BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48690.1
Length=1309
Score E
Sequences producing significant alignments: (Bits) Value
Ahg949298 jgi|Araly1|949298|scaffold_801185.1 1380 0.0
> Ahg949298 jgi|Araly1|949298|scaffold_801185.1
Length=1019
Score = 1380 bits (747), Expect = 0.0
Identities = 935/1024 (91%), Gaps = 20/1024 (2%)
Strand=Plus/Plus
Query 73 TCTCTGAGATTTTTTAGAAATATGTCAGACGGAACCGAAAATGCTGCAATTGAGGTTAAT 132
||||||||||||||| |||||||| |||| | ||||||||||||||||||||||||||||
Sbjct 1 TCTCTGAGATTTTTT-GAAATATGGCAGAAGAAACCGAAAATGCTGCAATTGAGGTTAAT 59
Query 133 C-ATGGATTGCTTAAGGAGCTTGAAGATATGGGATTCTCTATGGCTCGAGCAGCATGGGC 191
| | ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 60 CGA-GGATTGCTTAAGGAGCTTGAAGATATGGGATTCTCGATGGCTCGAGCTTCATGGGC 118
Query 192 TCTGCATCACTCTGGTAACTCAAGCCTTGAAGCAGCTGTGAATTGGATCATAGATCATGA 251
| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 119 TTTGCATCACTCTGGTAACTCTAGCCTTGAAGCAGCTGTGAATTGGATCATAGATCATGA 178
Query 252 GAACGAATCGCAGTTTGAGAATATGCCTTTGGTGGAGTTTAACATTGAGATTGAGTCTCC 311
|||||| ||||||||||| || |||||||||||||| |||||||||||||||||||||||
Sbjct 179 GAACGATTCGCAGTTTGAAAAAATGCCTTTGGTGGAATTTAACATTGAGATTGAGTCTCC 238
Query 312 AAATCCATCTGATGATACTGCAGAAACTTCTCATGCAAGAGCAAAAGAACT-ATCGGAAC 370
|||||||||| ||||||||||||||| | |||| ||||||||||| ||||| || |||||
Sbjct 239 AAATCCATCTCATGATACTGCAGAAAATGCTCAGGCAAGAGCAAAGGAACTAAT-GGAAC 297
Query 371 AAGCTCGTaaactaagagaagaacaagaaactaaacgcgaaagagaaagagaaaaggaaa 430
||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||||
Sbjct 298 AAGCTCGTAAACTAAGAGAAGAAGAAGAAACTAAAGGTGAAAGAGAAAGAGAAAAGGAAA 357
Query 431 gGATACGAGCAGGGAAAGAGCTGATGGAAACAAAGCGAATTGCGGAAGAAAACGAAAGAA 490
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 358 GGATACGAGCAGGGAAAGAGATGATGGAGACAAAGCGAATTGCGGAAGAAAACGAAAGAA 417
Query 491 AACGGAACATAGCTTTGAGGAAGGCTGAGAAAGATGAGGAGAAAAAGGCAAGAGAGAAAA 550
||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||
Sbjct 418 AACGGAACATAGCTTTGCGGAAAGCTGAGAAAGATGAGGAGAAAAAAGCAAGAGAGAAAA 477
Query 551 TTATGCTGAAAGTTAATGCAGACAAGCTGGAGAGAAAACGGAGGCTCGGATTACCAACCG 610
|||||||||||||||||||||||||| |||||||||| ||||||| ||| || |||||||
Sbjct 478 TTATGCTGAAAGTTAATGCAGACAAGTTGGAGAGAAAGCGGAGGCGCGGTTTGCCAACCG 537
Query 611 AAACAGAATCCGCTTCGACATCAAATCCAGTTTCGCCACTTGACCCTAAGAG-AATAGTG 669
|| ||||| ||||||||||||| || |||||| ||||||| ||||||| || |||
Sbjct 538 AA---GAATCTGCTTCGACATCAATTCAAGTTTCTTTACTTGACTCTAAGAGGAA-AGTA 593
Query 670 ATGTCGTCGCCAAGCG-TAGTCTCGAAAGCAGAGGAGATGAGAGAATGTTTAAGGTCATT 728
||||||||| || || | | ||||||||||||||||||||||||||| |||||||||||
Sbjct 594 ATGTCGTCGTCACGCCCT-GCCTCGAAAGCAGAGGAGATGAGAGAATGCTTAAGGTCATT 652
Query 729 AAGACGAAACCACAAAGATGAAGATCCAAGAATCACGAGGAGGGTATTTGAAACGCTTCT 788
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 653 GAGACGAAACCACAAAGATGAAGATCCAAGAATCACGAGGACGGCATTTGAAACGCTTCT 712
Query 789 GACAATTGTGAGGAACGTAGCGAAGAAGCCAGACGAAGAAAGATACAGGAGAATCCGTCT 848
|||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 713 GACAATTGTGAGGAACGTTGCAAAGAAGCCAGACGAAGAAAGATACAGAAGAATCCGTCT 772
Query 849 CAAGAACCGCTTGTTCCATGAGAGAGTTGGAAGATATAAAGAAGGTATTGAGTTCATGGA 908
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 773 CAAGAACCGCTTGTTCCATGAGAGAGTTGGAAGATACAAAGAAGGTATTGAGTTCATGGA 832
Query 909 GCTTTGTGGATTCAA-A-AGAGTTGAAGGATCTGAGTTCTTATCTCTATCGAAACGTGAC 966
|| ||||||||||| | |||| ||||||||||||||||| |||||||| | | ||
Sbjct 833 ACTCTGTGGATTCAAGACAGAG--GAAGGATCTGAGTTCTTGTCTCTATCTTATCACGA- 889
Query 967 T-CAGACATCAACCGGCTTCGAGACGCTGCGTTTCTGTTGAACTCTGCGAGTGCCAATCC 1025
| ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||||
Sbjct 890 TGCAGACATCAACCGGCTTCGAGACGCTGCGTTTCAGTTGAACTCTGCGATTACCAATCC 949
Query 1026 CTTCTTTGGTCTTCTATCCACGGAAGCTGAA-A-GACCGTGAACAACAAACTTTCGCTTC 1083
||||||||||||||| |||||| |||||||| | ||| ||||| || || ||||| |||
Sbjct 950 CTTCTTTGGTCTTCTTTCCACGAAAGCTGAAGAAGACTGTGAAAAATAATCTTTCTCTTT 1009
Query 1084 CTGA 1087
||||
Sbjct 1010 CTGA 1013
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48949825428
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5