BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48570.1
Length=2130
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494919 jgi|Araly1|494919|fgenesh2_kg.8__735__AT5G48570.1 2778 0.0
> Ahg494919 jgi|Araly1|494919|fgenesh2_kg.8__735__AT5G48570.1
Length=2023
Score = 2778 bits (1504), Expect = 0.0
Identities = 1900/2080 (91%), Gaps = 72/2080 (3%)
Strand=Plus/Plus
Query 1 TCGGGACACATCTTTAGGCTCAAGGATTCAAATGAAAATCAGAAGTCTCTAGAAAAACCC 60
||||||||||||||||||||| ||| | || ||||||||| |||||||| ||||||
Sbjct 1 TCGGGACACATCTTTAGGCTC----ATT--ATTG-AAATCAGAATTCTCTAGAGAAACCC 53
Query 61 CAAAA-CACTCT-TT--CT-TCACTC-C-CCCTATAAATTCTCATCACAATTTCTCAAAC 113
|||| |||||| || || || ||| | ||||||||||||||||||||| || | | |
Sbjct 54 AAAAAGCACTCTCTTCACTCTCTCTCTCTCCCTATAAATTCTCATCACAA-TT-T--ACC 109
Query 114 CATCTCATCTCTGCCAACACACTCTCTAGAATT-CTCTCGTGATTATCGATTTCACTCTC 172
|| || | ||| ||||||| || | | || | ||| | || | | || |||||
Sbjct 110 CAACT--T-TCT--CAACACA--CT-T-G--TTACGCTC-T--CTA-C-AATT--CTCTC 151
Query 173 TTAA-ATTTGATCAGAAAATGGAAGACGATTTCGACACGCAGAACCAGTTTCCGGAAGAG 231
||| ||||||||| |||||||||||||||| |||| |||| |||||||| ||||||
Sbjct 152 GTAATTTTTGATCAG-AAATGGAAGACGATTTTGACATGCAG---CAGTTTCCAGAAGAG 207
Query 232 GAGCCAGAGGAGATGGATATGGATCTCCCCGACAATGACGAAGCTGACTCTGCTCCTTAT 291
|| |||||||||||||||||||||||| ||||| | ||||||||||||||||||||| ||
Sbjct 208 GAACCAGAGGAGATGGATATGGATCTCGCCGACGACGACGAAGCTGACTCTGCTCCTAAT 267
Query 292 CTGAAAATCGGCGAGGA-AATGGAGATCGGAAAATCAGGATTGAAGAAGAAACTTGTTAA 350
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 268 CTGAAAATCGGCGAGGAGAA-GGAGATCGGAAAATCAGGATTGAAGAAGAAACTTGTTAA 326
Query 351 GGAATGTGAAAAATGGGACACGCCTGAGAACGGTGACGAAGTTGAAGTGCATTACACTGG 410
|||| ||||||||||||| | |||||||| || ||||||||||||||||||||||| ||
Sbjct 327 GGAAGGTGAAAAATGGGATATACCTGAGAATGGAGACGAAGTTGAAGTGCATTACACGGG 386
Query 411 AACTTTGTTAGATGGTACCAAGTTTGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATT 470
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 387 AACTTTGTTAGATGGTACCAAGTTCGATTCGAGCCGTGACAGAGGAACTCCTTTCAAATT 446
Query 471 TACTCTTGGCCAAGGACATGTCATTAAAGGATGGGACTTGGGGATCAAGACAATGAAGAA 530
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 447 CACTCTTGGCCAAGGACATGTGATCAAAGGATGGGACTTGGGGATCAAGACAATGAAGAA 506
Query 531 AGGTGAAAATGCTATTTTCACCATTCCTCCTGAGCTGGCATATGGTGAAACCGGTTCACC 590
||||||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||
Sbjct 507 AGGTGAAAATGCTATTTTCACCATTCCGCCTGAGTTGGCTTATGGTGAAACCGGTTCACC 566
Query 591 GCCGACTATACCTCCGAACGCTACTCTTCAGTTTGATGTGGAGTTGATAGCATGGAGGAG 650
|||||||| |||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 567 ACCGACTATTCCTCCGAACGCTACTCTTCAATTTGATGTGGAGTTGATATCATGGAGGAG 626
Query 651 TGTTAAGGATATATGTGGTGATGGTGGTGTGTCTAAGAAAATAATTGTGGAAGGAGAAAA 710
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 627 TGTTAAGGATATATGTGGTGATGGTGGGGTGTTTAAGAAAATAATTGTGGAAGGAGAAAA 686
Query 711 ATGGGAGAAGCCAAAAGACCTTGATGAAGTTTACGTCAAGTATGAAGCTCGGCTTGAGGA 770
||||||||||||||| || ||||||||||| || ||||||||||||||||||||||||||
Sbjct 687 ATGGGAGAAGCCAAAGGATCTTGATGAAGTGTATGTCAAGTATGAAGCTCGGCTTGAGGA 746
Query 771 TGGCACCATTGTTGGAAAGTCTGATGGTGTAGAGTTTACTGTCAAGGAGGGCCATTTCTG 830
||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||
Sbjct 747 TGGCACCATTGTTGGAAGGTCTGATGGTGCAGAGTTCACTGTCAAGGAGGGCCATTTCTG 806
Query 831 TCCTGCGCTTTCTAAGGCTGTCAAAACCATGAAAAGAGGGGAGAAGGTTCTCCTGACTGT 890
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 807 TCCTGCGCTTGCTAAGGCTGTCAAAACCATGAAAAGAGGGGAGAAGGTTCTCCTAACTGT 866
Query 891 GAAGCCACAATATGGATTTGGGGAATTTGGAAGACCAGCTTCTGATGGTCTTCAAGCTGC 950
||||||||||||||| ||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 867 GAAGCCACAATATGGCTTTGGGGAAATTGGAAGACCAGCTTCTGATGGCCTTCAAGCTGC 926
Query 951 AATCCCACCAAATGCAACCCTTCAGATTGACCTTGAGTTGGTTTCTTGGAAGACTGTGGT 1010
|||||||||||||| || ||||| || |||||||||||||||||||||||||| |||||
Sbjct 927 AATCCCACCAAATGTGACTCTTCAAATCGACCTTGAGTTGGTTTCTTGGAAGACGGTGGT 986
Query 1011 GGAAGTAACTGATGACAGGAAGGTTATTAAGAAAATACTCAAGGAAGGAGAAGGATATGA 1070
||||||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||
Sbjct 987 GGAAGTAACTGATGACAAGAAGGTCATTAAGAAAATACTGAAGGAAGGAGAAGGATATGA 1046
Query 1071 GCGTCCCAATGAAGGAGC-GATTGTCAAATTGAAGTTGATTGGTAAACTTCAAGATGGAA 1129
|||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 1047 GCGTCCTAATGAAGGAGCAG-TTGTCAAATTGAAGTTGATTGGTAAACTTCAAGATGGAA 1105
Query 1130 CAACCGTGTTTGTGAAGAAAGGTCATGAAGAAGATGAGGAGCCGTTCGAGTTCAAGATTG 1189
| ||||| ||||||||||| |||||||||||||||| || ||||||||||| | ||
Sbjct 1106 CT---GTGTTCATGAAGAAAGGTTATGAAGAAGATGAGGAACCATTCGAGTTCAAAACTG 1162
Query 1190 ATGAAGAACAAGTGATAGAAGGGCTTGAAAAAGCTGTGATGGGCATGAAGAAGGGTGAGG 1249
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1163 ATGAAGAACAAGTAATTGAAGGGCTTGAAAAAGCTGTGATGGGCATGAAGAAGGGTGAGG 1222
Query 1250 TAGCACTCATCACAATTTCACCGGAATATGCTTTTGGTTCCTCTGAATCAAAACAGGAGC 1309
||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1223 TAGGACTCATAACAATTTCACCGGAATATGCTTTTGGTTCCTCTGAATCAAAGCAGGAGC 1282
Query 1310 TGGCTGTAATACCGCCAAACTCGACTGTATACTATGAGGTCGAGTTGGTATCTTTCATCA 1369
|||||||||||||||||||||||||||||| ||| ||||| ||| |||||||||||||||
Sbjct 1283 TGGCTGTAATACCGCCAAACTCGACTGTATTCTACGAGGTTGAGCTGGTATCTTTCATCA 1342
Query 1370 AGGAGAAAGAGTCTTGGGATATGAACACACAGGAAAGGATAGAAGCTGCAGGCAAGAAGA 1429
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 1343 AGGAGAAAGAGTCTTGGGATATGAACACGCAGGAAAAGATAGAAGCTGCAGGCAAGAAGA 1402
Query 1430 AAGAAGAAGGCAATGTGTTGTTCAAAGCTGGAAAATACGCAAGAGCTTCAAAGAGATACG 1489
| |||||||| ||| || |||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1403 AGGAAGAAGGGAATATGCTGTTCAAAGCTGGAAAATACGCGAGAGCTTCAAAGAGATATG 1462
Query 1490 AGAGGGGTGTCAAATATATAGAATATGACTCAACTTTCGACGAAGAGGAGAAAAAGAAAT 1549
||||||||||||| || ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1463 AGAGGGGTGTCAAGTACATAGAATATGAGTCAACTTTCGACGAAGAGGAGAAAAAGAAAG 1522
Query 1550 CAAAAGATCTCAAGATTGCCTGTAACCTGAATGATGCAGCTTGCAAGCTGAAACTGAAAG 1609
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1523 CAAAAGATCTCAAGATTGCCTGTAACCTTAATGATGCAGCTTGCAAGCTGAAACTGAAAG 1582
Query 1610 ATTACAAGGAAGCAGCAAAATTGTCCACAAAGGTGTTGGAGATGGATAGTAGGAACGTGA 1669
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1583 ATTACAAGGAAGCAGCAAAATTGTCCACTAAGGTGTTGGAGATGGATAGTAGGAACGTGA 1642
Query 1670 AGGCAATGTATAGGAGAGCACATGCCTACTTGGAGACGGCGGATCTTGATCTGGCTGAGC 1729
||||||||| ||||||||||||||||||| |||||||||| ||||||||| | |||||||
Sbjct 1643 AGGCAATGTTTAGGAGAGCACATGCCTACATGGAGACGGCAGATCTTGATTTAGCTGAGC 1702
Query 1730 TTGATATCAAGAAAGCTCTCGAAATCGATCCAGACAACAAGGAGGTGAAGATAGAATATA 1789
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1703 TTGATATCAAGAAAGCTCTCGAAATCGATCCTGACAACAAGGAGGTGAAGATAGAATATA 1762
Query 1790 AGAAGTTGAAGGAGAAGGTGAAAGAGTATAACAAGAAAGATGCTAAGTTTTACAGCAACA 1849
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1763 AGAAGTTGAAGGAGAAGGTGAAAGAGTACAACAAGAAAGATGCTAAGTTTTACAGCAACA 1822
Query 1850 TGTTGTCGAAAATGCTTGAGCCACACAAAGGAACTCAGAAGGAAGCACAAGCGATGAGTA 1909
|||||||||||||||||||||||||||||||| | | | |||||||
Sbjct 1823 TGTTGTCGAAAATGCTTGAGCCACACAAAGGA-----G-------C----G--ATGAGTA 1864
Query 1910 TTGACACCAAGGCATGAGTCTTTGAATCACTTTAGAGAGTCGCATTGATTCCAAAAACTA 1969
||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||
Sbjct 1865 TTGACACCAAGGCATGAGTCTTTAAATCACTTTAGAGAGTAACATTGATTCCAAAAAGTA 1924
Query 1970 AATGTGAAAAGTCTACAAATTTCTGTTTTTACTCTTTGTAATCAATCTTGGTGTGTGTTA 2029
|||||||| ||||| || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 1925 AATGTGAAGAGTCTGTAATTTTCTGTTTT-ACTCTTTGTAATCAATCTTGGTGTGTGTTA 1983
Query 2030 CTGTTTCAGA-GTTGTT-A--TAAAACAGACTTGTAATAA 2065
|||||||||| |||||| | |||||||||||||||||||
Sbjct 1984 CTGTTTCAGACGTTGTTGAAATAAAACAGACTTGTAATAA 2023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80141875480
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5