BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48600.2

Length=3965
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg952180 jgi|Araly1|952180|scaffold_4300005.1                       265    2e-69


> Ahg952180 jgi|Araly1|952180|scaffold_4300005.1
Length=283

 Score =  265 bits (143),  Expect = 2e-69
 Identities = 160/168 (95%), Gaps = 1/168 (1%)
 Strand=Plus/Plus

Query  106  ATGGAGGAAGATGAGCCAATGGGCGGCGGCGAGTCTGAGCCTGAGCAGAGGAAATCTGGA  165
            ||||||||||||||||||||  |||||||||||||||||||||| |||||||||||||||
Sbjct  21   ATGGAGGAAGATGAGCCAATTCGCGGCGGCGAGTCTGAGCCTGACCAGAGGAAATCTGGA  80

Query  166  ACTCCGAGACTTTACATAAAAGAGCTTGTCATGAGAAACTTCAAATCATATGCTGGTGAA  225
            ||||||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||
Sbjct  81   ACTCCGAGACTTTACATTAAAGAGCTTGTGATGCGAAACTTCAAATCATATGCTGGTGAA  140

Query  226  CAACGCGTCGGTCCTTTCCACAAGAGTTTTTCTGCGGTGGTTGGACCT  273
            ||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct  141  CAACGCGTCGGTCCTTTCCACAAGAGTTTTTCTGCGGTGGTCG-ACCT  187



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 149870722474


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5