BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48720.2
Length=1229
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494937 jgi|Araly1|494937|fgenesh2_kg.8__753__AT5G48720.1 1371 0.0
> Ahg494937 jgi|Araly1|494937|fgenesh2_kg.8__753__AT5G48720.1
Length=924
Score = 1371 bits (742), Expect = 0.0
Identities = 870/929 (94%), Gaps = 20/929 (2%)
Strand=Plus/Plus
Query 309 CGGATGTGCCTGACTGCACGATGACTGAAGTCACAT-TGAACCAAGAAGATCACTCGTAC 367
||||||||||||| |||||||||||||||||||| | | |||||||||||||||||||||
Sbjct 1 CGGATGTGCCTGATTGCACGATGACTGAAGTCAC-TCTAAACCAAGAAGATCACTCGTAC 59
Query 368 ATGTTTGATGATGAAAATACTCCTGTGAAGGCATGTAGCGAGTTGGGTTACCATGTCACA 427
|||||||||||||||| ||| |||||||| |||||||||||||||||||| |||||||||
Sbjct 60 ATGTTTGATGATGAAACTACCCCTGTGAAAGCATGTAGCGAGTTGGGTTATCATGTCACA 119
Query 428 ACAGAGGACACGAACAGGAAAATGGAAGTGCACAGTGAGACACGCTCTGCTTTAAAAAGG 487
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 120 ACAGAGGACACGAACAGGAAAATGGAAGTGCATAGTGAGACACGCTCTGCTTTAAAGAGG 179
Query 488 CGTCGGATGTTGCAGTTTGAAGACCAACCTGAAACATCCCTTTTCAGCAGTGAGAGTTTC 547
||||||||||||||||| |||||||||||||||||||| ||||||||| |||||||||||
Sbjct 180 CGTCGGATGTTGCAGTTCGAAGACCAACCTGAAACATCGCTTTTCAGCTGTGAGAGTTTC 239
Query 548 TCTGCAATCTTAAAATCAAGTGCTAGAGATGACACATTTGATGAGCTTTTACCCGAAGGG 607
||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||||
Sbjct 240 TCTGCAATCTTAAAATCTAGCGCTAGAGATGAGACATTTGATGAGCTTTTACCCGAAGGG 299
Query 608 TCTCAGCTTATAGAAGGGTTTTCAGAAGACGCTTCTGCCTCTAGCTTCGAGGGCCTTGAT 667
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 300 TCTCAGCTTATAGAAGGGTTTTCAGAAGACGCTTCTGCCTCTAGCTTTGAGGGCCTTGAT 359
Query 668 CTGTACGCTGAAGAGTGGTATGCTGATTGCTTAAATGATGCTGAGACTCCAATGCTACCT 727
||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 360 CTGTATGCTGAAGAGTGGTACGCTGAATGCTTAAATGATGCTGAGACTCCAATGCTACCT 419
Query 728 GATGACTTAAACTTTGGTTCACCTGATGTTCAAGTAGATATTTCAGAGTATTTGAATGTG 787
|||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 420 GATGACTTAAGCTTTGGTTCCCCTGATGTCCAAGTAGATATTTCAGAGTATTTGAATGTG 479
Query 788 CCACCAGAAACAGAGACTAGGGAAGTTCAGCGGCCTGTGACTCGATCTTCTCCAAATGTT 847
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 480 CCACCAGAAACAGAGACCAGGGAAGCTCAGCGGCCTGTGACTCGATCTTCTCCAAATGTT 539
Query 848 ATCTTTAAAGGTAGGAAATCGTTTTCAAGGCCAGTTTCAAAGCTACCATCTTCAATCATC 907
|||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| ||||||
Sbjct 540 ATCTTTAAAGGTCGGAAATCTTTTTCAAGACCAGTGTCAAAGCTACCATCTTCTATCATC 599
Query 908 TATCCATTTGCATTCATCAAACCATGTGGGGTTCACGGTGGAATGACTCTCAAGGACATA 967
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 600 TATCCATTTGCATTCATCAAACCATGTGGTGTTCACGGTGGTATGACTCTCAAGGACATA 659
Query 968 AACCAGAAAATCCGAAATCCACCAGCAAAACC-AAAGGCA-CACATAGAAGAGCCTGCAG 1025
|||||||||||||||||||||||||||||||| ||| || |||||||||||||||||||
Sbjct 660 AACCAGAAAATCCGAAATCCACCAGCAAAACCCAAA--CAACACATAGAAGAGCCTGCAG 717
Query 1026 TGATCCAAACTTCAGCATTCTCAGGGAAACCCGTTGTTGGAAAGACTAAAATCCGCACCG 1085
|||||||||||||||||||||| ||||| |||||||| || |||||||||||||||||||
Sbjct 718 TGATCCAAACTTCAGCATTCTCTGGGAAGCCCGTTGTAGGGAAGACTAAAATCCGCACCG 777
Query 1086 AAGGAGGAAAAGGAAGCATCACGATAATGAGGACTAGAGGCTAAAGCTAAGTTAAGT-AA 1144
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| ||
Sbjct 778 AAGGAGGAAAAGGAAGCATCACGATAATGAGGACGAGAGGCTAAAGCTAAGCTAAGTTAA 837
Query 1145 ---GTAGTAATAAGCTGATAGAAG-------G-TTTTAAAAATTCACTGCAGAAAACTTT 1193
||||||||||||||||||||| | |||||||| |||||||| |||||||||
Sbjct 838 TAAGTAGTAATAAGCTGATAGAAGTATTTAAGGTTTTAAAA-TTCACTGCTGAAAACTTT 896
Query 1194 TAAACTTTTTGCCTTATTCTCAGAGGCCC 1222
||| |||| |||||||||||||||||||
Sbjct 897 AAAA-TTTTCGCCTTATTCTCAGAGGCCC 924
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45899992068
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5