BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48610.1
Length=2538
Score E
Sequences producing significant alignments: (Bits) Value
Ahg333124 jgi|Araly1|333124|fgenesh1_pm.C_scaffold_43000001 1376 0.0
Ahg333364 jgi|Araly1|333364|fgenesh1_pm.C_scaffold_625000001 1011 0.0
> Ahg333124 jgi|Araly1|333124|fgenesh1_pm.C_scaffold_43000001
Length=1404
Score = 1376 bits (745), Expect = 0.0
Identities = 842/889 (95%), Gaps = 5/889 (1%)
Strand=Plus/Plus
Query 674 aggacaagtacaaggaaaagaagcataagaaggataaagaaaagagagagggtaaagaga 733
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 29 AGGACAAGTACAAGGAAAAGAAGCATAAGAAGGATAAAGAAAAGAAAGAGGGTAAAGAGA 88
Query 734 aaaagagtaaagatagaagcaaagacaaacagaaggaaagaaaggagaaaaaagacaaac 793
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 89 AAAAGAGTAAAGATAGAAGCAAAGACAAACAGAAGGAAAGAAAGGAGAAAAAAGACAAAC 148
Query 794 ataaagatcagaaagacaaggagaaaggtaaagaaaaaggcaaaCCTTTGGAGGAGAAGA 853
||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 149 ATAAAGATCGGAAAGAAAAGGAGAAAGATAAAGAAAAAAGCAAACCTTTGGAGGAGAAGA 208
Query 854 AAGCTGAGCTGCTGACAAATGCCGGGCACAGAGAGAATCGTGTAACAGATACGGTGCAGA 913
|||||||| |||||||||| ||||||||||||| ||| |||||||||||| |||||||
Sbjct 209 AAGCTGAGGTGCTGACAAACACCGGGCACAGAGATAATTTTGTAACAGATACCGTGCAGA 268
Query 914 ATAATAGTAATGGAGAGTCAAAGTATGTACAGGACCTGGCAAGAAGGATCAGATATGACG 973
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 AGAATAGTAATGGAGAGTCAAAGTATGTACAGGACCTGGCAAGAAGGATCAGATATGACG 328
Query 974 AAGAAGCAACAGGAAGTCAGAGTGCACAAAGGATTGATCATCCTAACCaaaaaaaTGTAG 1033
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 329 AAGAAGCAACAGGAAGTCAGAGTGCACAAAAGATTGATCATCCTAACCAAAAAAATGTAG 388
Query 1034 GAATAACAGAAAAAGCATTTGAGAACAGCCCAATTGAAGAAACAAGCCATAGGGTAGATG 1093
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 389 GAATAACAGGAAAAGCATTTGTGAACAGCCCAATTGAAGAAACAAGCCATAGGGTAGATG 448
Query 1094 ACAATAAGAGAATCAATAACCAGAAGAACTTTACAGCGGCAAAAAGTTCTGAAAATGCAG 1153
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 449 CCAATAAGAGAATCAATACCCAAAAGAACTTTACAGCGGCAAAAAGTTCTGAAAATGCAG 508
Query 1154 TTTCTCGAGTATCATTTGGTGCAGATCATAAAAGAGCTGAGGTGATGGGTAAACCAATGG 1213
|||||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||||
Sbjct 509 TTTCTCGAGTATCATTTGGTGCTGATCAGAAAAGAGCTGAGGTTATGGGTAAACCAATGG 568
Query 1214 AGAACAGAGACCAGGTGAGGCAAACAGAATCAGCTGAGAAGAGTCACCGCAAGGAAAATG 1273
||| |||||||||| ||||||||||||||||||||||||||| |||| ||||||||| ||
Sbjct 569 AGACCAGAGACCAGATGAGGCAAACAGAATCAGCTGAGAAGATTCACTGCAAGGAAAGTG 628
Query 1274 TGACCAAGAGTGAGAAACCAAGGGATCaagaaggggtaaagaagactgaagcaaaggata 1333
||||||||||||| ||||||||||| | |||||||||||||||| ||||||||||||||
Sbjct 629 TGACCAAGAGTGATAAACCAAGGGA--A-GAAGGGGTAAAGAAGAGTGAAGCAAAGGATA 685
Query 1334 aagacagaaataaagagaagaaagaggaaaaaacagagtcgataaataaaactcgtcagg 1393
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 686 AAGACAGAAATAAAGAGAAGAAAGAGGAAAAAACAGAGTCAATAAATAAAACTCGTCAGG 745
Query 1394 agaaaccaaaaTTGATACGAGGGCCCAAGTTAGAGGAAAGAGAAAAGGACTCTCCGGATT 1453
||||||||||||||||| |||||||||| ||||| ||||||||||||||||||| ||||
Sbjct 746 AGAAACCAAAATTGATAGGAGGGCCCAAATTAGAAGAAAGAGAAAAGGACTCTCTGGATA 805
Query 1454 TAAGAAATTGCAAGCTGCCTGACGTTTCACGGACAAGCATCAAGAACCTTCAC-ACCGAG 1512
||||||||||||| |||||||| ||||||||| | ||| ||||||||||| | ||||||
Sbjct 806 TAAGAAATTGCAAACTGCCTGAGGTTTCACGGGCGAGCGTCAAGAACCTT-ATTACCGAG 864
Query 1513 GGAAATCTTGGCAAACGGAAGGATCATATGACAAATGGATTCCTGTATG 1561
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 865 GGAAATCTTGGCAAACGGAAGGATCATATGACAAATGGATTCTTGTATG 913
Score = 813 bits (440), Expect = 0.0
Identities = 476/494 (96%), Gaps = 0/494 (0%)
Strand=Plus/Plus
Query 1678 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 911 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 970
Query 1738 AAAATGGAAGAACATTAGGTGCACCCCGAACTCCTCCAATGCCTGCTTCTGAGGTGCAAG 1797
|||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 971 AAAATGGAAGAATAATAGGTGCACCCCGAACTCCTCCAATGCCTACTTCTGAGTTGCAAG 1030
Query 1798 GAACAACTTGCAAGCCACAAGTCAAAGAAGTCAGAATTAATGGTTTTGCTGTCTCTGGAG 1857
||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 1031 GAATGACTTGCAAGCCACAAGTCAAAGAAGTTAGAATTAACGGTTTTGCTGTCTCTGGAG 1090
Query 1858 AAAAACGTAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 1917
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1091 AAAAACATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 1150
Query 1918 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1151 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1210
Query 1978 TCCATGTACCTACAAGGGAGCTGTTGCCAGAGATTGATGATGACCAAGAATGGCTACTTG 2037
|| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1211 TCAATGTACCAACAAGGGAGCTGTTGCTGGAGGTTGATGATGACCAAGAATGGCTACTTG 1270
Query 2038 GTCAGTCGGGTATCAAATTAAAAAGGGCGAGAACAGATCCTCCAGATTCTGGCGAATCCT 2097
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1271 GTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACGGATCCTCCAGATTCTGGCGAATCCT 1330
Query 2098 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAGTCTGCGGATATCACAGCTCTTCCTTATG 2157
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1331 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAATCTGCGGATATCGCAGCTCTTCCTTATG 1390
Query 2158 TAGTTCCATTTTAG 2171
||||||||||||||
Sbjct 1391 TAGTTCCATTTTAG 1404
> Ahg333364 jgi|Araly1|333364|fgenesh1_pm.C_scaffold_625000001
Length=1203
Score = 1011 bits (547), Expect = 0.0
Identities = 636/679 (94%), Gaps = 6/679 (1%)
Strand=Plus/Plus
Query 887 AGAATCGTG-TAACAGATA-CGGTGCAGAATAATAGTAATGGAGAG-TCAAAGTATGTAC 943
|||||| || || |||||| | |||| ||||||||||||||||||| || ||||||||||
Sbjct 36 AGAATCTTGTTACCAGATACCCGTGCCGAATAATAGTAATGGAGAGTTC-AAGTATGTAC 94
Query 944 AGGACCTGGCAAGAAGGATCAGATATGACGAAGAAGCAACAGGAAGTCAGAGTGCACAAA 1003
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||
Sbjct 95 AGGACCTGGCAAGAAGGATCAGATATGACGAAAAAGCAACAGGAAGTCAGAGTGAACAAA 154
Query 1004 GGATTGATCATCCTAACCaaaaaaaTGTAGGAATAACAGAAAAAGCATTTGAGAACAGCC 1063
|||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 155 AGATTGATCATCCTAACCAAAAAAATGTAGGAATAACAGGAAAAGCATTTGTGAACAGCC 214
Query 1064 CAATTGAAGAAACAAGCCATAGGGTAGATGACAATAAGAGAATCAATAACCAGAAGAACT 1123
|||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||
Sbjct 215 CAATTGAAGAAACAAGCCATAGGGTAGATGCCAATAAGAGAATCAATACCCAAAAGAACT 274
Query 1124 TTACAGCGGCAAAAAGTTCTGAAAATGCAGTTTCTCGAGTATCATTTGGTGCAGATCATA 1183
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 275 TTACAGCGGCAAAAAGTTCTGAAAATGCAGTTTCTCGAGTATCATTTGGTGCTGATCAGA 334
Query 1184 AAAGAGCTGAGGTGATGGGTAAACCAATGGAGAACAGAGACCAGGTGAGGCAAACAGAAT 1243
||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 335 AAAGAGCTGAGGTTATGGGTAAACCAATGGAGACCAGAGACCAGATGAGGCAAACAGAAT 394
Query 1244 CAGCTGAGAAGAGTCACCGCAAGGAAAATGTGACCAAGAGTGAGAAACCAAGGGATCaag 1303
|||||||||||| |||| ||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 395 CAGCTGAGAAGATTCACTGCAAGGAAAGTGTGACCAAGAGTGATAAACCAAGGGATCAAG 454
Query 1304 aaggggtaaagaagactgaagcaaaggataaagacagaaataaagagaagaaagaggaaa 1363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 455 AAGGGGTAAAGAAGACTGAAGCAAAGGATAAAGACAGAAATAAAGAGAAGAAAGAGGAAA 514
Query 1364 aaacagagtcgataaataaaactcgtcaggagaaaccaaaaTTGATACGAGGGCCCAAGT 1423
|||||||||| ||||| |||||| ||||||||||||||||||||||| |||||||||| |
Sbjct 515 AAACAGAGTCAATAAAGAAAACTTGTCAGGAGAAACCAAAATTGATAGGAGGGCCCAAAT 574
Query 1424 TAGAGGAAAGAGAAAAGGACTCTCCGGATTTAAGAAATTGCAAGCTGCCTGACGTTTCAC 1483
|||| ||||||||||||||||||| |||| ||||| ||||||| |||||||| |||||||
Sbjct 575 TAGAAGAAAGAGAAAAGGACTCTCTGGATATAAGATATTGCAAACTGCCTGAGGTTTCAC 634
Query 1484 GGACAAGCATCAAGAACCTTCAC-ACCGAGGGAAATCTTGGCAAACGGAAGGATCATATG 1542
|| | ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 635 GGGCGAGCGTCAAGAACCTT-ATTACCGAGGGAAATCTTGGCAAACGGAAGGATCATATG 693
Query 1543 ACAAATGGATTCCTGTATG 1561
|||||||||||| ||||||
Sbjct 694 ACAAATGGATTCTTGTATG 712
Score = 813 bits (440), Expect = 0.0
Identities = 476/494 (96%), Gaps = 0/494 (0%)
Strand=Plus/Plus
Query 1678 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 710 ATGAAAATGGAACCACGCCACACAAGTTACAGAAGCTGAGTGCTTCTGTACCATCTGTGG 769
Query 1738 AAAATGGAAGAACATTAGGTGCACCCCGAACTCCTCCAATGCCTGCTTCTGAGGTGCAAG 1797
|||||||||||| | ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 770 AAAATGGAAGAATAATAGGTGCACCCCGAACTCCTCCAATGCCTACTTCTGAGTTGCAAG 829
Query 1798 GAACAACTTGCAAGCCACAAGTCAAAGAAGTCAGAATTAATGGTTTTGCTGTCTCTGGAG 1857
||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 830 GAATGACTTGCAAGCCACAAGTCAAAGAAGTTAGAATTAACGGTTTTGCTGTCTCTGGAG 889
Query 1858 AAAAACGTAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 1917
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 AAAAACATAAAGTCTGTCCACCAAGCCCTTTGGCTGCAACAATGAAAGTGAAAGTCAAGG 949
Query 1918 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1977
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AAAATGGTGAAGCATCCGCAAAGCCGCCTCATCCTGACCTAAAGTATCTCAATCAGATAC 1009
Query 1978 TCCATGTACCTACAAGGGAGCTGTTGCCAGAGATTGATGATGACCAAGAATGGCTACTTG 2037
|| ||||||| |||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1010 TCAATGTACCAACAAGGGAGCTGTTGCTGGAGGTTGATGATGACCAAGAATGGCTACTTG 1069
Query 2038 GTCAGTCGGGTATCAAATTAAAAAGGGCGAGAACAGATCCTCCAGATTCTGGCGAATCCT 2097
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1070 GTCAGTCGGGTATCAAATTAAAAAAGGCGAGAACGGATCCTCCAGATTCTGGCGAATCCT 1129
Query 2098 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAGTCTGCGGATATCACAGCTCTTCCTTATG 2157
||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||
Sbjct 1130 TGCAGGTCTGGAACCAAGCTTTCAGAATAGAATCTGCGGATATCGCAGCTCTTCCTTATG 1189
Query 2158 TAGTTCCATTTTAG 2171
||||||||||||||
Sbjct 1190 TAGTTCCATTTTAG 1203
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95682695440
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5