BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48710.1
Length=345
Score E
Sequences producing significant alignments: (Bits) Value
Ahg331280 jgi|Araly1|331280|fgenesh1_pm.C_scaffold_8000623 270 4e-72
> Ahg331280 jgi|Araly1|331280|fgenesh1_pm.C_scaffold_8000623
Length=324
Score = 270 bits (146), Expect = 4e-72
Identities = 225/262 (86%), Gaps = 9/262 (3%)
Strand=Plus/Plus
Query 1 ATGTCAAC-AACGAGCAGAG--T-TGGAAGCAATGAAGTGAAGATGGAAGGGCAAAAGCG 56
||||| || || ||| |||| | ||||||||| || |||||||| |||||| |||||||
Sbjct 1 ATGTCGACGAA-GAGGAGAGCATATGGAAGCAACGATGTGAAGATAGAAGGGAAAAAGCG 59
Query 57 TAAAGTTGTGTCGGACCCAACTCATGTTACTCTGAAAGTTAAGGGTCAGGACGAAGAA-G 115
||| |||| |||||| |||||||||||||||||||||| ||||||||||| || ||| |
Sbjct 60 TAAGGTTGAGTCGGAATCAACTCATGTTACTCTGAAAGTGAAGGGTCAGGATGAGGAAGG 119
Query 116 ATTTTAGAGTGTTTTGGGTGAGAAGGAATGCTAAGCTGCTTAAAA-TGATGGAACTTTAC 174
| | | ||||||| ||| ||||||| || |||||||| |||| |||||||| |||||
Sbjct 120 A-GTAAAAGTGTTTAAGGTAAGAAGGACTGTTAAGCTGC-AAAAATTGATGGAATTTTAC 177
Query 175 ACCAAGATGAGAGGCATCGAGTGGAACACATTTCGCTTTCTATTTGATGGCTCGAGGATT 234
||||| ||||||||| |||||||| |||||||||||||||||||||| ||||||||||||
Sbjct 178 ACCAAAATGAGAGGCGTCGAGTGGGACACATTTCGCTTTCTATTTGAGGGCTCGAGGATT 237
Query 235 CGAGAGTATCATACACCTGATG 256
|||||||||||||||| |||||
Sbjct 238 CGAGAGTATCATACACTTGATG 259
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12247944069
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5