BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT5G48680.1 Length=1052 Score E Sequences producing significant alignments: (Bits) Value Ahg494934 jgi|Araly1|494934|fgenesh2_kg.8__750__AT5G48680.1 1216 0.0 Ahg928387 jgi|Araly1|928387|scaffold_300844.1 283 2e-75 > Ahg494934 jgi|Araly1|494934|fgenesh2_kg.8__750__AT5G48680.1 Length=980 Score = 1216 bits (658), Expect = 0.0 Identities = 810/881 (92%), Gaps = 19/881 (2%) Strand=Plus/Plus Query 97 AGGGTTTAGGG-T-TTCATTTATTTTGTTTTCCCCAATTCGATATGTATTCTGATCTAGT 154 ||||||||||| | || ||| |||||| |||||| ||||||||||||||| |||| ||| Sbjct 53 AGGGTTTAGGGTTCTTTTTTTTTTTTGTCTTCCCCCATTCGATATGTATTCAGATCAAGT 112 Query 155 GGTGGCTGAAACTAAAATCAGCAAAACGTTCAAGAACCGTCTCAATGGTGGTTCCGGTGA 214 |||||||||||||| |||||||||| |||| |||||||| |||||||| | ||||||||| Sbjct 113 GGTGGCTGAAACTAGAATCAGCAAATCGTTAAAGAACCGCCTCAATGGCGCTTCCGGTGA 172 Query 215 CTTCTCTTCTCGCGGCAAACAACAACAAGTCACAAGGAAGAGAGGAAGGCAAGATGATGA 274 | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| Sbjct 173 CGTCTCTTCTCGCGGCAAACAACAACAAGTCACGAGGAAGAGAGGAAGGCAGGATGATGA 232 Query 275 TAAGTGGGAGCATGATCTTTTCGAAGACGATGACGAGCCTCGGCTTTCAAAACGTAGAGT 334 |||||||||||||||||||||||| ||||| |||| |||||||||||||||||| ||| | Sbjct 233 TAAGTGGGAGCATGATCTTTTCGATGACGACGACGTGCCTCGGCTTTCAAAACGCAGATT 292 Query 335 TGACCCTAAAGATCTTCGCTTGAAGCTCCAAAAGAAACGTCATGGCTCGCAAATTGGTGG 394 ||| ||||||||||| |||||||||||||||||||||| |||||||| |||||||||||| Sbjct 293 TGATCCTAAAGATCTCCGCTTGAAGCTCCAAAAGAAACATCATGGCTTGCAAATTGGTGG 352 Query 395 ACGAGTATTTAGTGTAAGCGT-GGCGGATCTAC-GAGATAAGTTATCCAGGACAGTGAAT 452 |||||| |||||| | ||||| || |||||||| || ||||| ||||| ||||||||||| Sbjct 353 ACGAGTGTTTAGTTTGAGCGTCGG-GGATCTACGGA-ATAAGCTATCCGGGACAGTGAAT 410 Query 453 CCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCCATAAAGAAGGTTTCAGTG 512 ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| | Sbjct 411 CCACAAACAAAGAACAGTAAAAGGGAGGCTGTTAGACCAGCTATAAAGAAGGTTGCAG-G 469 Query 513 GG-AACCAAACCCGAGACTAGAGCGGCTCCGAATAGAGCT-ACCAAGAAGGATCCACAGC 570 || ||||||| ||||||||||| |||||||||| |||| | | ||||||| | ||||||| Sbjct 470 GGTAACCAAATCCGAGACTAGAACGGCTCCGAACAGAG-TAATCAAGAAGAAACCACAGC 528 Query 571 AGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACTG 630 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 529 AGAATGATGCATCGGTTGATAGCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACCG 588 Query 631 CATTTCAAGTGGAAGAAGTTGATATGGATGCTCTTAGGCATATGACAGATGATGACCTCA 690 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 589 CATTTCAAGTGGAAGAAGTTGATATGGATGCTCTCAGGCATATGACAGATGATGACCTCA 648 Query 691 AAGCTTTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCTTTGGGAGATAACC 750 ||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| | Sbjct 649 AAGCTCTGCTCATACCAATGGGACCTAGGAAGAAGATACTTCTTGCCTTGGGATCTAAAC 708 Query 751 GTGGATAGTCCAGC-T-TCGAGCTTAGGTGCATGATGATACACATCTCGGATATTGTCAG 808 |||||||||||||| | || ||||||||||||||||||| |||||| |||||||||||| Sbjct 709 GTGGATAGTCCAGCTTCTCAAGCTTAGGTGCATGATGAT--ACATCTGGGATATTGTCAG 766 Query 809 AAAGATGCTGCATTTTGACTTTTCATTGTCTTTTTATCTTTCTCATATGTATCTCAAGAG 868 ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| Sbjct 767 AAAGATGCTGCATTTTGACTTTTCATTGTCTTTTT-CCTTTCTCATCTGTATCTCAAGAG 825 Query 869 ACAACAAGTAGTTAGAGTTTTGAGATTAAACAGTTGTAACCTTTTAACATAGAGAGA--- 925 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 826 ACAACAAGTAGTTAGAGTTTTGAGATTAAACAGTTGTAACCTTTTAACATAGAGAGAGAG 885 Query 926 -CAAGAGGAGCAATGTTGGAATGTGTTTAAGATCTTGCTTC 965 ||||| ||||||||||| |||||| ||||||||||||||| Sbjct 886 ACAAGAAGAGCAATGTTGCAATGTGCTTAAGATCTTGCTTC 926 Score = 63.9 bits (34), Expect = 2e-09 Identities = 40/43 (93%), Gaps = 0/43 (0%) Strand=Plus/Plus Query 28 TTAGGGTTTTGTAACTTTGGAGAGCTCAAGTTCGGTTTCGTTC 70 ||||||||||||||||||||||||||||| ||| ||||| ||| Sbjct 2 TTAGGGTTTTGTAACTTTGGAGAGCTCAACTTCTGTTTCATTC 44 > Ahg928387 jgi|Araly1|928387|scaffold_300844.1 Length=652 Score = 283 bits (153), Expect = 2e-75 Identities = 482/632 (76%), Gaps = 58/632 (9%) Strand=Plus/Plus Query 138 ATGTATTCTGATCTAGTGGTGGCTGAAACTAAAATCAGCAA-AACGTTCAAGAACCGTCT 196 |||||| ||||| | ||| |||||| || || ||| || |||| ||| | ||| | Sbjct 21 ATGTATGCTGATAAACTGGAGGCTGAGTCTGGAAGCAGGAAGGTCGTT-AAGGATCGTAT 79 Query 197 CAATGGTGGTTCCGGTGACTTCTCTTCTCGCGGCAAACAACAACAAGTCACAAGGAAGAG 256 |||||| ||||| || ||| ||||||||||| | | |||||| || ||||||| Sbjct 80 CAATGGCGGTTCTGGCGACATCTCTTCTCGC-G-----TGCGACAAGTGACTGGGAAGAG 133 Query 257 AG-GAAGGCAAGATGATGATAAGTGGGAGCATGATCTTTTCGAAG-ACGATGACGAGCCT 314 | ||||| || || || || |||||||||||||||||| || | | |||| | ||| Sbjct 134 -GCAAAGGC-AG--GACGACAAATGGGAGCATGATCTTTTC--AGTA-G-TGACAAACCT 185 Query 315 CGGCTTTCAAAACGTAGAGTTGACCCTAAAGATCTTCGCTTGAAGCTCCAAAAGAAACGT 374 | |||||||| || |||||||| |||| ||||||||| |||||||||||||||| || | Sbjct 186 CAACTTTCAAATCGCAGAGTTGATCCTAGAGATCTTCGTTTGAAGCTCCAAAAGAGACAT 245 Query 375 CATG-GCTCGCAAATTGGTGGACGAGTATTTAGTGT-AAGCGTGGC-GGATCTACGAGAT 431 |||| | || |||| |||| |||| | | || | | |||| || |||| |||| || Sbjct 246 CATGTG-TCTCAAA---GTGGGCGAGAAGCTGGT-TCAGGCGT-GCGGGATTTACGGGAA 299 Query 432 AAGTTATCCAGGACAGTGAATC--C-A-CAAACAA-A--GA----ACAGTA---AAAG-G 476 ||| | || ||||| |||||| | | |||| || | || || | |||| | Sbjct 300 AAGCTCTCTGGGACAATGAATCTGCAACCAAAAAACAGTGACGCGCCAAAACCTAAAGCG 359 Query 477 GAGGCTGTTAGACC-AGCCATAAAGAAGGTTTCAGTGGGAAC-CAAACCCGAGACTAGAG 534 ||||||| |||||| || || ||| | | | || | || ||| | ||||||||| Sbjct 360 GAGGCTGCTAGACCAAG-TATGAAG-A-G---C-GTAGCTACTGAAA-CAGAGACTAGAA 411 Query 535 CGGC-TCCGAAT-AGAGCTACCAAGAAG-GATCCACAGCAGAATGATGCATCGGTTGATA 591 | ||| | | | |||||||| |||| || |||||||| |||| |||| ||||||| Sbjct 412 AAACTTCC-ACTCA-AGCTACCAGGAAGAAAT-CACAGCAGGCTGATTCATCTGTTGATA 468 Query 592 GCTTCCTGGAATCATTGGGTCTCGAGAAATATTCGACTGCATTTCAAGTGGAAGAAGTTG 651 |||| ||||||||||||||||| ||||||||||| || || ||||||||||||||||||| Sbjct 469 GCTTTCTGGAATCATTGGGTCTAGAGAAATATTCAACAGCTTTTCAAGTGGAAGAAGTTG 528 Query 652 ATATGGATGCTCTTAGGCATATGACAGATGATGACCTCAAAGCTTTGCTCATACCAATGG 711 ||||||||||||| | |||||||||||||||||||||||| || ||||||||||||||| Sbjct 529 ATATGGATGCTCTCATGCATATGACAGATGATGACCTCAAGGCCATGCTCATACCAATGG 588 Query 712 GACCTAGGAAGAAGATACTTCTTGCTTTGGGA 743 | || |||||||||||||| |||||||||||| Sbjct 589 GTCCGAGGAAGAAGATACTGCTTGCTTTGGGA 620 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 39152235759 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5