BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48520.1
Length=2337
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494914 jgi|Araly1|494914|fgenesh2_kg.8__730__AT5G48520.1 3360 0.0
> Ahg494914 jgi|Araly1|494914|fgenesh2_kg.8__730__AT5G48520.1
Length=2048
Score = 3360 bits (1819), Expect = 0.0
Identities = 1978/2054 (96%), Gaps = 13/2054 (1%)
Strand=Plus/Plus
Query 161 GAGGCAATCGCATAA-TTCCCACCGGCGATCGGAGATGAGCAGCGCGAGACTGTGCTCTC 219
|||||||||| |||| ||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1 GAGGCAATCGTATAATTTCCCACAGGCGATCGGAGATGAGCAGCGCGAGACTGTGCTCTC 60
Query 220 TTGTGGCGGAGCTAGGTTACGAAGGCGCCGGAAAATTGGATCCCGATAGCTTCGAATGGC 279
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 61 TTGTGGCGGAGCTAGGTTACGAAGGCGCCGGAAAATTGGATCCCGACAGCTTCGAGTGGC 120
Query 280 CGTTTCAGTACGACGATGCTCGACCTATCCTCGACTGGATCTGTTCCTCTCTTCGTCCTT 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 121 CGTTTCAGTACGACGATGCTCGACCTATCCTCGACTGGATCTGTTCCTCTCTTCGCCCCT 180
Query 340 CCAATGTCCTCTCTCTCGCCGAACTATCACTATATGAGCAATTTCAACGAGATGGGAAAC 399
||||||||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||
Sbjct 181 CCAATGTCCTCTCCCTCGCTGAACTATCCCTATATGAGCAATTTCAAAGAGATGGGAAAC 240
Query 400 TCTTAGAGGGCGATGATCTAGACCAGGCATATGATAGCATATCAGCATTTTCTTCCAGGA 459
|||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 241 TCTTAGAGGGTGACGATCTAGACCAGGCTTATGATAGCATATCAGCATTTTCTTCCAGGA 300
Query 460 GAAATAACCAGGAGGCCGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGAGATGCAA 519
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAAATAACCAGGAGGCGGTTTTTGGAGCAGAAGAAAGCATTAAAGAAGTAAGAGATGCAA 360
Query 520 CTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTAAGGCGGTTACAAACTC 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 CTTTGGCGCATAAGGCTGAAGCCTTAGAGTTGCAGAGGCAGCTAAGGCGGTTACAGACTC 420
Query 580 AATATGATTTACTCACTGGCCAATCTTCAGCTCTTATTCAAGGGAGACGTGCTCGAGTTG 639
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 421 AATATGATTTACTCACTGGCCAATCTTCAGCTCTGATTCAAGGGAGGCGTGCTCGAGTTG 480
Query 640 CTGCAACTTCTGCTGTCTCTGGACAGATAACAGCTATAGAAGACAGTTTATCTGCTCGAA 699
|||||||||||||||||||||||||||||||| ||||||||||||| | |||||| |||
Sbjct 481 CTGCAACTTCTGCTGTCTCTGGACAGATAACATCTATAGAAGACAGCCTGTCTGCTAGAA 540
Query 700 ATTTGCAGATGAATGGAGTTCTAGGAAGACTGGCTTCCACTTCTCAAGAGCTGGCGCATT 759
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ATTTGCAGATGAATGGAGTTCTAGGAAGATTGGCTTCCACTTCTCAAGAGCTGGCGCATT 600
Query 760 ATCATTCTGGCGAAGAGGATGGAATATACTTAGCATACTCCGATTTCCATGCCTACTTGG 819
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 601 ATCATTCTGGCGAAGAGGATGGAATATACTTAGCATACTCTGATTTCCATGCCTACTTGG 660
Query 820 CTGGAGATTCAGCCTGCACAAAGGAGCTAAATCAGTGGTTTGCTAAGCAGCTAGACACAG 879
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 661 CCGGAGATTCAGCCTGCACAAAGGAGCTAAATCAGTGGTTTGCTAAGCAACTAGATACAG 720
Query 880 GGCCATACCGTTTAGTTGCAGAGGAAGGAAAATCGAAATGCTCATGGGTCAGTCTTGATG 939
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGCCATACCGTTTAGTTGCAGAGGAAGGAAAATCGAAATGCTCATGGGTCAGTCTTGATG 780
Query 940 ATACATCTAACATGTTGCGAGATTTGGAAAAGTCACAGCATCAACGTGTAGCTGAACTCC 999
||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 781 ATACATCAAACATGTTGCGAGATTTGGAAAAGTCACAGCATCAACGCGTAGCTGAACTGC 840
Query 1000 AACGGCTTCGGTCCATCTTTGGAACAAGTGAGAGACAATGGATTGAAGCCCAGGTGGAGA 1059
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 841 AACGGCTTCGGTCCATCTTTGGAACAAGTGAGAGACAATGGATTGAAGCTCAGGTCGAGA 900
Query 1060 ATGCTAAGCAACAAGCTATTCTTTTGACACTCAAATCTCAAGTAACATCAGTGGAAGCTC 1119
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct 901 ATGCTAAGCAACAAGCTATTCTCTTGACGCTCAAATCTCAAGTAACATCAGTTGAAGCTC 960
Query 1120 ATATTCATTTTGATCTACATTCTCTGAGGAGAAAACATGCAGATCTAGTCGAAGAAATCT 1179
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 961 ATATTCATTTTGATCTACATTCTCTAAGGAGAAAACATGCAGATCTAGTCGAAGAAATCT 1020
Query 1180 CTACCCTTTATCAGAAAGAAGAAAAACTCTTATCTGAGACTATTCCCGAACTATGTTGGG 1239
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1021 CTACCCTTTATCAGAAAGAAGAAAAACTCTTATCTGAGACTATTCCCGAATTATGTTGGG 1080
Query 1240 AGCTCGCACAACTGCAGGACACCTATATCTTGCAAGGTGACTACGATCTAAAGGTCATGC 1299
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1081 AGCTCGCACAACTGCAGGACACCTATATCTTGCAAGGTGACTACGATCTAAAGGTGATGC 1140
Query 1300 GTCAAGAACTGTATATTAGTAAACAGAAAGTGTTCATCAATCATCTGGTTAATCAGCTAG 1359
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1141 GTCAAGAGCTGTATATTAGTAAGCAGAAAGTGTTCATCAATCATCTGGTTAATCAGCTAG 1200
Query 1360 CAAGACACCAGTTCTTAAAATTAGCATGTCAGCTAGAAAAGAAAAACATGCTTGGAGCAT 1419
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CAAGACACCAGTTCTTGAAATTAGCATGTCAGCTAGAAAAGAAAAACATGCTTGGAGCAT 1260
Query 1420 TCTCTCTGCTAAAAGTAATTGAATCCGAACTTCAGGGCTACCTCTCCGCCACAAGAAGCC 1479
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1261 TCTCTCTGCTAAAAGTAATTGAATCCGAACTTCAGGGTTACCTCTCCGCCACAAGAAGCC 1320
Query 1480 GTGTGGGGCGATGTTCGGCACTGATACAAGCTGCATCTGATGTGCAAGAACAAGGAGCAG 1539
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1321 GTGTGGGGCGGTGTTCGGCACTGATCCAAGCTGCATCTGATGTGCAAGAACAAGGAGCAG 1380
Query 1540 TAGATGACCGTGACAGCTTTTTACATGGAGTTAGAGATCTCTTGAGCATTCACTCAAATA 1599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 TAGATGACCGTGACAGCTTTTTACATGGAGTTAGAGATCTCTTGAGCATTCACTCAAATA 1440
Query 1600 CCCAAGCCGGATTATCAACTTATGTCTCAGCTCCAGCCATCATTCAGCAGATAGTTGCTC 1659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCCAAGCCGGATTATCAACATATGTCTCAGCTCCAGCCATCATTCAGCAGATAGTTGCTC 1500
Query 1660 TTCAATCCGATCTGTCGTCTCTTCAGTCTGACCTCGAGAATTCCCTTCCAGATGACCGAA 1719
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TTCAATCGGATCTGTCGTCTCTTCAGTCTGACCTCGAGAATTCCCTTCCAGATGACCGAA 1560
Query 1720 ATAGATGCATTAATGAGCTGTGTACCCATATTCAGAATCT-GCAGCAACTGCTCTTTGCG 1778
| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 1561 ACAGATGCATTAATGAGCTGTGTACCCATATTCAGAA-CTTGCAGCAACTGCTCTTTGCG 1619
Query 1779 TCTTCAACTACGGCACAACCCATATTGACACCTTGGCCACTGATGAAAGAACTTGATGAA 1838
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1620 TCTTCAACTACGGCACAACCCATATTGACACCATGGCCACTGATGAAAGAACTTGATGAA 1679
Query 1839 ATGGGGAAAATCAACTCCAAACTCTCTACAGCAGTGGAAGAGGTGACGCTTGAGCACCGC 1898
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1680 ATGGGAAAAATCAACTCCAAACTCTCTACAGCGGTGGAAGAGGTGACGCTTGAGCACCGC 1739
Query 1899 AATAAAAGGGAGATTGTGAAGCATCACGCCAAGGACGTGGAACTTCAAAGGCGGGTATTT 1958
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1740 AATAAAAGGGAGATTGTGAAGCATCACGCCAAGGATGTGGAACTTCAAAGACGGGTATTT 1799
Query 1959 GTGGACTTTTTCTGCAACCCAGAGCGATTGAGAAACCAAGTGAGGGAACTCAATGCACTC 2018
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1800 GTGGACTTTTTCTGCAACCCAGAGCGATTGAGAAACCAAGTGAGGGAACTCAATGCGCTC 1859
Query 2019 GTTCGTGCTCGCCAAGCCTCATCATCGTAGGTTCTCACTTCTCACCATAAGTACATAGCA 2078
|||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||
Sbjct 1860 GTTCGTGCTCGCCAAGCCTCATCATCGTAGGTCCACACCA-TCACCATAAGTACATAGCA 1918
Query 2079 CAAGTGATCTCTCTT-AGTTTTTTGTCATTTCACTTTGTGATTGTATTATCTAGTGGTTG 2137
||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1919 CAAGTGATCTCTCTTTAGTTTTTTGTCATTTCGCTTTGTGATTGTATTATCTAGTGTTTG 1978
Query 2138 ATTGATTTTACTTACTGCCCATCTTCTATTGTTTCTGAG-TTTCGTGGTTT-GT-T-GGG 2193
||||||||||||| ||| ||||||| | | |||||| || ||| ||||||| || | |||
Sbjct 1979 ATTGATTTTACTTTCTGTCCATCTT-T-T-GTTTCTAAGCTTT-GTGGTTTCGTGTTGGG 2034
Query 2194 GTTATTTGAGCTTT 2207
|||||||| |||||
Sbjct 2035 GTTATTTGTGCTTT 2048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88026556195
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5