BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48657.1
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494931 jgi|Araly1|494931|fgenesh2_kg.8__747__AT5G48657.2 907 0.0
> Ahg494931 jgi|Araly1|494931|fgenesh2_kg.8__747__AT5G48657.2
Length=718
Score = 907 bits (491), Expect = 0.0
Identities = 578/620 (93%), Gaps = 5/620 (1%)
Strand=Plus/Plus
Query 555 AATCGTCCACACGTGCCCAAATTCGGAGACTGGACCGAAGATGCTCC---ATTCACGGTC 611
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 32 AATCGTCCACACGTGCCCAAATTCGGAGACTGGACCGAAGATGCTCCTGCATTCACGGTC 91
Query 612 GTGTTCGAAAAAGCAAGCAAGAGCAAGAAAAATATGAACGTGGCCAACCCGAATGAATAT 671
||||||||||||| ||||| ||||||||| ||||||||||| |||||||||||||||||
Sbjct 92 GTGTTCGAAAAAGTGAGCAAAAGCAAGAAAGATATGAACGTGTCCAACCCGAATGAATAT 151
Query 672 CCAGATATGAATCCAAACGCTGCACAAAATCGAAATATGTCTAGGCCTGACCAACAACCA 731
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 152 CCAGAAATGAATCCAAACGCTGCACAAAATCGAAATATGTCTAGGCATGACCAACAACCA 211
Query 732 CCAAACCATAATGTTAGACCAAGACATGAAAGATTCAATAGCAGAGACGAAACCGAATTC 791
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 212 CCAAACCATCATGTTAGACCAAGACATGAAAGATTCAATAGCAGAGAAGAAACCGAATTC 271
Query 792 AGACCGTCTCCTGCACACAATGAAAGAAACAACAGAGTTAGATCAGTTCCTCCCACACCA 851
|||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 272 AGACCGTCTCCTATACACAATGAAAGAAACAAAAGAGTTAGATCAGTTCCTCCCACACCA 331
Query 852 GAAACATACAACCATCAAACATATGGTGGAGGTGGCAGATCAATGGGAAATCCAACAGAA 911
||||||| |||||||||| ||||||||||||| |||||||||||||||||||| | |||
Sbjct 332 GAAACATCCAACCATCAATCATATGGTGGAGGAGGCAGATCAATGGGAAATCCGTCGGAA 391
Query 912 ATAAATAGACGGCAATCACGTGATCATGTCCCGGCGCGGCCAATACGCAATCTTAGAGGG 971
| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 392 ACAAATAGACGGCAATCACGTGATCATGTCCCGGTACGGCCCATACGCAATCTTAGAGGT 451
Query 972 CAAAGTAGTGAAAGGGTGGCGACTATTCCTCCATTTCCTGGAACGGGTTCTAACATGGAA 1031
||||||||||||||||||||||||||||| || ||||||||| | ||||| ||||||||
Sbjct 452 CAAAGTAGTGAAAGGGTGGCGACTATTCCACCGTTTCCTGGATCTGGTTCGAACATGGAG 511
Query 1032 AATCAGAGTTACACACTTATCTTTGACAAAGTGAAAGAAGATAGGAACCAAGCGAGATCT 1091
|||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||
Sbjct 512 GATCAGAGTTACACACTCATCTTTGACAAAGTGAAAGAAGATAGGAACCAAGCAAGGTCT 571
Query 1092 TAC-AATGGAACCGATCATAGCACCCCGACTCGACCCATCATCGACCAACATCATCAACC 1150
| | |||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 572 T-CTAATGGAACCGATCATAGCACCCCGACTCAACCCATGATCAACCAACATCATCAACC 630
Query 1151 ATTACCTTCTAGTCCCAAGG 1170
|||||||||||||||||||
Sbjct 631 TTTACCTTCTAGTCCCAAGG 650
Score = 115 bits (62), Expect = 9e-25
Identities = 69/72 (96%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 1241 AGGGTTGCTGTTTTCCTCCATGGAGCCGAAAGGGAAGCTAATGAAGATGATCAtttccct 1300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 648 AGGGTTGCTGTTTTCCTCCATGGAGCCGAAAGGGAAGCTAATGAAGATGATCATATCCCT 707
Query 1301 tt-tttacataa 1311
|| ||| |||||
Sbjct 708 TTCTTT-CATAA 718
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55535577210
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5