BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48660.1
Length=1210
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494932 jgi|Araly1|494932|fgenesh2_kg.8__748__AT5G48660.1 1698 0.0
> Ahg494932 jgi|Araly1|494932|fgenesh2_kg.8__748__AT5G48660.1
Length=1138
Score = 1698 bits (919), Expect = 0.0
Identities = 1075/1147 (94%), Gaps = 23/1147 (2%)
Strand=Plus/Plus
Query 1 ACTGAACTTTTCTCAGAT-C--CTTCTTCACTCTTCAGTGTTTCCTCTCTCCTACTAAAA 57
|||||||||||||||||| | |||||||||| ||||||||||| |||||||||||||||
Sbjct 1 ACTGAACTTTTCTCAGATCCTTCTTCTTCACTATTCAGTGTTTCATCTCTCCTACTAAAA 60
Query 58 CCTTCTTCAG-TTTCTTGAATTCAATTCTTCTCTTAGTCTTCTCCATTTTATGATTTCTT 116
|||||||| | |||||||| |||||||||||| |||||| ||||||||||||||||||||
Sbjct 61 CCTTCTTC-GATTTCTTGACTTCAATTCTTCTTTTAGTCCTCTCCATTTTATGATTTCTT 119
Query 117 GGTGGTATCAAGAACTCAGTGACCGATTTCTTGAAAAAGCTAATGAGTTTTAGATAAACT 176
|||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||| |
Sbjct 120 GGTGGTATCAAGAACTGAGTGACCAATTTCTTGAAAAAGCAAATGGGTTTTAGATAAATT 179
Query 177 CGTTGCTTGCTTTCTCTTCATTCTCCGATCTGGGTTTTGGTTTTAAATC-CATACCCAAG 235
||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 180 CGTTGCTTGCTTTCTCTTCGTTCTCCGATCTGGGTTTTGGTTTT-AATCTCATACCCAAG 238
Query 236 TAGCAAAACTAGAAGACAAGAGCTATAGAAATTAGGGTTTAGAGTTTACCTTATTGGTGA 295
|||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||
Sbjct 239 TAGCAAAACTTGAAGACAAGAG-T-GAGAAATTAGGGTTTAGAGTTTACCTTATTGGTGA 296
Query 296 ATTGTGGTAAAGGAACAAACTTTAGGGGGAGAACTCATTCAGACATGATTCAGTTACTGT 355
|||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct 297 ATTGTGGTAAAGGAACAAACTTTA-GGGGA-AA---ATTCAGACATGATTCAGTTACTGT 351
Query 356 TTCTAGTTCTATTTGTGGAAGGTGCGATTGCATTCTTACTGTTGATAAAGATTGGTCCTT 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TTCTAGTTCTATTTGTGGAAGGTGCGATTGCATTCTTACTGTTGATAAAGATTGGTCCTT 411
Query 416 TGAGAGAGCTTGTGATTAAAAGTCTTGACCAGATGAAGATGGGTAAAGGTCCTGCCACTG 475
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 412 TGAGAGAGCTTGTGATTAAAAGCCTTGACCAGATGAAGATGGGTAAAGGTCCTGCCACTG 471
Query 476 TGAAAACAATCGCTGGAACTATGTCTGTTATTCTCTTTTCTAATCTTATGAGCATTGTCA 535
||||||| || |||||||||||||||||||| ||||| |||||||| |||||||||||||
Sbjct 472 TGAAAACCATTGCTGGAACTATGTCTGTTATACTCTTCTCTAATCTCATGAGCATTGTCA 531
Query 536 AGATCCAGAATAAAGGTGCAAAGCTTGGGACAATGTCTCCTATGGATCAGGTTCTTTGGA 595
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 AGATCCAGAACAAAGGTGCAAAGCTTGGGACAATGTCTCCTATGGATCAGGTTCTTTGGA 591
Query 596 GAACACACTTGCTTGAAGCTTCTTTATTGGGAGTCGTACTTTTTCTCGGCTTTATAATTG 655
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 592 GAACACACTTGCTTGAAGCTTCTTTATTGGGAGTCGTACTTTTTCTCGGCTTCATAATTG 651
Query 656 ACAGAATGCATCACTACCTCAGAAAGCTAATCAATTTGAGAAGCAACGTCGGATCATCga 715
||||||||||||||||||||||||||||||||||||| |||||||| || || |||||||
Sbjct 652 ACAGAATGCATCACTACCTCAGAAAGCTAATCAATTTAAGAAGCAATGTTGGGTCATCGA 711
Query 716 aagaagaacttgaacagctccagaaagaaagaaccgaactgaaggagaaagaggagaaag 775
|||| |||||||||||||| |||||||||||| ||| |||||||||||||||||| ||||
Sbjct 712 AAGATGAACTTGAACAGCTTCAGAAAGAAAGAGCCGGACTGAAGGAGAAAGAGGATAAAG 771
Query 776 CATCCAAGGAAATCAAGCAGTTGCAAGTAAAATTGTCATCTATTACagagagactaaaga 835
|||||||||||||||||||| |||||| |||| ||||||||||| |||||||||||| |
Sbjct 772 CATCCAAGGAAATCAAGCAGCTGCAAGAAAAACTGTCATCTATTTTAGAGAGACTAAAAA 831
Query 836 aagcagagactgagtcaaaagagaaagagaagaaaCTCGAAACTGCTGAAACACATGTTA 895
|||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| |
Sbjct 832 AAGCAGAGACTGAGTCGAAAGAGAAAGAGAAGAAACTCGAAACCGCTGAAACCCATGTCA 891
Query 896 CGGCGTTACAGAAACAGTCTGCAGAGCTGCTTCTAGAGTATGATAGATTGCTAGAAGATA 955
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 CGGCGCTACAGAAACAGTCTGCAGAGCTGCTTCTAGAGTATGATAGATTGCTAGAAGATA 951
Query 956 ACCAACATCTCCAAAGCCAAATCTTGGGGAAAACCAAGAGCTGATGTTAAGATTGTCTGG 1015
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 952 ACCAACATCTCCAAAGCCAAATCTTGGGGAAAACCAAGAGCTGAGGTTAAGTTTGTCTGG 1011
Query 1016 TGTTATTTAACAATG---A----GAGA--GTTTATAGAGTATTGTAGTTGCAGGAATTCT 1066
||| ||||||| ||| | |||| |||||| ||||||||||||||||||| ||||
Sbjct 1012 TGTCATTTAACCATGGTGAAAAAGAGAAAGTTTATGGAGTATTGTAGTTGCAGGAGTTCT 1071
Query 1067 TGCAACATTTTTGTTTTTAGTGTATGGATATTGAATGGTTCTTGTTTCTTCTCAAGTCTT 1126
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 1072 TGCAACATTTTTGTTTTTAGTATATGGATATTGAATGGTTATTGTTTCTTCTCAAGTCTT 1131
Query 1127 TGGAATG 1133
|||||||
Sbjct 1132 TGGAATG 1138
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45175656645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5