BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48650.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494927 jgi|Araly1|494927|fgenesh2_kg.8__743__AT5G48650.1 2344 0.0
> Ahg494927 jgi|Araly1|494927|fgenesh2_kg.8__743__AT5G48650.1
Length=1639
Score = 2344 bits (1269), Expect = 0.0
Identities = 1532/1656 (93%), Gaps = 29/1656 (2%)
Strand=Plus/Plus
Query 1 CCTCTTCCGTTGCCTTTTCGCTTTCTCCGTACACTTGGCCTTCCTTCTAGCGATCAAACC 60
|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||
Sbjct 1 CCTCTTCCGTTGCCTTTTCGCTTTCTCCGTACACTTGGTCTTCCTTCTCGCGATCAAACC 60
Query 61 CTAGGTCCCGCCATTGTTGGTCCCAGACTTCAATCGAAGCTCCAATTTCACTAATTTCAG 120
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CTAGGTCCCGCCATTGTTTGTCCCAGACTTAAATCGAAGCTCCAATTTCACTAATTTCAG 120
Query 121 GTGTTGT-TTATTCTCTGGAAGTTG-GCGATACAATGGATTCTACTGCTGCAACC-AAAC 177
||| | || |||| | | || ||||| ||||||||| ||||| |||| | |
Sbjct 121 GTG-AATCTTCTTCT-AGCTTGGTGATAGATACTATGGATTCTGTTGCTG-AACCTAGCC 177
Query 178 GTGTTGTTGACCCACTTACTGTTGGGAGTGCGTTTGTCAATCAGTACTACTACATTTTCT 237
|||||||||||||||||||||||||| ||||||||||| |||||||||| | |||| |
Sbjct 178 CTGTTGTTGACCCACTTACTGTTGGGAATGCGTTTGTCAGTCAGTACTACCATGTTTTGT 237
Query 238 GTAACATGCCTGAGCATCTGCCCCGGTTTTATCAAGAGATCAGTAGAGTTGGCCGTGTTG 297
||||||||||||||||||||||||||| ||||| |||||||||| |||||| |||||||
Sbjct 238 ATAACATGCCTGAGCATCTGCCCCGGTTCTATCACGAGATCAGTAAAGTTGGGCGTGTTG 297
Query 298 GACAGGACGGAGTCATGCGTGATTTCTCCACTTTTCAAGGTATAAGTGAGGAGCTTAAGA 357
|||||||||||||||||| ||||||| || || | ||||||| ||||||||||||||
Sbjct 298 GACAGGACGGAGTCATGCAAAATTTCTCTACCTTGGAGGGTATAACTGAGGAGCTTAAGA 357
Query 358 GACTGACTTATGGAGATTGCAACTCGGCTGAGATAACCAGTTATGATACTCAAGAGTCTC 417
|||||||||| | || || |||||||||||||||||||||||||| |||| |||||
Sbjct 358 CACTGACTTAT-G-GA----AATTCGGCTGAGATAACCAGTTATGATACCCAAGCGTCTC 411
Query 418 ACAATGGGGGTTTCCTTC-TCTTC-GTTACTGGATACTTCACTCTAAACGAGAGATCGAG 475
||||||||||||||| || || | ||||||||||||||||||||||| ||||| |||||
Sbjct 412 ACAATGGGGGTTTCC-TCGTC-GCTGTTACTGGATACTTCACTCTAAATGAGAGGTCGAG 469
Query 476 AAGGAAATTCACCCAAACTTTTTTCCTTGCCCCGCAAGAAA-AGGGTTTCTTTGTTCTGA 534
||||||||||||||||||||||||||||| |||||||||| ||| || ||||||||||
Sbjct 470 GAGGAAATTCACCCAAACTTTTTTCCTTGCTCCGCAAGAAATTGGG-TTATTTGTTCTGA 528
Query 535 ATGACATCCTCAGATTTGTTAATGATGATGCTAAGGATAATGTTCCAGAGACCATAGATG 594
||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |
Sbjct 529 ATGACATCCTCAGATTTGTCAATGATGATGCTAAGGATACTGTTCCAGAGACCATAGAAG 588
Query 595 GGGAAGTTGTTTCTGGGATAAACTCTACAACACCCACTATTATCAATGGC-ATGAAGGGT 653
|||||||||||||||||||||||||||||| ||||| | |||| |||||| || |||||
Sbjct 589 GGGAAGTTGTTTCTGGGATAAACTCTACAAGACCCAGTGTTATTAATGGCAAT-AAGGGC 647
Query 654 TCGGAGCAAGCTGCATGTGTTTCAGTGAATCCTGTTTGTAAGGAAGTGTCCAAACCCTTG 713
||||||||||||||||||||||| ||||||||||||| |||||||||||| |||||||||
Sbjct 648 TCGGAGCAAGCTGCATGTGTTTCGGTGAATCCTGTTTCTAAGGAAGTGTCTAAACCCTTG 707
Query 714 GATAATGAGAATGCTAAGGATAATGTTCTGGTACCTGAGATTGCT-AATGAAGTTGCAAG 772
|| ||||||||||||||||||||||||||||||||||||||| | ||||||||||| ||
Sbjct 708 AATGATGAGAATGCTAAGGATAATGTTCTGGTACCTGAGATTG-TCAATGAAGTTGC-AG 765
Query 773 -GACTGAGATAACTTGCAAAGAAGTTGCAGATGATTCACAGAAAAATTATGACCCTGATG 831
|| |||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 766 AGATTGAGATAACTCGCAAAGAAGTTGCAGATGATTCACCGAAAAATTATGACCCTGATG 825
Query 832 ATGGACTTGCAGATGCTCCCAAGAAATCCTATGCCTCTGTGTTGAAGGTTACGAAAGATA 891
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 ATGGACTTGAAGATGTTCCCAAGAAATCCTATGCCTCTGTGTTGAAGGTTACGAAAGATA 885
Query 892 AATTTGGAGTTCCAGCTGTCTCTTTACCTTCTCCAAAGAAGATACCTAAAGACCAAGAAC 951
||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 886 AATCTGGAGTTCCAGCTGGCTCTGTACCTTCTCCAAAGAAGATACCTAAAGACCAAGAAC 945
Query 952 ATCAAGCGCCTTCAGATCCTTCTACAGGCCAGATACTCAAAGACCAAGGTCAACAAGCAT 1011
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 946 ATCAAGCGCCTTCAGATCCTTCTACAGGCCAGATACTCAAAGACCAAGGTCAACAAGCAT 1005
Query 1012 CTTCAGATCCTTCTCAAGTGATAGAATCTGATACAGTTTCTGAGTCTGTTGATGCTTCTG 1071
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1006 CTTCAGATCCTTCTCAAGTGATAGAATCTGATACAGTTTCTGAGTCTGTTGATGCTGCTG 1065
Query 1072 AAAATGGGCACAATCAGGAAGCGGTAGCTGAGGGTACATCTATTTATGTGAGACATCTTC 1131
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1066 AAAATGGGCACAATCAGGAAGCGGTAGCTGAGGGTACATCTATTTATGTGAAACATCTTC 1125
Query 1132 CTTTTAATGCCAACATTGACATGCTTGAGGCTGAATTTAAGCAATTTGGAGCTATTACCA 1191
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1126 CTTTTAATGCCAACATTGACATGCTTGAGGCCGAATTTAAGCAATTTGGAGCCATTACCA 1185
Query 1192 ATGGTGGGATTCAAGTCATAAATCAAAGGGGCCTTGGTTATCCTTATGGTTTTGTTGAGT 1251
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1186 ATGGTGGGATTCAAGTCATAAACCAAAGGGGCCTTGGTTATCCTTATGGTTTTGTTGAGT 1245
Query 1252 TTGAGGAGGCAGATGCTGCCCACAGAGCAATAGAGGCTTCACCTGTGAAGATTGGTGGAC 1311
|||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||
Sbjct 1246 TTGAGGAGGCTGATGCTGCCCACAGAGCAATAGAGGCTTCACCTCTGATGATTGGTGGAC 1305
Query 1312 TGAGAGCTTTTGTGGAGGAGAAGCTATCGACATCAAGAGGTAAAAGAGGAAATGGAAACG 1371
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 1306 AGAGAGCTTTTGTGGAGGAGAAGCTATCGACATCAAGAGGTAACAGAGGAAATGGAAATG 1365
Query 1372 -TGGGATACGGAAATAGGAATGTGGGAGTGGGAATGAGAGGAAGAGGAAGTTATGGATAT 1430
||| |||||||||||| ||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1366 GTGG-ATACGGAAATAGAAATGTTGGAGTGGGAATGAGAGGAAGAGGAGGTTATGGATAT 1424
Query 1431 GGCTATGATTACAGGAGGGGAGGTCGAGGTCCTGGAGGAGGAGGAAGGTCTTTTAACCGT 1490
||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1425 GGCTACGATTACAGGAGGGGAGGTAGAGGTTCTGGAGGAGGAGGAAGGTCTTTTAACCGT 1484
Query 1491 AGAGGCAATGAATACGTCGCCAGCATCAACTCGTACTAGAGCGG--ATTTGGGTTCTCTT 1548
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||
Sbjct 1485 AGAGGCAATGAATACGTCGCCAGCATCAACTCGTACTAGAGCGGGGATT-GGGTTCTTTT 1543
Query 1549 GTGGCGGATAATTGATTTTTGGAATGGTGGAAAGAAGATGGTAGCAAGACAGACAGAATT 1608
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 1544 GTGGTGGATAATTGATTTTTGGAATGGTGGAAAGAAGATGGTAGCAAGAAAGACAGACTT 1603
Query 1609 GGTAGATATCTCTCTCTCGGGTATTCAAATATTAGT 1644
|||||||||||||||||||| |||||| ||||||||
Sbjct 1604 GGTAGATATCTCTCTCTCGGTTATTCATATATTAGT 1639
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5