATATACAGTGATGGCACAATGCTTTCTGCTAACGT 299 Query 300 GAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATTCTGCATCTACG 359 ||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| || Sbjct 300 GAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAATACGAGATTATGCATCTTCG 359 Query 360 AGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCTCTTGACCTCCT 419 |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| Sbjct 360 AGACCTATGCAGAACCAAGCTTATATCTTCTCTGAGTTTGTCGAATTCTCTTGACCTCCT 419 Query 420 TGTGCTCGCTCAAATCCCTTTTGACAAAGTCCT-CAACGATGAAAG--TTTCAGTTATAT 476 || |||||| ||||||||||||||||||||||| || ||||| | | ||| |||||||| Sbjct 420 TGAGCTCGCCCAAATCCCTTTTGACAAAGTCCTTCA-CGATGCA-GCCTTT-AGTTATAT 476 Query 477 AAAAAATAATATAAGTA-CGATTGCTAGCTCTGATGAGTTCAAGTTGTTCGTCGCCGGTA 535 ||||| ||||||| || ||||||||||||||||||||||||| |||||||||||| ||| Sbjct 477 CAAAAAGAATATAA-TAACGATTGCTAGCTCTGATGAGTTCAAATTGTTCGTCGCCAGTA 535 Query 536 ACCCAAATCTTGCCGTGGAGATAATGAAGGTTTCTCTCATTACTCT-TACT--T-TACGC 591 ||||||||||| |||||||||||||||||| |||||| | ||| | ||| | || || Sbjct 536 ACCCAAATCTTTCCGTGGAGATAATGAAGGCTTCTCT--T-ACT-TGTACAGCTGTAAGC 591 Query 592 TGTTCCTC-CTGTGGTT-CAAACCATAGTCTTCA-AG-GTATGTACTGTTGTAATTGTTG 647 ||||| | |||||||| | | | ||| || || || | | | ||||||||||||| | Sbjct 592 TGTTC-TAACTGTGGTTACTA-CAATAATCCTCTTAGTGGAAG--CTGTTGTAATTGTGG 647 Query 648 TCGCTACGGTACTCTTCGTTTGAT 671 ||||| |||||||||||||| ||| Sbjct 648 TCGCTTCGGTACTCTTCGTTGGAT 671 > Ahg357056 jgi|Araly1|357056|fgenesh1_pg.C_scaffold_8000843 Length=642 Score = 689 bits (373), Expect = 0.0 Identities = 513/577 (89%), Gaps = 23/577 (4%) Strand=Plus/Plus Query 109 TCAGCTATCTCTGCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATG 168 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| Sbjct 79 TCAGCTATCTCTGCCCACAAACTTATTCTGGCATCAAGATCGGAGGTGTTTAAGAAGATG 138 Query 169 TTCGAATTAGACGAGTTCAAGACTTCGACTAAACATGTGGAAACAATTACTCTTTCAGAG 228 || |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| Sbjct 139 TTGGAATTAGACGAGTTCAAGACTTCGACTAAACATGTGGAAACAATCACTCTCTCGGAG 198 Query 229 ATGAAACATGAAGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTT 288 |||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |||| Sbjct 199 ATGAAACAAGAAGAGTTAGAAGCTTTTGTTGAGTTTATTTACAGTGATGGCTCAAAGCTT 258 Query 289 TCTGCCAACGTGAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATT 348 |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||| Sbjct 259 TCTGCCAACGTGAAACAACATGCTCGGTCACTCTATCTTGCGGCTGATAAATACGAGATT 318 Query 349 CTGCATCTACGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCT 408 ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||| Sbjct 319 ATGCATCTACGAGACCTATGCAGAGCCGAGCTTATATCTTCTCTGAGTTTCTCGAATTCT 378 Query 409 CTTGACCTCCTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCT-CAACGATGAAAG--T 465 |||||| |||||| |||||| ||||||||||||||||||||||| || ||||| | | | Sbjct 379 CTTGACATCCTTGAGCTCGCGCAAATCCCTTTTGACAAAGTCCTTCA-CGATGCA-GCCT 436 Query 466 TTCAGTTATATAAAAAATAATATAAGTACGATTGCTAGCTCTGATGAGTTCAAGTTGTTC 525 || |||| ||| ||||| ||| ||| ||||||| ||||||||||||||||||||||||| Sbjct 437 TT-AGTTTTATCAAAAAGAATTTAAAAACGATTGATAGCTCTGATGAGTTCAAGTTGTTC 495 Query 526 GTCGCCGGTAACCCAAATCTTGCCGTGGAGATAATGAAGGTTTCTCTCATTACTCT-TAC 584 ||||| |||||||||||||||||||||||||| |||||| |||||| | ||| | ||| Sbjct 496 ATCGCCAGTAACCCAAATCTTGCCGTGGAGATAGTGAAGGCTTCTCT--T-ACT-TGTAC 551 Query 585 TTTACGCTGTTCCTCCT-GTGGTT-CAAACCATAGTCTTC--AA-GGTATGTACTGTTGT 639 |||| ||||||| | | |||||| ||| | ||| || || || || | | ||||||| Sbjct 552 TTTAGGCTGTTC-TAGTTGTGGTTACAA-CTATACTCCTCGTAATGGAA-G--CTGTTGT 606 Query 640 AATTGTTGTCGC-TACGGTACTCTTCGTTTGATCTAG 675 | |||| ||||| | |||||||||||||||||||||| Sbjct 607 AGTTGTGGTCGCAT-CGGTACTCTTCGTTTGATCTAG 642 Score = 119 bits (64), Expect = 3e-26 Identities = 68/70 (97%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60 |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| Sbjct 1 ATGGCAACTCCAACCAACAAAGAGCACTTCTCCGGTGGACTTGCAAAGGTTTTGGCAGAA 60 Query 61 AAATGGCAAG 70 |||||||||| Sbjct 61 AAATGGCAAG 70 > Ahg905861 jgi|Araly1|905861|Al_scaffold_0003_2989 Length=669 Score = 547 bits (296), Expect = 3e-155 Identities = 489/580 (84%), Gaps = 22/580 (4%) Strand=Plus/Plus Query 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60 |||||||| | |||||||||||| |||||||| ||||||||||||||| | ||||||||| Sbjct 1 ATGGCAACACAAACCAACAAAGACCATTTCTCTGGTGGACTTGCAAAGATCTTGGCAGAA 60 Query 61 AAATGGCAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120 |||||||||||||||||| ||| |||||| | ||||| |||||||||||| |||||| Sbjct 61 AAATGGCAAGTTGACGTACGGCTAAAGGCAGTGGATAGTCATGAGGGTTCAGTTATCTCA 120 Query 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAATTAGAC 180 ||||||||| ||||||||||||||||||||||||||||||| || ||| | |||| |||| Sbjct 121 GCCCACAAAGTTATTCTGGCATCAAGATCGGAGGTTTTTAAAAAGATGCTAGAATCAGAC 180 Query 181 GAGTTCAAGACTTC-GACTAAACATGTGGAAACAATTACTCTTTCAGAGATGAAACATGA 239 |||||||||| ||| | |||| | | ||||||| ||||| |||||||| ||||| || Sbjct 181 GAGTTCAAGAATTCAG-CTAA----G-G-AAACAATCACTCTCTCAGAGATAAAACAAGA 233 Query 240 AGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTTTCTGCCAACGT 299 ||||||||||||||||||||||||||||| |||||||| || ||||||||||| || || Sbjct 234 AGAGTTAGAAGCTTTTGTTGAGTTTATATATAGTGATGGTTCTATGCTTTCTGCGAAAGT 293 Query 300 GAAACAACATGC--TCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATTCTGCATCTA 357 ||| ||||| || | | | |||||||| ||||||||| || || |||||||| || ||| Sbjct 294 GAAGCAACACGCAATGG-T-ACTCTATCGTGCGGCTGACAAATACGAGATTCTCCAACTA 351 Query 358 CGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCTCTTGACCTC 417 || |||||||||||| ||||||||||||||||||||| || | ||||||||||||| || Sbjct 352 CGTGACCTATGCAGATCCGAGCTTATATCTTCTCTGAATTCGACGAATTCTCTTGACTTC 411 Query 418 CTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCTCAACGATGAAAGT--TTCAGTTATA 475 ||| |||||| |||| |||||||||||||||||||||||||| | | || ||||||| Sbjct 412 ATTGAGCTCGCCCAAACCCCTTTTGACAAAGTCCTCAACGATGCA-GCCCTT-AGTTATA 469 Query 476 TAAAAA-ATAATATAAGT-ACGATTGCTAGCTCTGATGAGTTCAAGTTGTTCGTCGCCGG 533 | |||| | ||| || | | ||||| ||||| |||| |||||||| ||||||| | Sbjct 470 TTAAAACA-AATG-AATTTATGATTGGTAGCTTTGATAAGTTCAAGCTGTTCGTTGATAA 527 Query 534 TAACCCAAATCTTGCCGTGGAGATAATGAAGG-TTTCTCT 572 | ||||||||||||||||||||||||||| || ||| ||| Sbjct 528 TTACCCAAATCTTGCCGTGGAGATAATGATGGCTTT-TCT 566 > Ahg345842 jgi|Araly1|345842|fgenesh1_pg.C_scaffold_4002184 Length=627 Score = 353 bits (191), Expect = 8e-97 Identities = 458/583 (79%), Gaps = 33/583 (6%) Strand=Plus/Plus Query 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCA-AAGGTTTTGGCA-G 58 |||||||| | || |||||||||| ||||| |||||| || | || | || | | | Sbjct 1 ATGGCAACACAAAGCAACAAAGAGGTTTTCTTAGGTGGA-TTTAAGAAACTCTT-GAATG 58 Query 59 AAAAATGGCAAGTTGACGTAATG-CTCAAGGCAAAGA-ATAGTGATGAGGGTTCAGCTAT 116 |||||||||||| || || | | |||||||| | || | ||||||||| || || | || Sbjct 59 AAAAATGGCAAGCCGATGT-ACGCCTCAAGGC-AGGAGACAGTGATGAGAGTGCATCCAT 116 Query 117 CTCTGCCCACAAACTTATTC-TGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAAT 175 || ||||||||| ||| || ||| | ||||||| ||||| |||||||| || || |||| Sbjct 117 CTTTGCCCACAAGCTT-GTCTTGGTAGCAAGATCAGAGGTGTTTAAGAACATATTGGAAT 175 Query 176 TAGACGAGTTCAAGACTTCGA-CTAAACAT-GTGGAAACAATTACTCTTTCAGAGATGAA 233 ||||||||||||| |||| | |||| | | || || ||| | ||||| || |||||||| Sbjct 176 CAGACGAGTTCAAGGCTTC-AGCTAAGC-TGGTTGAGACAGTCACTCTCTCGGAGATGAA 233 Query 234 ACATGAAG-AGTTAGAAGCTTTTGTTGAGTT--TATAT-GCAG-TGATGGCTCAATGCT- 287 ||| |||| || |||| ||||| || ||||| | ||| || | ||||||||| || | Sbjct 234 ACACGAAGAAG-TAGAGGCTTTAGTGGAGTTCATCTATAGC-GTTGATGGCTCCAT-TTG 290 Query 288 TTCTGCCAACGTGAA-ACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGA 346 |||||| | || || | |||||||||| ||||||| |||||| || || || ||||||| Sbjct 291 TTCTGCTAGTGTCAAGA-AACATGCTCGGTCACTCTTTCTTGCAGCCGACAAATATGAGA 349 Query 347 TTCTGCATCTACGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATT 406 ||| || |||| ||||||||||||||| |||||||||||| ||| ||| || || |||| Sbjct 350 TTCCGCTTCTAAGAGACCTATGCAGAAACGAGCTTATATCATCTTTGAATTCGTCGAATG 409 Query 407 CTCTTGA-CCTCCTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCTCAACGATGAAAG- 464 ||||| | | |||| | |||||| ||||||||||||||||||| |||||| |||| | Sbjct 410 CTCTT-AGCATCCTGGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATG-CCGC 467 Query 465 TTTCAGTTA-TATAAAAAATAATAT-AAGTACGATTGCTAGCTCTGATGAGTTCAAGTTG 522 ||||| || ||| || ||||| || ||| |||||||| | ||||||||||||| || Sbjct 468 TTTCA-CTACTATTTTAACCAATATGAA-TACCATTGCTAGTTGTGATGAGTTCAAGCTG 525 Query 523 TTCGTCGCCGGTAACCCAAATCTTGCCGTGGAGATAATGAAGG 565 || |||| | | |||||||||||||||||||||||||||||| Sbjct 526 TTTGTCGTCAATCACCCAAATCTTGCCGTGGAGATAATGAAGG 568 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24779896050 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5