BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48730.1
Length=1663
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494938 jgi|Araly1|494938|fgenesh2_kg.8__754__AT5G48730.1 1317 0.0
> Ahg494938 jgi|Araly1|494938|fgenesh2_kg.8__754__AT5G48730.1
Length=1615
Score = 1317 bits (713), Expect = 0.0
Identities = 794/833 (95%), Gaps = 5/833 (1%)
Strand=Plus/Plus
Query 813 GTTCGTGGAGATGGAATCAACACTTATCCAAATGCTTGGAGAGGATGATTGCAAGCCTGA 872
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 783 GTTTGTGGAGATGGAATCAACACTTATCCAAATGCTTGGAGAGGATGATTGCAAGCCTGA 842
Query 873 TTCGTGGACCATGAACTCAACTCTTAGAGCCTTTGGGGGAAATGGACAAATAGAAATGAT 932
||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 843 TTCTTGGACCATGAACTCAACCCTTAGAGCCTTCGGGGGAAATGGACAAATAGAAATGAT 902
Query 933 GGAGAATTGTTATGAGAAGTTTCAGAGCTCTGGGATTGAACCCAACATCAGAACCTTCAA 992
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 903 GGAGAATTGTTATGAGAAGTTTCAGAGCTCTGGGATTGAACCCAACATCAGAACCTTCAA 962
Query 993 TATCCTCCTTGATTCCTATGGGAAATCAGGAAACTACAAGAAGATGAGTGCTGTGATGGA 1052
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 963 TATCCTCCTTGATTCATATGGGAAATCAGGGAACTACAAGAAGATGAGTGCTGTGATGGA 1022
Query 1053 ATACATGCAGAAGTATCATTATTCATGGACCATAGTCACCTATAATGTGGTCATTGACGC 1112
|||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1023 ATACATGCAGAAGTATCACTATTCATGGACCATAGTCACCTACAATGTGGTTATTGACGC 1082
Query 1113 GTTTGGGAGGGCAGGAGACTTAAAACAAATGGAATACTTATTTAGACTGATGCAATCAGA 1172
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 1083 GTTTGGGAGGGCAGGAGACTTGAAACAAATGGAATACTTATTTAGACTAATGCAATCAGA 1142
Query 1173 GAGAATTTTCCCGAGTTGTGTTACACTATGTTCTCTTGTTCGTGCTTATGGAAGAGCTAG 1232
||||||| | || || ||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 1143 GAGAATTATACCAAGCTGTGTTACACTATGTTCTCTTGTTCGTGCCTATGGAAGAGCTGG 1202
Query 1233 TAAAGCTGATAAAATTGGAGGAGTATTGCGTTTCATCGAGAACTCAGACATAAGGTTAGA 1292
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 1203 TAAAGCTGATAAAATTGGAGGAGTCTTGCGTTTCATCGAGAATTCAGACATAAGGTTAGA 1262
Query 1293 CCTCGTGTTCTTTAACTGTCTGGTAGATGCGTACGGGAGGATGGAAAAGTTTGCAGAGAT 1352
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1263 CCTCGTGTTTTTTAACTGTCTGGTAGATGCGTACGGGAGGATGGAAAAGTTTGCAGAGAT 1322
Query 1353 GAAAGGTGTTCTTGAACTAATGGAAAAGAAGGGATTCAAACCTGATAAGATTACATACAG 1412
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1323 GAAAGGTGTTCTCGAACTAATGGAAAAGAAGGGATTCAAACCTGATAAGATTACATACAG 1382
Query 1413 GACAATGGTTAAGGCTTATAGAATTAGTGGCATGACTACCCATGTAAAGGAACTTCATGG 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1383 GACAATGGTTAAGGCTTATAGAATTAGTGGCATGACTACCCATGTAAAGGAACTTCATGG 1442
Query 1473 TGTGGTTGAGTCTGTTGGTGAAGCCCAAGTTGTGGTGAAGAAGCCAGATTTTTAGTGGAG 1532
||| |||||||| ||||||||| ||||||||||| |||||||||| ||||||||| ||||
Sbjct 1443 TGTTGTTGAGTCCGTTGGTGAAACCCAAGTTGTGTTGAAGAAGCCGGATTTTTAGCGGAG 1502
Query 1533 GAATAGAGCTCAATTTTGCTAGTATATATCTTTCTAGTATCCATCTCCTTGTTCTAATGA 1592
|||||||||||||||||||| |||||||| ||||||||||| ||| ||||||||||||||
Sbjct 1503 GAATAGAGCTCAATTTTGCTGGTATATATTTTTCTAGTATCAATCACCTTGTTCTAATGA 1562
Query 1593 TAAAATGTAGTTAGTAT-A-AG-A--GTAAATACATTTTCAGTTGGATTACAA 1640
||||| ||||||||||| | || | ||||||||||||||| |||| ||||||
Sbjct 1563 TAAAAGGTAGTTAGTATGAGAGTAAAGTAAATACATTTTCAATTGGCTTACAA 1615
Score = 1179 bits (638), Expect = 0.0
Identities = 738/785 (94%), Gaps = 11/785 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCACTCTCCACCTCCACTAGCCACGCGCCACCACTTCCGA---C---TAACCGC 54
|||||||| |||||||||||||| ||||||||||||||||| |||| | ||||||
Sbjct 1 ATGGTTTCGCTCTCCACCTCCACAAGCCACGCGCCACCACTCCCGACGGCGTTTAACCGT 60
Query 55 CGGA-CGGCGGAGAGAACTTTTACCGTCCGCTGTATCTCCATCTCCCCACGCGAGCCTAA 113
| || |||||||||||||||| |||||||| |||||||||||||||||||||||||| ||
Sbjct 61 C-GACCGGCGGAGAGAACTTTCACCGTCCGATGTATCTCCATCTCCCCACGCGAGCCGAA 119
Query 114 TTACGCAATTACTTCCGATAAAAGCAACAATA---CCTCCTTGTCGCTTAGAGAGACGAG 170
|| ||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 120 ACACACAATTACTTCCGATAAAAGCACCAGTACGTCCTCCTTGTCGCTTAGAGAGACGAG 179
Query 171 ACAAAGCAAATGGCTAATCAATGCAGAGGACGTGAATGAAAGAGATTCGAAGGAGATTAA 230
||||||||||||||||| ||| | |||||||||| ||| |||||||||||||||| |||
Sbjct 180 GCAAAGCAAATGGCTAATGAATTCGGAGGACGTGATTGAGAGAGATTCGAAGGAGAGTAA 239
Query 231 AGAGGATAAGAACACGAAGATCGCTTCGAGGAAGGCGATATCGATAATACTCCGAAGAGA 290
|||| ||| |||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 240 AGAGAATACGAACACAAAGATCGCTTCGAGGAAGGCAATATCGATAATACTCCGAAGAGA 299
Query 291 AGCTACAAAATCGATCATTGAGAAGAAGAAAGGCTCGAAGAAGCTTCTTCCAAGGACTGT 350
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 AGCTACAAAAGAGATAATTGAGAAGAAGAAAGGCTCGAAGAAGCTTCTTCCAAGGACTGT 359
Query 351 GCTTGAGTCTCTTCACGAAAGAATCACTGCTCTCCGATGGGAATCTGCTATTCAGGTGTT 410
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 360 GCTTGAGTCTCTTCACGAAAGAATCACTGCTCTCCGATGGGAATCTGCTCTTCAGGTGTT 419
Query 411 TGAACTATTGCGCGAACAGCTATGGTACAAACCAAACGTTGGCATCTATGTGAAGCTGAT 470
||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 420 TGAGCTATTGCGCGAACAGCTATGGTACAAACCAAACGTTGGTATCTATGTGAAGCTGAT 479
Query 471 TGTGATGCTTGGAAAATGCAAACAGCCGGAAAAGGCTCATGAACTCTTTCAGGAAATGAT 530
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 480 TGTGATGCTTGGAAAATGCAAACAACCGGAAAAGGCTCATGAACTCTTTCAGGAAATGAT 539
Query 531 TAATGAAGGTTGTGTGGTGAATCATGAAGTGTATACTGCACTTGTATCTGCTTATAGTAG 590
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 540 TAATGAAGGCTGTGTGGTGAATCATGAAGTGTATACTGCACTTTTATCTGCTTATAGTAG 599
Query 591 GAGTGGACGCTTTGATGCTGCGTTTACTCTTCTGGAACGTATGAAAAGTAGTCATAACTG 650
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 GAGCGGACGCTTTGATGCTGCGTTTACTCTTCTGGAACGTATGAAAAGTAGTCATAACTG 659
Query 651 TCAGCCGGATGTGCACACTTATTCCATCCTTATTAAGTCGTTTCTTCAGGTTTTTGCGTT 710
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 660 TCAGCCGGATGTGCACACGTATTCCATCCTCATTAAGTCGTTTCTTCAGGTTTTTGCGTT 719
Query 711 TGATAAAGTTCAGGATCTGCTTTCTGATATGAGAAGACAGGGTATTAGGCCTAATACAAT 770
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TGATAAGGTTCAGGATCTGCTTTCTGATATGAGAAGACAGGGTATTAGGCCTAATACAAT 779
Query 771 CACGT 775
|||||
Sbjct 780 CACGT 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62353731065
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5