BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48540.1
Length=957
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494916 jgi|Araly1|494916|fgenesh2_kg.8__732__AT5G48540.1 1454 0.0
Ahg925769 jgi|Araly1|925769|scaffold_201330.1 333 1e-90
> Ahg494916 jgi|Araly1|494916|fgenesh2_kg.8__732__AT5G48540.1
Length=924
Score = 1454 bits (787), Expect = 0.0
Identities = 881/927 (95%), Gaps = 4/927 (0%)
Strand=Plus/Plus
Query 32 TAATGAAGACATTAGTTGTGAAATGTTTCCTTCTATTGGCTCTTGTATGTAGCTGCAGAG 91
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1 TAATGAAGACATTAATTGTGAAATGTTCCCTTCTATTGGCTCTTGTATGTAGCTGCAAAG 60
Query 92 CAGCAGATTCAATATGGCAACTCTGCAACACAAATTCAAACATCTCAGCAAGCAGCCAAG 151
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 61 CAGCAGATTCAATATGGCAACTCTGCAACACAAACTCAAACATCTCAGCAAGCAGCCAAG 120
Query 152 TCTCCAAGAACATCGATTCTCTTCTCGCGACGCTTGTCTCAAAGACTCCTTCAAAAGGTT 211
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 121 TCTCCAAGAACATCGATTCTCTTCTCGCGACGCTTGTCTCAAAGACTCCTTCACAAGGTT 180
Query 212 TCAAGACCACAACTTCTTCAAGTTACAACAACAAAGAGAAAGTGTATGGACTTGCTCAAT 271
|| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 181 TCGTGACCACAACTTCTCCAAGTTACAACAAAAAAGAGAAAGTGTATGGACTTGCTCAAT 240
Query 272 GTAGAGGAGATATCAGCAATACCGATTGCTCCACGTGTATCCAAGACGCGGCCAAGAAAA 331
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GTAGAGGAGATATCAGCAAGACCGATTGCTCCACGTGTATCCAAGACGCGGCCAAGAAAA 300
Query 332 TCCGTGAAGTGTGTCAGAACCAATCCGACTCAAGGATCTTGTACGATTTCTGCTTCTTAC 391
|||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 301 TCCGTGAAGTATGTCCGAACCAATCTGACTCAAGGATCTTGTACGATTTCTGCTTCTTAC 360
Query 392 GTTATAGCCAAGAGAATTTCATAGGGAAGCTTGACACGGGGGCTGGTCTTATATACTTCA 451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GTTATAGCCAAGAGAATTTCATAGGGAAGCTTGACACGGGGGCTGGTCTTATATACTTCA 420
Query 452 ACGTCGCTAACGTAACCGAAA-TCGACCCCAAAAAGTTCGATAATGAGCTCGGGGCACTC 510
||||||||||||||||||||| | |||||||||| ||| || |||||||| |||||||||
Sbjct 421 ACGTCGCTAACGTAACCGAAACT-GACCCCAAAACGTTTGACAATGAGCTTGGGGCACTC 479
Query 511 TTTGACAAAATTAGGTCTGAGGCTGTTTTACCTAAGAATAAAGGTTTAGGTAAAGGTAAG 570
||||||||||||||||||||||| ||||| ||||||| ||||||||||||||||||||||
Sbjct 480 TTTGACAAAATTAGGTCTGAGGCGGTTTTGCCTAAGAGTAAAGGTTTAGGTAAAGGTAAG 539
Query 571 ACAAAATTGACACCTTTTGTGACACTAAACGGTTTGGTCCAATGCACGAGAGACTTAAGC 630
|||||| ||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 540 ACAAAACTGACACCTTTTGTGACACTAAACGGTTTGGTTCAATGCACAAGGGACTTAAGC 599
Query 631 GAATTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGACAACTTGCCAC 690
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GCTTTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGACAACTTGCCAC 659
Query 691 AACAAGAAAGGTTGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGAGTTTTATCCG 750
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 AACAAGAAGGGATGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGAGTTTTATCCG 719
Query 751 TTTTACTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAATTTCTTCCGTT 810
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 TTTTATTTCCCTCTTGATCCGGCTAAAACTGGTCCTAGTGTTGGTAGAATTTCTTCCGTT 779
Query 811 CATCTCTCTCCGTAATCGCATAGTCTAATAAAAGAGTAAGTTTGTTTCTAAAGAGTATAT 870
| ||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||
Sbjct 780 CGTCTCTCTCCGTAATCACAAAGTCTAATAAAAGAGTAAGTTTGACTCTAAAGAGTATAT 839
Query 871 GTATATGTGTGCAAAATAAGGCTCTTTGCTTATGTTTCTTTCTTTAAGATGCAAGACAAT 930
||||||||||||||||||||||||| | ||| |||||||| |||||||||| ||| ||||
Sbjct 840 GTATATGTGTGCAAAATAAGGCTCTCTCCTTTTGTTTCTT-CTTTAAGATGTAAG-CAAT 897
Query 931 TAAGTAACCAAGTTATTTATGTTCTAG 957
||||| ||||||||||| ||||||||
Sbjct 898 TAAGTTGCCAAGTTATTTGTGTTCTAG 924
> Ahg925769 jgi|Araly1|925769|scaffold_201330.1
Length=428
Score = 333 bits (180), Expect = 1e-90
Identities = 198/207 (96%), Gaps = 0/207 (0%)
Strand=Plus/Plus
Query 621 AGACTTAAGCGAATTGGATTGCGCTCAATGCTTTGCAACTGCGGTCGGGAGCTTCATGAC 680
||||||||| | ||||||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 204 AGACTTAAGTGCTTTGGATTGCGCTCAATGCTTTGCAACTACGGTCGGGAGCTTCATAAC 263
Query 681 AACTTGCCACAACAAGAAAGGTTGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGA 740
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 264 AACTTGCCACAACAAGAAGGGATGTCGTGTTTTGTATAGTAGTTGCTATGTCCGGTACGA 323
Query 741 GTTTTATCCGTTTTACTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAAT 800
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 324 GTTTTATCCGTTTTATTTCCCTCTTGATCCGGCTAAAACCGGTCCTAGTGTTGGTAGAAT 383
Query 801 TTCTTCCGTTCATCTCTCTCCGTAATC 827
||||||||||| |||||||||||||||
Sbjct 384 TTCTTCCGTTCGTCTCTCTCCGTAATC 410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35530558644
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5