BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48580.1
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
Ahg952183 jgi|Araly1|952183|scaffold_4300008.1 869 0.0
Ahg357068 jgi|Araly1|357068|fgenesh1_pg.C_scaffold_8000855 826 0.0
Ahg952182 jgi|Araly1|952182|scaffold_4300007.1 387 1e-106
Ahg949280 jgi|Araly1|949280|scaffold_801167.1 387 1e-106
> Ahg952183 jgi|Araly1|952183|scaffold_4300008.1
Length=539
Score = 869 bits (470), Expect = 0.0
Identities = 510/530 (96%), Gaps = 0/530 (0%)
Strand=Plus/Plus
Query 449 TGAGAAGCGATTATGGCGAGCAAGATGAGTCTCCGTTACTCTCTCTTTTTGATCTTCTTC 508
||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 10 TGAGAGGCGATTATGGCGAGCAAGATGAGTCTCCATTGCTCTCTCTTTTTGATCTTCTTC 69
Query 509 TCTCTCATTTCACTCCAAGGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATC 568
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 TCTCTCATTTCACTCCAAGGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATC 129
Query 569 GGTGTCAAGTTTAAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAG 628
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 130 GGTGTCAAGTTTAAGCCAAAAACATGTGAAGTTCAGGCTCATAAAGGTGATACGATCAAG 189
Query 629 GTGCACTATAGGGGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGT 688
|||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 190 GTGCACTATAGGGGGAAACTTACTGATGGAACTGTATTCGATTCAAGCTTTGAAAGGGGT 249
Query 689 GATCCGTTTGAGTTTAAATTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGTTTG 748
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 250 GATCCGTTTGAGTTTAAACTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGTTTG 309
Query 749 CTAGGAGCGTGTGTAGGTGAGAAGAGGAAGTTAAAGATACCTGCTAAACTTGGATATGGA 808
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 310 TTAGGAGCTTGTGTAGGTGAGAAGAGGAAGTTAAAGATACCTGCAAAACTTGGATATGGA 369
Query 809 GAACAAGGCTCTCCACCTACTATCCCCGGTGGTGCAACACTGATCTTTGACACAGAGCTT 868
|| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 370 GAGCAAGGCTCTCCACCTACTATCCCCGGTGGTGCGACACTGATATTTGACACAGAGCTT 429
Query 869 ATTGCGGTAAATGAAAAACCAGCTGGTGGTGAAGAATACGGAGGGGATGAAGATGATGAG 928
|||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||
Sbjct 430 ATTGCGGTAAATGAAAAACCAGCTGGTGGTGAAGAAGACGGAGGAGATGAAGACGATGAG 489
Query 929 GGATATGGAAATGACGAGCTATGATCCGGTCTCCGTTCTTTAACGATTTT 978
||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct 490 GGATATGGAAATGACGAGCTATGATCCGGTCTCTGTTCTCCAACGGTTTT 539
> Ahg357068 jgi|Araly1|357068|fgenesh1_pg.C_scaffold_8000855
Length=492
Score = 826 bits (447), Expect = 0.0
Identities = 477/492 (97%), Gaps = 0/492 (0%)
Strand=Plus/Plus
Query 461 ATGGCGAGCAAGATGAGTCTCCGTTACTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCA 520
|||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAGCAAGATGAGTCTCCATTGCTCTCTCTTTTTGATCTTCTTCTCTCTCATTTCA 60
Query 521 CTCCAAGGTTTTGCCAAGAAGACCGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGTTT 580
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCCAAGGTTTTGCCAAGAAGACTGGAGATGTGTCGGAATTGCAGATCGGTGTCAAGTTT 120
Query 581 AAGCCAAAAACATGTGAAGTTCAGGCTCACAAAGGTGATACGATCAAGGTGCACTATAGG 640
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 AAGCCAAAAACATGTGAAGTTCAGGCTCATAAAGGTGATACGATCAAGGTGCACTATAGG 180
Query 641 GGGAAACTTACTGATGGAACTGTATTCGATTCGAGTTTTGAAAGGGGTGATCCGTTTGAG 700
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 181 GGGAAACTTACTGATGGAACTGTATTCGATTCAAGCTTTGAAAGGGGTGATCCGTTTGAG 240
Query 701 TTTAAATTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGTTTGCTAGGAGCGTGT 760
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 TTTAAATTAGGAAGTGGTCAGGTTATCAAAGGTTGGGATCAAGGCTTGCTAGGAGCGTGT 300
Query 761 GTAGGTGAGAAGAGGAAGTTAAAGATACCTGCTAAACTTGGATATGGAGAACAAGGCTCT 820
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 301 GTAGGTGAGAAGAGGAAGTTAAAGATACCTGCAAAACTTGGATATGGAGAGCAAGGCTCT 360
Query 821 CCACCTACTATCCCCGGTGGTGCAACACTGATCTTTGACACAGAGCTTATTGCGGTAAAT 880
||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 361 CCACCTACTATCCCCGGTGGTGCAACATTGATATTTGACACAGAGCTTATTGCGGTAAAT 420
Query 881 GAAAAACCAGCTGGTGGTGAAGAATACGGAGGGGATGAAGATGATGAGGGATATGGAAAT 940
|||||||||||||||||||||||| ||||||| ||||| || ||||||||||||||||||
Sbjct 421 GAAAAACCAGCTGGTGGTGAAGAAGACGGAGGAGATGAGGACGATGAGGGATATGGAAAT 480
Query 941 GACGAGCTATGA 952
||||||||||||
Sbjct 481 GACGAGCTATGA 492
> Ahg952182 jgi|Araly1|952182|scaffold_4300007.1
Length=1079
Score = 387 bits (209), Expect = 1e-106
Identities = 242/258 (94%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 1 GAGCTGCCGTTTTTTCACCAAGACGGAACTTAGAAACCTTCCCTGAGGCGACCGTGGAAC 60
||||||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 260 GAGCTGCCGCTTTTTCACCAAGACGGTACTTAGAAACCTTCCCTGAGCCGAGCGTGGAAC 201
Query 61 TAGAGGCGCGTCGATGCTCTGTCCCGAAGACGCAGCGGAAACCACCACCAACGAATCGTA 120
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 200 CAGAGGCGCGTCGATGCTCTGTCCCGAAGACGTAGCCGCAACCACCACCAACGAATCGTA 141
Query 121 TCGGAACTTACGACGCGAGGGGAGAAAAACGCAATCGCCGCCGCGGTTTTGTTTAACGAA 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 140 CCGGACCTTACGACGCGAGGGGAGAAAAACGCAATCGCCGCCGCGGTTTTGTTTAACGGA 81
Query 181 ATTGCGGCGCGATGGGGGAAACGG-GAGAGATCCGTGGTGGGAGAGAGAGGTGTCCATTG 239
|||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 80 ATTGCGGCGCGACGGGAGAAA-GGAGAGAGATCCGTGGTGGGAGAGAGAGGTGTCCATTG 22
Query 240 AAAGAGATAAGCAAAAAA 257
||||||| ||||||||||
Sbjct 21 AAAGAGAGAAGCAAAAAA 4
> Ahg949280 jgi|Araly1|949280|scaffold_801167.1
Length=1079
Score = 387 bits (209), Expect = 1e-106
Identities = 242/258 (94%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 1 GAGCTGCCGTTTTTTCACCAAGACGGAACTTAGAAACCTTCCCTGAGGCGACCGTGGAAC 60
||||||||| |||||||||||||||| |||||||||||||||||||| ||| ||||||||
Sbjct 261 GAGCTGCCGCTTTTTCACCAAGACGGTACTTAGAAACCTTCCCTGAGCCGAGCGTGGAAC 202
Query 61 TAGAGGCGCGTCGATGCTCTGTCCCGAAGACGCAGCGGAAACCACCACCAACGAATCGTA 120
||||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct 201 CAGAGGCGCGTCGATGCTCTGTCCCGAAGACGTAGCCGCAACCACCACCAACGAATCGTA 142
Query 121 TCGGAACTTACGACGCGAGGGGAGAAAAACGCAATCGCCGCCGCGGTTTTGTTTAACGAA 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 141 CCGGACCTTACGACGCGAGGGGAGAAAAACGCAATCGCCGCCGCGGTTTTGTTTAACGGA 82
Query 181 ATTGCGGCGCGATGGGGGAAACGG-GAGAGATCCGTGGTGGGAGAGAGAGGTGTCCATTG 239
|||||||||||| ||| |||| || |||||||||||||||||||||||||||||||||||
Sbjct 81 ATTGCGGCGCGACGGGAGAAA-GGAGAGAGATCCGTGGTGGGAGAGAGAGGTGTCCATTG 23
Query 240 AAAGAGATAAGCAAAAAA 257
||||||| ||||||||||
Sbjct 22 AAAGAGAGAAGCAAAAAA 5
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43993846218
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5