BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48543.1

Length=270
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg916358 jgi|Araly1|916358|Al_scaffold_0008_1109                    250    4e-66


> Ahg916358 jgi|Araly1|916358|Al_scaffold_0008_1109
Length=270

 Score =  250 bits (135),  Expect = 4e-66
 Identities = 149/156 (96%), Gaps = 0/156 (0%)
 Strand=Plus/Plus

Query  115  GTTAACCCAAAAACTGGATTGTGTGTTCTCAAAGATTGTGAGTCTGTGTGTAAGAAGACA  174
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||  
Sbjct  115  GTTAACCCAAAAACTGGATTGTGTGTTCTCAAAGATTGTGAGTCTCTGTGTAAGAAGAGG  174

Query  175  AGTAAAGGGTTAGAGGGTATTTGCTGGAAGTTTAATGCCAAAGGAAAAGATCCTAAGCAA  234
            ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||
Sbjct  175  AGTAAAGGGTTAGAGGGTATTTGCTGGAAGTTTAATGCCCAAGGAAAAGACCCTAAACAA  234

Query  235  TGCAAATGTTGTGGTTTATGGCCTCCACTTTACTAA  270
            |||||||||||||||||||||||||| |||||||||
Sbjct  235  TGCAAATGTTGTGGTTTATGGCCTCCTCTTTACTAA  270



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9432500467


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5