BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48680.1
Length=1052
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494934 jgi|Araly1|494934|fgenesh2_kg.8__750__AT5G48680.1 1216 0.0
Ahg928387 jgi|Araly1|928387|scaffold_300844.1 283 2e-75
> Ahg494934 jgi|Araly1|494934|fgenesh2_kg.8__750__AT5G48680.1
Length=980
Score = 1216 bits (658), Expect = 0.0
Identities = 810/881 (92%), Gaps = 19/881 (2%)
Strand=Plus/Plus
Query 97 AGGGTTTAGGG-T-TTCATTTATTTTGTTTTCCCCAATTCGATATGTATTCTGATCTAGT 154
||||||||||| | || ||| |||||| |||||| ||||||||||||||| |||| |||
Sbjct 53 AGGGTTTAGGGTTCTTTTTTTTTTTTGTCTTCCCCCATTCGATATGTATTCAGATCAAGT 112
Query 155 GGTGGCTGAAACTAAAATCAGCAAAACGTTCAAGAACCGTCTCAATGGTGGTTCCGGTGA 214
|||||||||||||| |||||||||| |||| |||||||| |||||||| | |||||||||
Sbjct 113 GGTGGCTGAAACTAGAATCAGCAAATCGTTAAAGAACCGCCTCAATGGCGCTTCCGGTGA 172
Query 215 CTTCTCTTCTCGCGGCAAACAACAACAAGTCACAAGGAAGAGAGGAAGGCAAGATGATGA 274
| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 173 CGTCTCTTCTCGCGGCAAACAACAACAAGTCACGAGGAAGAGAGGAAGGCAGGATGATGA 232
Query 275 TAAGTGGGAGCATGATCTTTTCGAAGACGATGACGAGCCTCGGCTTTCAAAACGTAGAGT 334
|||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||| |
Sbjct 233 TAAGTGGGAGCATGATCTTTTCGATGACGACGACGTGCCTCGGCTTTCAAAACGCAGATT 292
Query 335 TGACCCTAAAGATCTTCGCTTGAAGCTCCAAAAGAAACGTCATGGCTCGCAAATTGGTGG 394
||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 293 TGATCCTAAAGATCTCCGCTTGAAGCTCCAAAAGAAACATCATGGCTTGCAAATTGGTGG 352
Query 395 ACGAGTATTTAGTGTAAGCGT-GGCGGATCTAC-GAGATAAGTTATCCAGGACAGTGAAT 452
|||||| |||||| | ||||| || |||||||| || ||||| ||||| |||||||||||
Sbjct 353 ACGAGTGTTTAGTTTGAGCGTCGG-GGATCTACGGA-ATAAGCTATCCGGGACAGTGAAT 410
Query 453 CCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCCATAAAGAAGGTTTCAGTG 512
||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
Sbjct 411 CCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCTATAAAGAAGGTTGCAG-G 469
Query 513 GG-AACCAAACCCGAGACTAGAGCGGCTCCGAATAGAGCT-ACCAAGAAGGATCCACAGC 570
|| ||||||| ||||||||||| |||||||||| |||| | | ||||||| | |||||||
Sbjct 470 GGTAACCAAATCCGAGACTAGAACGGCTCCGAACAGAG-TAATCAAGAAGAAACCACAGC 528
Query 571 AGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACTG 630
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 529 AGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACCG 588
Query 631 CATTTCAAGTGGAAGAAGTTGATATGGATGCTCTTAGGCATATGACAGATGATGACCTCA 690
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 589 CATTTCAAGTGGAAGAAGTTGATATGGATGCTCTCAGGCATATGACAGATGATGACCTCA 648
Query 691 AAGCTTTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCTTTGGGAGATAACC 750
||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 649 AAGCTCTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCCTTGGGATCTAAAC 708
Query 751 GTGGATAGTCCAGC-T-TCGAGCTTAGGTGCATGATGATACACATCTCGGATATTGTCAG 808
|||||||||||||| | || ||||||||||||||||||| |||||| ||||||||||||
Sbjct 709 GTGGATAGTCCAGCTTCTCAAGCTTAGGTGCATGATGAT--ACATCTGGGATATTGTCAG 766
Query 809 AAAGATGCTGCATTTTGACTTTTCATTGTCTTTTTATCTTTCTCATATGTATCTCAAGAG 868
||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct 767 AAAGATGCTGCATTTTGACTTTTCATTGTCTTTTT-CCTTTCTCATCTGTATCTCAAGAG 825
Query 869 ACAACAAGTAGTTAGAGTTTTGAGATTAAACAGTTGTAACCTTTTAACATAGAGAGA--- 925
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 826 ACAACAAGTAGTTAGAGTTTTGAGATTAAACAGTTGTAACCTTTTAACATAGAGAGAGAG 885
Query 926 -CAAGAGGAGCAATGTTGGAATGTGTTTAAGATCTTGCTTC 965
||||| ||||||||||| |||||| |||||||||||||||
Sbjct 886 ACAAGAAGAGCAATGTTGCAATGTGCTTAAGATCTTGCTTC 926
Score = 63.9 bits (34), Expect = 2e-09
Identities = 40/43 (93%), Gaps = 0/43 (0%)
Strand=Plus/Plus
Query 28 TTAGGGTTTTGTAACTTTGGAGAGCTCAAGTTCGGTTTCGTTC 70
||||||||||||||||||||||||||||| ||| ||||| |||
Sbjct 2 TTAGGGTTTTGTAACTTTGGAGAGCTCAACTTCTGTTTCATTC 44
> Ahg928387 jgi|Araly1|928387|scaffold_300844.1
Length=652
Score = 283 bits (153), Expect = 2e-75
Identities = 482/632 (76%), Gaps = 58/632 (9%)
Strand=Plus/Plus
Query 138 ATGTATTCTGATCTAGTGGTGGCTGAAACTAAAATCAGCAA-AACGTTCAAGAACCGTCT 196
|||||| ||||| | ||| |||||| || || ||| || |||| ||| | ||| |
Sbjct 21 ATGTATGCTGATAAACTGGAGGCTGAGTCTGGAAGCAGGAAGGTCGTT-AAGGATCGTAT 79
Query 197 CAATGGTGGTTCCGGTGACTTCTCTTCTCGCGGCAAACAACAACAAGTCACAAGGAAGAG 256
|||||| ||||| || ||| ||||||||||| | | |||||| || |||||||
Sbjct 80 CAATGGCGGTTCTGGCGACATCTCTTCTCGC-G-----TGCGACAAGTGACTGGGAAGAG 133
Query 257 AG-GAAGGCAAGATGATGATAAGTGGGAGCATGATCTTTTCGAAG-ACGATGACGAGCCT 314
| ||||| || || || || |||||||||||||||||| || | | |||| | |||
Sbjct 134 -GCAAAGGC-AG--GACGACAAATGGGAGCATGATCTTTTC--AGTA-G-TGACAAACCT 185
Query 315 CGGCTTTCAAAACGTAGAGTTGACCCTAAAGATCTTCGCTTGAAGCTCCAAAAGAAACGT 374
| |||||||| || |||||||| |||| ||||||||| |||||||||||||||| || |
Sbjct 186 CAACTTTCAAATCGCAGAGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACAT 245
Query 375 CATG-GCTCGCAAATTGGTGGACGAGTATTTAGTGT-AAGCGTGGC-GGATCTACGAGAT 431
|||| | || |||| |||| |||| | | || | | |||| || |||| |||| ||
Sbjct 246 CATGTG-TCTCAAA---GTGGGCGAGAAGCTGGT-TCAGGCGT-GCGGGATTTACGGGAA 299
Query 432 AAGTTATCCAGGACAGTGAATC--C-A-CAAACAA-A--GA----ACAGTA---AAAG-G 476
||| | || ||||| |||||| | | |||| || | || || | |||| |
Sbjct 300 AAGCTCTCTGGGACAATGAATCTGCAACCAAAAAACAGTGACGCGCCAAAACCTAAAGCG 359
Query 477 GAGGCTGTTAGACC-AGCCATAAAGAAGGTTTCAGTGGGAAC-CAAACCCGAGACTAGAG 534
||||||| |||||| || || ||| | | | || | || ||| | |||||||||
Sbjct 360 GAGGCTGCTAGACCAAG-TATGAAG-A-G---C-GTAGCTACTGAAA-CAGAGACTAGAA 411
Query 535 CGGC-TCCGAAT-AGAGCTACCAAGAAG-GATCCACAGCAGAATGATGCATCGGTTGATA 591
| ||| | | | |||||||| |||| || |||||||| |||| |||| |||||||
Sbjct 412 AAACTTCC-ACTCA-AGCTACCAGGAAGAAAT-CACAGCAGGCTGATTCATCTGTTGATA 468
Query 592 GCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACTGCATTTCAAGTGGAAGAAGTTG 651
|||| ||||||||||||||||| ||||||||||| || || |||||||||||||||||||
Sbjct 469 GCTTTCTGGAATCATTGGGTCTAGAGAAATATTCAACAGCTTTTCAAGTGGAAGAAGTTG 528
Query 652 ATATGGATGCTCTTAGGCATATGACAGATGATGACCTCAAAGCTTTGCTCATACCAATGG 711
||||||||||||| | |||||||||||||||||||||||| || |||||||||||||||
Sbjct 529 ATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCCATGCTCATACCAATGG 588
Query 712 GACCTAGGAAGAAGATACTTCTTGCTTTGGGA 743
| || |||||||||||||| ||||||||||||
Sbjct 589 GTCCGAGGAAGAAGATACTGCTTGCTTTGGGA 620
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39152235759
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5