BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT5G48670.1

Length=1126
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg903441 jgi|Araly1|903441|Al_scaffold_0003_569                     119    5e-26


> Ahg903441 jgi|Araly1|903441|Al_scaffold_0003_569
Length=708

 Score =  119 bits (64),  Expect = 5e-26
 Identities = 158/202 (78%), Gaps = 11/202 (5%)
 Strand=Plus/Plus

Query  696  ACAATTTCGTCATCCGGCGGCTCAACATGTTGGACTT-AATGAGCAACCTCAAAATCTAA  754
            |||||||||||||||  |  ||| ||| |||||| ||  ||||| || |||  | | | |
Sbjct  387  ACAATTTCGTCATCCATCATCTCCACAAGTTGGA-TTCTATGAGAAATCTCGGAGTTTGA  445

Query  755  ATCTGAATTTAAATCAGAACT-ATAATCA-AA--ATCAAGAA-TGGTTTATGGAAATGAT  809
            |||| ||| ||||| | || | ||||||| ||  | ||| || |||||||||||||||||
Sbjct  446  ATCTAAATCTAAATGATAA-TCATAATCAGAACCAACAA-AAGTGGTTTATGGAAATGAT  503

Query  810  GAACCATCCTGAGCAAATGAGGTAT-CAGACAGAGCAAATGGGATATCAATTCATGGATG  868
            |||||||||||| ||| |||  ||| ||| | |||||||  || | || ||| |||||||
Sbjct  504  GAACCATCCTGATCAATTGAATTATGCAG-CTGAGCAAAAAGGTTTTCCATTTATGGATG  562

Query  869  ATAACCACCACAACCACATCCA  890
            |||| ||||||||| ||| |||
Sbjct  563  ATAATCACCACAACAACAACCA  584



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 41973331617


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5