BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48655.2
Length=1105
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494930 jgi|Araly1|494930|fgenesh2_kg.8__746__AT5G48655.3 1496 0.0
> Ahg494930 jgi|Araly1|494930|fgenesh2_kg.8__746__AT5G48655.3
Length=1361
Score = 1496 bits (810), Expect = 0.0
Identities = 888/926 (96%), Gaps = 4/926 (0%)
Strand=Plus/Plus
Query 165 AGGTACAAAGGTTA-GTTACTTTGAGCTGAAAGATGAACACGTC-AGAGGTGAGAGTACC 222
|||||||||||||| |||||||||||||||||||||||| || | |||||||||||||||
Sbjct 437 AGGTACAAAGGTTAGGTTACTTTGAGCTGAAAGATGAACTCG-CAAGAGGTGAGAGTACC 495
Query 223 TCGAGGAAATCGACGGAGGAAAGCTGTGATTGATCTGAATGCGGTACCTGTTGATCAAGA 282
|||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||
Sbjct 496 TCGAGGAAATCGACGGAGGAAAGCTGTGATTGATCTGAATGCAGTACCTGGAGATCAAGA 555
Query 283 AGGGACCTCTGCTTCTGTTAGAACTCTTACGGTGCCTATTACACCGTCTCAGCCTGCTCC 342
|||||||||||||||||| ||| ||| ||||||| ||| |||||||||||||||||||||
Sbjct 556 AGGGACCTCTGCTTCTGTAAGATCTCCTACGGTGACTACTACACCGTCTCAGCCTGCTCC 615
Query 343 TACGATGATTGATGTCGATGCTATTGAGGATGATGTTATTGAATCATCCGCTAGTGCTTT 402
||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 616 TACAATGATTGATGTCGATGCTATTGAAGATGATGTTATTGAATCATCCGCAAGTGCTTT 675
Query 403 TGCTGAAGCTAAAAGCAAATCAAGAAATGCACGTCGGAGACCTTTGATGGTTGATGTAGA 462
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 676 TGCTGAAGCTAAAAGCAAATCGAGAAATGCACGTCGGAGACCTTTGATGGTTGATGTAGA 735
Query 463 GTCAGGAGGTACGACTAGATTCCCTGCCAACATAAGCAACAAACGCAGAAGGATTCCTTC 522
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 736 GTCAGGAGGTACGACTAGATTGCCTGCCAACATAAGCAACAAACGCAGAAGGGTTCCTTC 795
Query 523 TAGTGAATCTGTCATCGACTGTGAGCATGCCTCTGTAAATGATGAAGTCAACATGTCTTC 582
||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 796 TAGTGAACCTGTCATCGACTGTGAGCATGCCTATGTAAATGATGAAGTCAACATGTCTTC 855
Query 583 GAGAGTGTCTAGATCAAAGGCTCCAGCTCCTCCACCAGAAGAGCCAAAGTTTACATGTCC 642
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 856 GAGAGTGTCTAGATCAAAGGCTCCAGCTCCTCCACCAGAAGAGCCAAAGTTTACATGCCC 915
Query 643 AATCTGCATGTGTCCCTTTACGGAGGAGATGTCAACCAAGTGCGGTCACATCTTCTGCAA 702
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 916 AATCTGCATGTGTCCCTTTACGGAGGAGATGTCAACCAAGTGCGGTCACATCTTCTGCAA 975
Query 703 GGGATGTATAAAGATGGCAATATCTCGCCAGGGCAAATGCCCTACTTGTAGGAAAAAGGT 762
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 GGGATGTATAAAGATGGCAATATCTCGCCAGGGCAAATGCCCTACTTGTAGGAAAAAGGT 1035
Query 763 TACTGCAAAAGAGCTGATTCGAGTTTTCCTTCCAACCACTAGATGAGTGGTCCGGCAACA 822
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1036 TACTGCGAAAGAGCTGATTCGAGTATTCCTTCCAGCCACTAGATGAGTGGTCCGGCAACA 1095
Query 823 TCACCAGCCACCCTGTCTAATGGTTTATCAGACTATCCTCCTATTCACTTTGGAACATTG 882
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1096 TCACCAGCCACCCTGTCTAATGGTTTGTCAGACTATCCTCCTATTCACTTTGGAACATTG 1155
Query 883 AAGGGACTTCGTTGACTTGGTATTTTTGAATATTTTGCTTTGTTGGAAGAGAAATATTCA 942
||||||||| ||||||| || ||||||||||||||||||| |||||||||||||||||
Sbjct 1156 AAGGGACTTTATTGACTTCATAATTTTGAATATTTTGCTTTGGTGGAAGAGAAATATTCA 1215
Query 943 GTGATCAAGAAGCCAGAAGGCCCTATCATTCGATGGATATCATTGGTAATAACTCTTTGT 1002
|| ||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||
Sbjct 1216 GTCATCAAGAAGCCAGAAGGCCCTATCATTTGATGGATATCATTGGTAATAAGTCTTGGT 1275
Query 1003 TTTT-AGTTGTTGTTCTATGTAATTTAGGTCTCTGCAAACCTCTCAGTCGATACTCTTCT 1061
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1276 TTTTTAGTTGTTGTTCTATGTAATTTAGGTCTCTGCAAACCTCTCAGTTGATACTCTTCT 1335
Query 1062 CTCTTGATAGATGATAAGATATATGG 1087
|||||||||||||| |||||||||||
Sbjct 1336 CTCTTGATAGATGAAAAGATATATGG 1361
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41172750360
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5