BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48510.1
Length=675
Score E
Sequences producing significant alignments: (Bits) Value
Ahg916349 jgi|Araly1|916349|Al_scaffold_0008_1100 841 0.0
Ahg357056 jgi|Araly1|357056|fgenesh1_pg.C_scaffold_8000843 689 0.0
Ahg905861 jgi|Araly1|905861|Al_scaffold_0003_2989 547 3e-155
Ahg345842 jgi|Araly1|345842|fgenesh1_pg.C_scaffold_4002184 353 8e-97
> Ahg916349 jgi|Araly1|916349|Al_scaffold_0008_1100
Length=690
Score = 841 bits (455), Expect = 0.0
Identities = 612/684 (89%), Gaps = 26/684 (4%)
Strand=Plus/Plus
Query 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60
|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 ATGGCAACTCTAACTAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAAAA 60
Query 61 AAATGGCAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAATGGAAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120
Query 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAATTAGAC 180
|||||||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||
Sbjct 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAGGAAGATGTTGGAATTAGAG 180
Query 181 GAG-TTCAAGACTTCGACTAAACATGTGGAAACAATTACTCTTTCAGAGATGAAACATGA 239
||| || ||||||||||| ||||| ||||||||||| ||||| ||||| |||||||| ||
Sbjct 181 GAGGTT-AAGACTTCGACAAAACAAGTGGAAACAATCACTCTCTCAGATATGAAACAAGA 239
Query 240 AGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTTTCTGCCAACGT 299
|||||||||||| |||||||||||||||| |||||||||| ||||||||||||| |||||
Sbjct 240 AGAGTTAGAAGCGTTTGTTGAGTTTATATACAGTGATGGCACAATGCTTTCTGCTAACGT 299
Query 300 GAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATTCTGCATCTACG 359
||||||||||||||||||||||||||||||||||||||| || |||||| ||||||| ||
Sbjct 300 GAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAATACGAGATTATGCATCTTCG 359
Query 360 AGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCTCTTGACCTCCT 419
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 360 AGACCTATGCAGAACCAAGCTTATATCTTCTCTGAGTTTGTCGAATTCTCTTGACCTCCT 419
Query 420 TGTGCTCGCTCAAATCCCTTTTGACAAAGTCCT-CAACGATGAAAG--TTTCAGTTATAT 476
|| |||||| ||||||||||||||||||||||| || ||||| | | ||| ||||||||
Sbjct 420 TGAGCTCGCCCAAATCCCTTTTGACAAAGTCCTTCA-CGATGCA-GCCTTT-AGTTATAT 476
Query 477 AAAAAATAATATAAGTA-CGATTGCTAGCTCTGATGAGTTCAAGTTGTTCGTCGCCGGTA 535
||||| ||||||| || ||||||||||||||||||||||||| |||||||||||| |||
Sbjct 477 CAAAAAGAATATAA-TAACGATTGCTAGCTCTGATGAGTTCAAATTGTTCGTCGCCAGTA 535
Query 536 ACCCAAATCTTGCCGTGGAGATAATGAAGGTTTCTCTCATTACTCT-TACT--T-TACGC 591
||||||||||| |||||||||||||||||| |||||| | ||| | ||| | || ||
Sbjct 536 ACCCAAATCTTTCCGTGGAGATAATGAAGGCTTCTCT--T-ACT-TGTACAGCTGTAAGC 591
Query 592 TGTTCCTC-CTGTGGTT-CAAACCATAGTCTTCA-AG-GTATGTACTGTTGTAATTGTTG 647
||||| | |||||||| | | | ||| || || || | | | ||||||||||||| |
Sbjct 592 TGTTC-TAACTGTGGTTACTA-CAATAATCCTCTTAGTGGAAG--CTGTTGTAATTGTGG 647
Query 648 TCGCTACGGTACTCTTCGTTTGAT 671
||||| |||||||||||||| |||
Sbjct 648 TCGCTTCGGTACTCTTCGTTGGAT 671
> Ahg357056 jgi|Araly1|357056|fgenesh1_pg.C_scaffold_8000843
Length=642
Score = 689 bits (373), Expect = 0.0
Identities = 513/577 (89%), Gaps = 23/577 (4%)
Strand=Plus/Plus
Query 109 TCAGCTATCTCTGCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATG 168
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 79 TCAGCTATCTCTGCCCACAAACTTATTCTGGCATCAAGATCGGAGGTGTTTAAGAAGATG 138
Query 169 TTCGAATTAGACGAGTTCAAGACTTCGACTAAACATGTGGAAACAATTACTCTTTCAGAG 228
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| || |||
Sbjct 139 TTGGAATTAGACGAGTTCAAGACTTCGACTAAACATGTGGAAACAATCACTCTCTCGGAG 198
Query 229 ATGAAACATGAAGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTT 288
|||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||
Sbjct 199 ATGAAACAAGAAGAGTTAGAAGCTTTTGTTGAGTTTATTTACAGTGATGGCTCAAAGCTT 258
Query 289 TCTGCCAACGTGAAACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATT 348
|||||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||
Sbjct 259 TCTGCCAACGTGAAACAACATGCTCGGTCACTCTATCTTGCGGCTGATAAATACGAGATT 318
Query 349 CTGCATCTACGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCT 408
||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||
Sbjct 319 ATGCATCTACGAGACCTATGCAGAGCCGAGCTTATATCTTCTCTGAGTTTCTCGAATTCT 378
Query 409 CTTGACCTCCTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCT-CAACGATGAAAG--T 465
|||||| |||||| |||||| ||||||||||||||||||||||| || ||||| | | |
Sbjct 379 CTTGACATCCTTGAGCTCGCGCAAATCCCTTTTGACAAAGTCCTTCA-CGATGCA-GCCT 436
Query 466 TTCAGTTATATAAAAAATAATATAAGTACGATTGCTAGCTCTGATGAGTTCAAGTTGTTC 525
|| |||| ||| ||||| ||| ||| ||||||| |||||||||||||||||||||||||
Sbjct 437 TT-AGTTTTATCAAAAAGAATTTAAAAACGATTGATAGCTCTGATGAGTTCAAGTTGTTC 495
Query 526 GTCGCCGGTAACCCAAATCTTGCCGTGGAGATAATGAAGGTTTCTCTCATTACTCT-TAC 584
||||| |||||||||||||||||||||||||| |||||| |||||| | ||| | |||
Sbjct 496 ATCGCCAGTAACCCAAATCTTGCCGTGGAGATAGTGAAGGCTTCTCT--T-ACT-TGTAC 551
Query 585 TTTACGCTGTTCCTCCT-GTGGTT-CAAACCATAGTCTTC--AA-GGTATGTACTGTTGT 639
|||| ||||||| | | |||||| ||| | ||| || || || || | | |||||||
Sbjct 552 TTTAGGCTGTTC-TAGTTGTGGTTACAA-CTATACTCCTCGTAATGGAA-G--CTGTTGT 606
Query 640 AATTGTTGTCGC-TACGGTACTCTTCGTTTGATCTAG 675
| |||| ||||| | ||||||||||||||||||||||
Sbjct 607 AGTTGTGGTCGCAT-CGGTACTCTTCGTTTGATCTAG 642
Score = 119 bits (64), Expect = 3e-26
Identities = 68/70 (97%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCAACTCCAACCAACAAAGAGCACTTCTCCGGTGGACTTGCAAAGGTTTTGGCAGAA 60
Query 61 AAATGGCAAG 70
||||||||||
Sbjct 61 AAATGGCAAG 70
> Ahg905861 jgi|Araly1|905861|Al_scaffold_0003_2989
Length=669
Score = 547 bits (296), Expect = 3e-155
Identities = 489/580 (84%), Gaps = 22/580 (4%)
Strand=Plus/Plus
Query 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCAAAGGTTTTGGCAGAA 60
|||||||| | |||||||||||| |||||||| ||||||||||||||| | |||||||||
Sbjct 1 ATGGCAACACAAACCAACAAAGACCATTTCTCTGGTGGACTTGCAAAGATCTTGGCAGAA 60
Query 61 AAATGGCAAGTTGACGTAATGCTCAAGGCAAAGAATAGTGATGAGGGTTCAGCTATCTCT 120
|||||||||||||||||| ||| |||||| | ||||| |||||||||||| ||||||
Sbjct 61 AAATGGCAAGTTGACGTACGGCTAAAGGCAGTGGATAGTCATGAGGGTTCAGTTATCTCA 120
Query 121 GCCCACAAACTTATTCTGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAATTAGAC 180
||||||||| ||||||||||||||||||||||||||||||| || ||| | |||| ||||
Sbjct 121 GCCCACAAAGTTATTCTGGCATCAAGATCGGAGGTTTTTAAAAAGATGCTAGAATCAGAC 180
Query 181 GAGTTCAAGACTTC-GACTAAACATGTGGAAACAATTACTCTTTCAGAGATGAAACATGA 239
|||||||||| ||| | |||| | | ||||||| ||||| |||||||| ||||| ||
Sbjct 181 GAGTTCAAGAATTCAG-CTAA----G-G-AAACAATCACTCTCTCAGAGATAAAACAAGA 233
Query 240 AGAGTTAGAAGCTTTTGTTGAGTTTATATGCAGTGATGGCTCAATGCTTTCTGCCAACGT 299
||||||||||||||||||||||||||||| |||||||| || ||||||||||| || ||
Sbjct 234 AGAGTTAGAAGCTTTTGTTGAGTTTATATATAGTGATGGTTCTATGCTTTCTGCGAAAGT 293
Query 300 GAAACAACATGC--TCGCTCACTCTATCTTGCGGCTGATAAGTATGAGATTCTGCATCTA 357
||| ||||| || | | | |||||||| ||||||||| || || |||||||| || |||
Sbjct 294 GAAGCAACACGCAATGG-T-ACTCTATCGTGCGGCTGACAAATACGAGATTCTCCAACTA 351
Query 358 CGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATTCTCTTGACCTC 417
|| |||||||||||| ||||||||||||||||||||| || | ||||||||||||| ||
Sbjct 352 CGTGACCTATGCAGATCCGAGCTTATATCTTCTCTGAATTCGACGAATTCTCTTGACTTC 411
Query 418 CTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCTCAACGATGAAAGT--TTCAGTTATA 475
||| |||||| |||| |||||||||||||||||||||||||| | | || |||||||
Sbjct 412 ATTGAGCTCGCCCAAACCCCTTTTGACAAAGTCCTCAACGATGCA-GCCCTT-AGTTATA 469
Query 476 TAAAAA-ATAATATAAGT-ACGATTGCTAGCTCTGATGAGTTCAAGTTGTTCGTCGCCGG 533
| |||| | ||| || | | ||||| ||||| |||| |||||||| ||||||| |
Sbjct 470 TTAAAACA-AATG-AATTTATGATTGGTAGCTTTGATAAGTTCAAGCTGTTCGTTGATAA 527
Query 534 TAACCCAAATCTTGCCGTGGAGATAATGAAGG-TTTCTCT 572
| ||||||||||||||||||||||||||| || ||| |||
Sbjct 528 TTACCCAAATCTTGCCGTGGAGATAATGATGGCTTT-TCT 566
> Ahg345842 jgi|Araly1|345842|fgenesh1_pg.C_scaffold_4002184
Length=627
Score = 353 bits (191), Expect = 8e-97
Identities = 458/583 (79%), Gaps = 33/583 (6%)
Strand=Plus/Plus
Query 1 ATGGCAACTCCAACCAACAAAGAGCATTTCTCGGGTGGACTTGCA-AAGGTTTTGGCA-G 58
|||||||| | || |||||||||| ||||| |||||| || | || | || | | |
Sbjct 1 ATGGCAACACAAAGCAACAAAGAGGTTTTCTTAGGTGGA-TTTAAGAAACTCTT-GAATG 58
Query 59 AAAAATGGCAAGTTGACGTAATG-CTCAAGGCAAAGA-ATAGTGATGAGGGTTCAGCTAT 116
|||||||||||| || || | | |||||||| | || | ||||||||| || || | ||
Sbjct 59 AAAAATGGCAAGCCGATGT-ACGCCTCAAGGC-AGGAGACAGTGATGAGAGTGCATCCAT 116
Query 117 CTCTGCCCACAAACTTATTC-TGGCATCAAGATCGGAGGTTTTTAAGAATATGTTCGAAT 175
|| ||||||||| ||| || ||| | ||||||| ||||| |||||||| || || ||||
Sbjct 117 CTTTGCCCACAAGCTT-GTCTTGGTAGCAAGATCAGAGGTGTTTAAGAACATATTGGAAT 175
Query 176 TAGACGAGTTCAAGACTTCGA-CTAAACAT-GTGGAAACAATTACTCTTTCAGAGATGAA 233
||||||||||||| |||| | |||| | | || || ||| | ||||| || ||||||||
Sbjct 176 CAGACGAGTTCAAGGCTTC-AGCTAAGC-TGGTTGAGACAGTCACTCTCTCGGAGATGAA 233
Query 234 ACATGAAG-AGTTAGAAGCTTTTGTTGAGTT--TATAT-GCAG-TGATGGCTCAATGCT- 287
||| |||| || |||| ||||| || ||||| | ||| || | ||||||||| || |
Sbjct 234 ACACGAAGAAG-TAGAGGCTTTAGTGGAGTTCATCTATAGC-GTTGATGGCTCCAT-TTG 290
Query 288 TTCTGCCAACGTGAA-ACAACATGCTCGCTCACTCTATCTTGCGGCTGATAAGTATGAGA 346
|||||| | || || | |||||||||| ||||||| |||||| || || || |||||||
Sbjct 291 TTCTGCTAGTGTCAAGA-AACATGCTCGGTCACTCTTTCTTGCAGCCGACAAATATGAGA 349
Query 347 TTCTGCATCTACGAGACCTATGCAGAACCGAGCTTATATCTTCTCTGAGTTTGTTGAATT 406
||| || |||| ||||||||||||||| |||||||||||| ||| ||| || || ||||
Sbjct 350 TTCCGCTTCTAAGAGACCTATGCAGAAACGAGCTTATATCATCTTTGAATTCGTCGAATG 409
Query 407 CTCTTGA-CCTCCTTGTGCTCGCTCAAATCCCTTTTGACAAAGTCCTCAACGATGAAAG- 464
||||| | | |||| | |||||| ||||||||||||||||||| |||||| |||| |
Sbjct 410 CTCTT-AGCATCCTGGAGCTCGCCCAAATCCCTTTTGACAAAGCCCTCAATGATG-CCGC 467
Query 465 TTTCAGTTA-TATAAAAAATAATAT-AAGTACGATTGCTAGCTCTGATGAGTTCAAGTTG 522
||||| || ||| || ||||| || ||| |||||||| | ||||||||||||| ||
Sbjct 468 TTTCA-CTACTATTTTAACCAATATGAA-TACCATTGCTAGTTGTGATGAGTTCAAGCTG 525
Query 523 TTCGTCGCCGGTAACCCAAATCTTGCCGTGGAGATAATGAAGG 565
|| |||| | | ||||||||||||||||||||||||||||||
Sbjct 526 TTTGTCGTCAATCACCCAAATCTTGCCGTGGAGATAATGAAGG 568
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24779896050
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5