BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48640.1
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494926 jgi|Araly1|494926|fgenesh2_kg.8__742__AT5G48640.1 1397 0.0
> Ahg494926 jgi|Araly1|494926|fgenesh2_kg.8__742__AT5G48640.1
Length=915
Score = 1397 bits (756), Expect = 0.0
Identities = 866/918 (94%), Gaps = 12/918 (1%)
Strand=Plus/Plus
Query 8 CTTCTCCTCCTTACCAAAGACTCGACGGTCTACCGGAAAAAATGGCTGCCAATTTCTGGA 67
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CTTCTCCTCCTTACCAAAAACTCGACGGTCTATCGGAAAAAATGGCTGCCAATTTCTGGA 60
Query 68 ATTCATCTCACTATAAACAGCTTTTGGATCCAGAAGAAGTCGACGTAGTTCATGATCTCG 127
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 61 ATTCATCCCACTATAAACAGCTTTTGGATCCAGAAGAAGTCGATGTAGTTCATGAACTTG 120
Query 128 ATAAAGAACGTGGAATCTCAATTGATGATTTTAAGCTCATCAAGTTCCATATGTCTAATC 187
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 121 ATAAAGAACGTGGAATTTCAATTGAGGATTTTAAGCTCATCAAGTTCCATATGTCTAATC 180
Query 188 ATATTATGAAATTGGCTCAGCACATTAAAGTGAGGCAAAGGGTTGTAGCTACTGCAATTA 247
||||||||||||||||||| |||||||||||||||||||||||||| ||||| || ||||
Sbjct 181 ATATTATGAAATTGGCTCAACACATTAAAGTGAGGCAAAGGGTTGTGGCTACCGCGATTA 240
Query 248 CGTATATGAGACGGGTTTATATCAGAAAGAGTATGGTAGAGTTTGAGCCTCGACTTGTTG 307
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 CGTATATGAGACGGGTTTATATCAGAAAGAGTATGGTAGAGTTTGAGCCTCGTCTTGTTG 300
Query 308 CTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATAGTGCAGGCCAGGAATC 367
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 301 CTCTTACGTGCTTGTACCTGGCATCTAAAGCTGAAGAAAGCATTGTGCAGGCCAGGAATC 360
Query 368 TTGTTTTTTACATCAAAAGATTGTATCCTGATGAGTACAACAAATATGAACTAAAGGATA 427
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 361 TTGTTTTTTACATCAAAAGATTGTATCCTGATGAGTACAACAAATATGAACTAAAAGATA 420
Query 428 TATTAGGAATGGAGATGAAGGTGTTAGAAGCACTAGATTATTATCTGGTTGTGTTTCACC 487
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 421 TATTAGGAATGGAGATGAAGGTCTTAGAAGCACTAGACTATTATCTGGTTGTGTTTCACC 480
Query 488 CTTACCGGTCATTATCGGAGTTTTTGCAAGATGCTGCATTAAACGATGTAAATATGAACC 547
|||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 481 CTTACCGGTCATTATCTGAGTTTTTGCAAGATGCTGCAATAAACGATGTAAATATGAACC 540
Query 548 AGATTACATGGGGAATTGTTAATGATACTTATAAGATGGACCTCATTCTTGTACACCCTC 607
| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 541 AAATTTCATGGGGAATTGTTAACGATACTTATAAGATGGACCTCATTCTTGTACACCCTC 600
Query 608 CCTACCGCATAGCGCTAGCATGCATATACATAGCAAGTGTCCACAGAGAGAAAGATATCA 667
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 601 CATATCGCATAGCGCTAGCATGCATATACATAGCAAGTGTCCACAGAGAGAAAGACATCA 660
Query 668 CTGCATGGTTTGAAGATCTTCATGAGGACATGAACTTGGTAAAGAATATTGCCATGGAGA 727
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 661 CTGCCTGGTTTGAAGATCTTCATGAGGACATGAACTTGGTAAAGAACATTGCCATGGAGA 720
Query 728 TACTGGACTTCTATGAGAACTACAGAACAATCACAGAGGAAAAAGTGAATTCTGCCTTCA 787
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||| ||||
Sbjct 721 TTCTGGACTTCTATGAGAATTACAGAACAATCACAGAGGAAAAAGTGAATACTGCTTTCA 780
Query 788 GCAAATTGGCTTTGAAGCTGTAG-AG---A---A-TCACCTCCATCTCCAAGACTTATCG 839
|||||||||||||||| | |||| || | | | ||||||||||||||| |||||
Sbjct 781 GCAAATTGGCTTTGAAACCGTAGCAGCCGAGGGAATTGCCTCCATCTCCAAGATTTATCT 840
Query 840 CACAGaaaaaa-aTGATTAGAGACTTCCACAATTGCCCATCCATCTAGCTTTGTGGCAAA 898
||||||||||| | |||||||||||| |||||||||||||| | |||||||||||||||
Sbjct 841 CACAGAAAAAACAAGATTAGAGACTTTCACAATTGCCCATC--T-TAGCTTTGTGGCAAA 897
Query 899 CATGTAACACTGTTATTA 916
|||||||||||||| |||
Sbjct 898 CATGTAACACTGTTGTTA 915
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34501239885
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5