BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48560.1
Length=1931
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494918 jgi|Araly1|494918|fgenesh2_kg.8__734__AT5G48560.1 2689 0.0
> Ahg494918 jgi|Araly1|494918|fgenesh2_kg.8__734__AT5G48560.1
Length=1851
Score = 2689 bits (1456), Expect = 0.0
Identities = 1770/1908 (93%), Gaps = 75/1908 (4%)
Strand=Plus/Plus
Query 1 CCCTTACTATTTACGTTCTCTTCTTTCTCCTCCGACACACTCCAAAACTCATAAATCTAT 60
||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 1 CCCTTACCATTTACGTTCTCTTCTTTCTCCTCCGACACACTCCAAAACTCA-GAATCTCT 59
Query 61 CTGATGCGAATTTGACTAACTCTTTCGTAATTCAGGATCTTACTACAAATCTTTAACTCA 120
|||||| |||||||||||||||||||| | | | || || ||| || ||| |
Sbjct 60 CTGATGTGAATTTGACTAACTCTTTCG----T-A--A--TT--TA-GGATC-TT-ACT-A 104
Query 121 CCAATCTTCTTCTTATTCAAAG-ATTAGAGAGAAAATGGACAACGAGCTGTTTATGAACA 179
||| | |||||| ||| |||||||||||||||||||| ||||||||||||
Sbjct 105 -CAA----------A-TCAAAGAATT-GAGAGAAAATGGACAACGAGTTGTTTATGAACA 151
Query 180 CAGAGTTTCCACCACCGCCGGAGATGGCGACGCATTTCGAA-CACCAACAGTCTTCTTCA 238
||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||||
Sbjct 152 CAGAGTTTCCACCACCGCCGGAGATGGCGACGCATTTCGAACCACC-ACCGTCTTCTTCA 210
Query 239 TCGGCCATGATGCTTAATTGGGCTTTAATGGATCCAAATCCGCATCAAGATTCTTCCTTT 298
||||| ||||||||||| ||||||||||||||||||||||| | ||||||||||||||||
Sbjct 211 TCGGCGATGATGCTTAACTGGGCTTTAATGGATCCAAATCCACCTCAAGATTCTTCCTTT 270
Query 299 TTATGGGAAAAGTCAACGGaacaacaacaacaacaaAGCATCTTTGACTCTGCTTTAAGC 358
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 271 ATATGGGAAAAGTCAACGGAACAACAACAACAACAAAGCATCTTTGACTCTGCTTTAAGC 330
Query 359 TCATTAGTCTCATCACCGACGCCGTCAAATTCCAACTTCTCCGGCGGTGGCGGTGACGGT 418
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||
Sbjct 331 TCATTAGTCTCATCACCGACACCGTCAAATTCCAACTTCTCCGGTGGTGGCGGTGATGGT 390
Query 419 TTTCTCATCAGAGAACTCATCGGAAAGCTTGGAAACATCGGTAATAATAATAACAACTCC 478
||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 391 TTTCTTATCAGAGAACTCATCGGAAAGCTTGGAAACATCGGGAATAACAATAACAACTCC 450
Query 479 GGTGAGATCTACGGAACTCCGATGTCTCGCTCCGCCTCATGTTACGCAACTCCGATGAGC 538
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 451 GGTGAGATCTACGGAACTCCGATGTCTCGCTCTGCCTCATGTTACGCAACTCCGATGAGC 510
Query 539 TCTCCACCGCCACCGACGAATTCGAATTCTCAGATGATGATGAACAGAACGACGCCGTTG 598
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 511 TCTCCACCACCACCGACGAATACGAATTCTCAGATGATGATGAACAGAACGACGCCGTTG 570
Query 599 ACGGAATTCTCAGCAGATCCGGGTTTTGCGGAGAGAGCAGCTAGATTCTCTTGTTTTGGT 658
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 571 ACGGAATTCTCAGCAGATCCGGGTTTTGCGGAGAGAGCTTCAAGATTCTCTTGTTTTGGT 630
Query 659 AGTCGGAGCTTTAACGGAAGAACCAATACAAATCTTCCGATTAACAACGGTAATAACATG 718
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 631 AGCCGGAGCTTTAACGGAAGAACCAATACAAATCTTCCGATAAACAACGGTAATAACATC 690
Query 719 GTCAACAACTCCGGGAAGCTGACACGTGTCTCCAGCACACCAGCTCTTAAGGCTCTTGTT 778
|| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 691 GTTAACAACTCTGGGAAGCTGACACGTGTCTCAAGCACACCAGCTCTTAAGGCTCTTGTT 750
Query 779 TCACCGGAAGTCACACCCGGCGGCGAATTTTCCCGGAAGAGAAAATCTGTGCCTAAAGGA 838
|||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 751 TCACCGGAAGTCGCACCCGGCGGCGAATTTCCCCGGAAGAGAAAATCTGTGCCCAAAGGG 810
Query 839 AAATCCAAAGAAAACCCCATTTCTACAGCTTCTCCATCTCCTAGTTTCTCaaagacggc- 897
|||||||||||||| |||||||| || |||||||||||||||| |||||||||||||||
Sbjct 811 AAATCCAAAGAAAATCCCATTTCCACTGCTTCTCCATCTCCTACTTTCTCAAAGACGGCG 870
Query 898 g----g-aa-aagaat--ggtggaaaaggaggaagtaaaagttcagaagaaaaaggagga 949
| | || |||||| ||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 871 GAAAAGAAAGAAGAATGGGGTGG-AAA--AGGAAGTAAAAGTTTAGAAGAAAAAGGAGGA 927
Query 950 aaaaggagaagagaagaagaagatgatgaagaagaagaaggagaaggtgaagggaaCAAA 1009
||||||||||||||||| | | | ||| ||||||||||||||||||||| || ||
Sbjct 928 AAAAGGAGAAGAGAAGATG-A-A-GAT---GAAGAAGAAGGAGAAGGTGAA-GG----AA 976
Query 1010 AGCAATAACACAAAACCACCTGAGCCTCCTAAAGATTACATTCATGTTCGAGCTCGACGA 1069
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 977 A-CAATAACACAAAACCACCTGAGCCTCCTAAAGATTACATTCATGTTCGAGCTCGACGA 1035
Query 1070 GGCCAAGCAACCGATAGTCACAGCCTCGCCGAACGAGTTCGGAGGGAGAAAATTGGTGAA 1129
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1036 GGCCAAGCGACCGATAGTCACAGCCTCGCCGAACGAGTTCGGAGGGAGAAAATTGGTGAA 1095
Query 1130 AGGATGAAGCTTCTTCAAGATCTTGTGCCTGGATGCAATAAGGTTACTGGAAAAGCACTG 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1096 AGGATGAAGCTTCTTCAAGATCTTGTGCCTGGATGCAATAAGGTTACTGGAAAAGCACTG 1155
Query 1190 ATGCTTGATGAAATTATAAACTACGTACAATCATTGCAAAGACAAGTTGAGTTCTTGTCA 1249
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1156 ATGCTTGATGAAATTATAAACTATGTACAATCATTGCAAAGACAAGTTGAGTTCTTGTCA 1215
Query 1250 ATGAAGTTATCATCAGTGAACGACACCAGGCTGGATTTTAACGTGGACGCTCTTGTGTCA 1309
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1216 ATGAAGTTATCATCAGTGAACGACACCAGGCTGGATTTTAACGTGGACGCTCTTGTGTCA 1275
Query 1310 AAGGATGTTATGATTCCATCAAGTAACAACCGATTGCATGAAGAAGGACTCCAATCAAAG 1369
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1276 AAGGATGTTATGATTCCATCAAGTAACAACCGATTGCATGAAGAAGGACTCCAATCAAAG 1335
Query 1370 TCTTCAAGTCATCATCATCAACAACAAC---TTAATATTTATAACAATAAT--T-CACAA 1423
|||||||||| ||||||||||||||||| ||||||| ||||| | |||| | |||||
Sbjct 1336 TCTTCAAGTCGTCATCATCAACAACAACAACTTAATATGTATAATAGTAATAATGCACAA 1395
Query 1424 TTACTTCCCAATATTTCTTCCAATAACATGATGCTCCAGTCTCCTATGAACTCTTTGGAA 1483
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1396 TTACTTCCCAATATTTCTTCCAATAACATGATGCTCCAATCTCCTATGAACTCTTTGGAA 1455
Query 1484 ACCTCTACCTTAGCCAGAAGCTTCACTCACTTACCAACACTTACCCAATTTACTGACTCA 1543
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1456 GCCTCTACCTTAGCCAGAAGCTTCACTCACTTACCAACACTTACCCAATTCACTGACTCT 1515
Query 1544 ATTTCTCAGTATCAAATGTTTAGCGAAGAAGATTTACAAAGCATAGTAGGAATGGGAGTG 1603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1516 ATTTCTCAGTATCAAATGTTTAGCGAAGAAGATTTACAAAGCATAGTAGGAATGGGAGTG 1575
Query 1604 GCAGAAAACCCCAACAATGAATCTCAACACATGAAAATTGAGCTTTGATCAACCAttttt 1663
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1576 GCACTAAACCCCAACAATGAATCTCAACACATGAAAATTGAGCTTTGATCAACCATTTTT 1635
Query 1664 ttCAAGGTCTCAAGGAAGAAAAC-AAGAGAAAAAGGATTGATGGGTGTACATAAACCATA 1722
| || ||||||||||||||||| |||| |||||||||||||||||||||||||||||||
Sbjct 1636 T-CATGGTCTCAAGGAAGAAAAATAAGA-AAAAAGGATTGATGGGTGTACATAAACCATA 1693
Query 1723 CCAATATTTGTGATTTATTCATATACTCATCTCCAtatatatatgtatacacacttttat 1782
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||
Sbjct 1694 CCAATATTTGTGATTTATTCATATACTCATCTCCATTTATATATAAATACACACATTTAT 1753
Query 1783 ggaaataacctatatttttttactttttatactttatatTATCATCTTCCAATTCATTAT 1842
|||| ||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1754 GGAAGTAACCTATAATTTTT-ACTTTTTATATTTTATATTATCATCTTCCAATTCATTAT 1812
Query 1843 TAGCATTATTAGGGTTCAATTGTATTGTTATCCACTTTGGATTCCTTT 1890
||| || |||||||||||||||||||||||||| |||||||
Sbjct 1813 TAG--------GG-TTCAATTGTATTGTTATCCACTTTGGTTTCCTTT 1851
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72561916725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5