BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48750.1
Length=768
Score E
Sequences producing significant alignments: (Bits) Value
Ahg357124 jgi|Araly1|357124|fgenesh1_pg.C_scaffold_8000911 909 0.0
Ahg949355 jgi|Araly1|949355|scaffold_801242.1 854 0.0
Ahg952060 jgi|Araly1|952060|scaffold_3400004.1 848 0.0
Ahg916395 jgi|Araly1|916395|Al_scaffold_0008_1146 835 0.0
Ahg486373 jgi|Araly1|486373|fgenesh2_kg.5__2365__AT3G59070.1 521 2e-147
Ahg952059 jgi|Araly1|952059|scaffold_3400003.1 518 3e-146
> Ahg357124 jgi|Araly1|357124|fgenesh1_pg.C_scaffold_8000911
Length=2640
Score = 909 bits (492), Expect = 0.0
Identities = 658/739 (89%), Gaps = 8/739 (1%)
Strand=Plus/Plus
Query 23 TTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCCATGCTTTACTAGAGCAACAACCA 82
||||||||| ||||||||||||||||| | ||||||| ||| |||||||||||||||
Sbjct 26 TTTTTGTGGTTTTGTGTTTTCTGTTCGGGCTCGCTCCATACTTCACTAGAGCAACAACCG 85
Query 83 ATGAAGTTCAAGTTAGCTGCGACTCTCACAACTTCAACAATGGCAAACACTTCCGTTCAT 142
||||| |||||| ||| |||||||| |||| ||| ||||| |||||||||||||||||||
Sbjct 86 ATGAACTTCAAGCTAGATGCGACTCACACAGCTTTAACAACGGCAAACACTTCCGTTCAT 145
Query 143 GTGTTGACCTTCCTGTGTTAGATTCGTTTCTACACTACAGTTACGTTCGAGAAACCGGAG 202
| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||||||||
Sbjct 146 GCGTTGACCTTCCCGTGTTAGATTCTTTTCTACACTTCAGTTACGTTCGAGAAACCGGAG 205
Query 203 TGCTTGAAGTTGCATATCGTCATACCAACATCGAGTCTTCTAGTTGGATTGCTTGGGGCA 262
||||||||||||| |||||||| | |||| | || |||||||| ||||| |||||||| |
Sbjct 206 TGCTTGAAGTTGCGTATCGTCACATCAACGTTGAATCTTCTAGGTGGATCGCTTGGGGGA 265
Query 263 TAAACCCGACGAGCAAAGGCATGAT-AGGTGCTCAAACACTTTTGGCTTACCGTAACTCC 321
|||||||||| |||||||||||| | |||| ||||||| || |||||||||||||| |||
Sbjct 266 TAAACCCGACAAGCAAAGGCATG-TCAGGTTCTCAAACTCTCTTGGCTTACCGTAATTCC 324
Query 322 ACGTCCGGTTTTATGCGTG-CATATACTTCCTCAAT-AAATGGCTACACACCTATGCTTC 379
||||| ||| ||||||||| | |||||||||||||| ||| |||||| |||||| ||||
Sbjct 325 ACGTCTGGTATTATGCGTGTC-TATACTTCCTCAATCAAA-GGCTACTCACCTACACTTC 382
Query 380 AAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCTGAATATCTCAATAGAGAGA 439
||||||| ||||| ||||| |||||| ||||||||||| ||||||||||||| ||||||
Sbjct 383 AAGAAGGTCCTCTCAGCTTCCGTGTATTGCAACTATCCGGTGAATATCTCAATGGAGAGA 442
Query 440 TGACTATATTTGCCACTATGGTGTGGCCGTCTAACACAACCGTTGTCAATCATTTATGGC 499
||||||||||||| ||||| |||| ||| ||||||| |||||| || |||||||||||||
Sbjct 443 TGACTATATTTGCTACTATAGTGTTGCCTTCTAACATAACCGTCGTGAATCATTTATGGC 502
Query 500 AAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCACGCCATGAGTGGAAATCATC 559
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||
Sbjct 503 AAGACGGTCCCTTGAAGGAAGGTGATAGACTTGGGATGCACGCCATGAGTGGAGATCATC 562
Query 560 TCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTCATGACCACTAAAGCAGCTA 619
| ||||||| ||||| |||||||||| ||||||||||||||| |||| | ||||||||||
Sbjct 563 TTAAATCCACGGCTACTTTGGATTTGCTGTCCGGACAAGTCACGACCTCAAAAGCAGCTA 622
Query 620 ATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTGAATGCAGTGTGTTGGGGGA 679
| |||||||||||||||||||||| || |||||||||||||| || ||||||||||| |
Sbjct 623 ACGATAACATGTTACTAGTCAAAAATATCCATGGACTAGTGAACGCGGTGTGTTGGGGTA 682
Query 680 TTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGGACCTACAAAGGACTGGACC 739
||||||| || ||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 683 TTTTCATGCCTATTGGTGTCATAGCTGCAAGGTACATGAGGACCTACAAAGGACTGGATC 742
Query 740 CCACT-TGGTTCTACATAC 757
||| | |||||||||||||
Sbjct 743 CCA-TGTGGTTCTACATAC 760
> Ahg949355 jgi|Araly1|949355|scaffold_801242.1
Length=1241
Score = 854 bits (462), Expect = 0.0
Identities = 648/739 (88%), Gaps = 8/739 (1%)
Strand=Plus/Plus
Query 23 TTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCCATGCTTTACTAGAGCAACAACCA 82
||||||||| |||||||||||| ||||| | ||||||| ||| |||| |||||||||
Sbjct 47 TTTTTGTGGTTTTGTGTTTTCTTTTCGTGCTCGCTCCATACTTCGCTAGGGCAACAACCG 106
Query 83 ATGAAGTTCAAGTTAGCTGCGACTCTCACAACTTCAACAATGGCAAACACTTCCGTTCAT 142
||||| |||||| ||| |||||||| |||| ||| ||||| |||||||||||||||||||
Sbjct 107 ATGAACTTCAAGCTAGATGCGACTCACACAGCTTTAACAACGGCAAACACTTCCGTTCAT 166
Query 143 GTGTTGACCTTCCTGTGTTAGATTCGTTTCTACACTACAGTTACGTTCGAGAAACCGGAG 202
| ||||||||||| ||||||||||| |||||||||| |||||||||||||||||| ||||
Sbjct 167 GCGTTGACCTTCCCGTGTTAGATTCTTTTCTACACTTCAGTTACGTTCGAGAAACAGGAG 226
Query 203 TGCTTGAAGTTGCATATCGTCATACCAACATCGAGTCTTCTAGTTGGATTGCTTGGGGCA 262
||||||||||||| |||||||| | |||| | || |||||||||||||| |||||||| |
Sbjct 227 TGCTTGAAGTTGCGTATCGTCACATCAACGTAGACTCTTCTAGTTGGATCGCTTGGGGGA 286
Query 263 TAAACCCGACGAGCAAAGGCATGAT-AGGTGCTCAAACACTTTTGGCTTACCGTAACTCC 321
|||||||||| |||||||||||| | |||| ||||||| || || ||||| ||||| |||
Sbjct 287 TAAACCCGACAAGCAAAGGCATG-TCAGGTTCTCAAACTCTCTTAGCTTATCGTAATTCC 345
Query 322 ACGTCCGGTTTTATGCGTG-CATATACTTCCTCAAT-AAATGGCTACACACCTATGCTTC 379
||||| ||| ||||||| | | |||||||||||||| ||| |||||| |||||| |||||
Sbjct 346 ACGTCTGGTGTTATGCGAGTC-TATACTTCCTCAATCAAA-GGCTACTCACCTACGCTTC 403
Query 380 AAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCTGAATATCTCAATAGAGAGA 439
||||| | ||||| ||||| |||||| ||||||||||| ||||||||||||| ||||||
Sbjct 404 AAGAAAGTCCTCTCAGCTTCCGTGTATTGCAACTATCCGGTGAATATCTCAATGGAGAGA 463
Query 440 TGACTATATTTGCCACTATGGTGTGGCCGTCTAACACAACCGTTGTCAATCATTTATGGC 499
||||||||||||| ||||| |||| ||| ||||||| |||||| || |||||||||||||
Sbjct 464 TGACTATATTTGCTACTATAGTGTTGCCTTCTAACATAACCGTCGTGAATCATTTATGGC 523
Query 500 AAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCACGCCATGAGTGGAAATCATC 559
|||||||||| |||||||||| |||||| |||||||||||||| ||||||||| ||||||
Sbjct 524 AAGACGGTCCCTTGAAGGAAGATGATAGACTTGGGATGCACGCTATGAGTGGAGATCATC 583
Query 560 TCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTCATGACCACTAAAGCAGCTA 619
| ||||| ||||||| |||||||||| |||| || ||||||| |||||| ||||||||||
Sbjct 584 TTAAATCTATGGCTACTTTGGATTTGCTGTCGGGGCAAGTCACGACCACAAAAGCAGCTA 643
Query 620 ATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTGAATGCAGTGTGTTGGGGGA 679
| ||||||||||||||||| |||| ||||||||||||||||| || ||||||||||| |
Sbjct 644 ACGATAACATGTTACTAGTTAAAAAAATTCATGGACTAGTGAACGCGGTGTGTTGGGGTA 703
Query 680 TTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGGACCTACAAAGGACTGGACC 739
||||||| || ||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 704 TTTTCATGCCTATTGGTGTCTTGGCTGCAAGGTACATGAGGACCTACAAAGGACTAGATC 763
Query 740 CCACT-TGGTTCTACATAC 757
||| | ||| |||||||||
Sbjct 764 CCA-TGTGGCTCTACATAC 781
> Ahg952060 jgi|Araly1|952060|scaffold_3400004.1
Length=1241
Score = 848 bits (459), Expect = 0.0
Identities = 647/739 (88%), Gaps = 8/739 (1%)
Strand=Plus/Plus
Query 23 TTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCCATGCTTTACTAGAGCAACAACCA 82
||||||||| |||||||||||| ||||| | ||||||| ||| |||| |||||||||
Sbjct 47 TTTTTGTGGTTTTGTGTTTTCTTTTCGTGCTCGCTCCATACTTCGCTAGGGCAACAACCG 106
Query 83 ATGAAGTTCAAGTTAGCTGCGACTCTCACAACTTCAACAATGGCAAACACTTCCGTTCAT 142
||||| |||||| ||| |||||||| |||| ||| ||||| |||||||||||||||||||
Sbjct 107 ATGAACTTCAAGCTAGATGCGACTCACACAGCTTTAACAACGGCAAACACTTCCGTTCAT 166
Query 143 GTGTTGACCTTCCTGTGTTAGATTCGTTTCTACACTACAGTTACGTTCGAGAAACCGGAG 202
| ||||||||||| ||||||||||| |||||||||| ||||||||||||||| || ||||
Sbjct 167 GCGTTGACCTTCCCGTGTTAGATTCTTTTCTACACTTCAGTTACGTTCGAGATACAGGAG 226
Query 203 TGCTTGAAGTTGCATATCGTCATACCAACATCGAGTCTTCTAGTTGGATTGCTTGGGGCA 262
||||||||||||| |||||||| | |||| | || |||||||||||||| |||||||| |
Sbjct 227 TGCTTGAAGTTGCGTATCGTCACATCAACGTAGACTCTTCTAGTTGGATCGCTTGGGGGA 286
Query 263 TAAACCCGACGAGCAAAGGCATGAT-AGGTGCTCAAACACTTTTGGCTTACCGTAACTCC 321
|||||||||| ||| |||||||| | |||| ||||||| || || ||||| ||||| |||
Sbjct 287 TAAACCCGACAAGCGAAGGCATG-TCAGGTTCTCAAACTCTCTTAGCTTATCGTAATTCC 345
Query 322 ACGTCCGGTTTTATGCGTG-CATATACTTCCTCAAT-AAATGGCTACACACCTATGCTTC 379
||||| ||| ||||||| | | |||||||||||||| ||| |||||| |||||| |||||
Sbjct 346 ACGTCTGGTGTTATGCGAGTC-TATACTTCCTCAATCAAA-GGCTACTCACCTACGCTTC 403
Query 380 AAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCTGAATATCTCAATAGAGAGA 439
||||| | ||||| ||||| |||||| ||||||||||| ||||||||||||| ||||||
Sbjct 404 AAGAAAGTCCTCTCAGCTTCCGTGTATTGCAACTATCCGGTGAATATCTCAATGGAGAGA 463
Query 440 TGACTATATTTGCCACTATGGTGTGGCCGTCTAACACAACCGTTGTCAATCATTTATGGC 499
||||||||||||| ||||| |||| ||| ||||||| |||||| || |||||||||||||
Sbjct 464 TGACTATATTTGCTACTATAGTGTTGCCTTCTAACATAACCGTCGTGAATCATTTATGGC 523
Query 500 AAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCACGCCATGAGTGGAAATCATC 559
|||||||||| |||||||||| |||||| |||||||||||||| ||||||||| ||||||
Sbjct 524 AAGACGGTCCCTTGAAGGAAGATGATAGACTTGGGATGCACGCTATGAGTGGAGATCATC 583
Query 560 TCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTCATGACCACTAAAGCAGCTA 619
| ||||| ||||||| |||||||||| |||| || ||||||| |||||| ||||||||||
Sbjct 584 TTAAATCTATGGCTACTTTGGATTTGCTGTCGGGGCAAGTCACGACCACAAAAGCAGCTA 643
Query 620 ATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTGAATGCAGTGTGTTGGGGGA 679
| ||||||||||||||||| |||| ||||||||||||||||| || ||||||||||| |
Sbjct 644 ACGATAACATGTTACTAGTTAAAAAAATTCATGGACTAGTGAACGCGGTGTGTTGGGGTA 703
Query 680 TTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGGACCTACAAAGGACTGGACC 739
||||||| || ||||||||| |||||||||||||||||||||||||||||||||| || |
Sbjct 704 TTTTCATGCCTATTGGTGTCTTGGCTGCAAGGTACATGAGGACCTACAAAGGACTAGATC 763
Query 740 CCACT-TGGTTCTACATAC 757
||| | |||||||||||||
Sbjct 764 CCA-TGTGGTTCTACATAC 781
> Ahg916395 jgi|Araly1|916395|Al_scaffold_0008_1146
Length=1194
Score = 835 bits (452), Expect = 0.0
Identities = 655/754 (87%), Gaps = 10/754 (1%)
Strand=Plus/Plus
Query 9 GTCTTCGA-GAA-CTATTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCCATGCTTT 66
|||||| | ||| || || | |||| |||||||||||||||||| | ||||||| |||
Sbjct 6 GTCTTC-ACGAACCT-TTGTAGTGGTTTTGTGTTTTCTGTTCGTAATCGCTCCATACTTC 63
Query 67 ACTAGAGCAACAACCAATGAAGTTCAAGTTAGCTGCGACTCT-CACAACTTCAACAATGG 125
||||||||||||||| ||| ||||| | ||| || |||||| |||| || | || ||
Sbjct 64 ACTAGAGCAACAACCGATGGAGTTCGTGCTAGATGTGACTCTAAACAA-TTTAGGAACGG 122
Query 126 CAAACACTTCCGTTCATGTGTTGACCTTCCTGTGTTAGATTCGTTTCTACACTACAGTTA 185
|||||||||||| || || |||||||||| |||||||| || | |||||||| ||||||
Sbjct 123 CAAACACTTCCGATCTTGCATTGACCTTCCGGTGTTAGACTCCTATCTACACTTCAGTTA 182
Query 186 CGTTCGAGAAACCGGAGTGCTTGAAGTTGCATATCGTCATACCAACATCGAGTCTTCTAG 245
|||||||||| |||||| ||||| ||||| |||||||| |||||| ||||| ||||||
Sbjct 183 TGTTCGAGAAAGCGGAGTACTTGATGTTGCGTATCGTCACACCAACGTCGAGAGTTCTAG 242
Query 246 TTGGATTGCTTGGGGCATAAACCCGACGAGCAAAGGCATGATAGGTGCTCAAACACTTTT 305
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| || ||
Sbjct 243 TTGGATTGCTTGGGGCATAAACCCGACGAGTAAAGGCATGTTAGGTGCTCAAACTCTCTT 302
Query 306 GGCTTACCGTAACTCCACGTCCGGTTTTATGCGTGCATATACTTCCTCAATAAATGG-CT 364
||||||||||||||| |||| |||||||||||||| |||||||||||||| || || ||
Sbjct 303 GGCTTACCGTAACTCTTCGTCTGGTTTTATGCGTGCCTATACTTCCTCAATTAA-GGACT 361
Query 365 ACACACCTATGCTTCAAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCTGAAT 424
| || ||| |||||||||||| ||||| ||||||| |||| ||||| ||||||||||
Sbjct 362 ATTCAACTACGCTTCAAGAAGGACCTCTCAGCTTTCACGTAAAACAACTTTCCGCTGAAT 421
Query 425 ATCTCAATAGAGAGATGACTATATTTGCCACTATGGTGTGGCCGT-CTAACACAACCGTT 483
||||||| |||||||||||||||| |||||||| || | ||| | |||||||||| ||
Sbjct 422 TTCTCAATGGAGAGATGACTATATTCGCCACTATAGTCTTGCC-TACTAACACAACAGTC 480
Query 484 GTCAATCATTTATGGCAAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCACGCC 543
|| |||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||
Sbjct 481 GTAAATCATTTATGGCAAGACGGTCCGCTGAAAGAAGGTGATAGACTTGGGATGCATGCT 540
Query 544 ATGAGTGGAAATCATCTCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTCATG 603
|||| | || ||||||||||||||||||||| |||||| ||||||||||||||| ||| |
Sbjct 541 ATGAATAGAGATCATCTCAAATCCATGGCTACTTTGGACTTGTTGTCCGGACAATTCACG 600
Query 604 ACCACTAAAGCAGCTAATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTGAAT 663
|||| |||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 601 ACCATTAAAGCAGCTAACGATAACATGTTACTAGTCAAAAACATTCATGGACTAGTGAAC 660
Query 664 GCAGTGTGTTGGGGGATTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGGACC 723
|| |||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 661 GCGGTGTGTTGGGGGATTTTCATGCCCATCGGTGTTATGGCTGCAAGGTACATGAGGACC 720
Query 724 TACAAAGGACTGGACCCCACTTGGTTCTACATAC 757
|||||||||||||| ||||||||||| |||||||
Sbjct 721 TACAAAGGACTGGATCCCACTTGGTTTTACATAC 754
> Ahg486373 jgi|Araly1|486373|fgenesh2_kg.5__2365__AT3G59070.1
Length=1440
Score = 521 bits (282), Expect = 2e-147
Identities = 614/771 (80%), Gaps = 35/771 (5%)
Strand=Plus/Plus
Query 1 ATGT-TTCTGTCTTCGAGAACTATTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGCTCC 59
|||| || ||||||||||| | | || || | |||||||| ||||||||| ||| |||
Sbjct 1 ATGTCTT-TGTCTTCGAGAGCCACGTTAGTCGTTTTGTGTTGTCTGTTCGTGTTGATTCC 59
Query 60 ATGC-TTTACTAGAGCAACAACCA-ATGAA-G--TTCAAGTTAGCTGCGACTCTCACAAC 114
|| | ||||| | |||||||| || | || | |||| | ||| || || ||| ||| |
Sbjct 60 AT-CTTTTACGACAGCAACAA-CAGAACAAGGACTTCATGCTAGATGTGAATCTTACAGC 117
Query 115 TTCAACAATGGCAAACA-CTTCCGTTCATGTGTTGACCTTCCTGTGTTAGATTCGTT-TC 172
|||||||| || ||| | ||| || || || || ||||| ||| || | || || ||
Sbjct 118 TTCAACAACGG-AAAAAGCTTTCGCTCGTGCACGGATCTTCCGGTGCTAAACTC-TTATC 175
Query 173 TACACTACAGTTACGTTCGAGAAACCGGAGTGCTTGAAGTTGCATATCGTCA-TACCAA- 230
|||||| | ||| | || |||||||||||| |||||| |||| || ||||| | ||||
Sbjct 176 TACACTTTAATTATGCTCAAGAAACCGGAGTTCTTGAAATTGCCTACCGTCACT-CCAAT 234
Query 231 CATCGAGTCTTCTAGTTGGATTGCTTGGGGC-ATAAACCCGACGAGCAAAGGCATGATAG 289
| | ||||||||||||||||| || | |||| |||||||||||||| ||||||||| | |
Sbjct 235 C-TTGAGTCTTCTAGTTGGATCGCGT-GGGCTATAAACCCGACGAGTAAAGGCATGTTGG 292
Query 290 GTGCTCAAACACTTTTGGCTTACCGTAACTCCACGTCCGGTTTTATGCGTGCATATACTT 349
| |||||| ||||| ||||||| || ||||| || || || |||||||||| |||||||
Sbjct 293 GAGCTCAAGCACTTGTGGCTTATCGAAACTCAACTTCTAGTGTTATGCGTGCTTATACTT 352
Query 350 CCTCAATAAATGGCTACACACCTATGCTTCAAGAAGGC-CCTCTGAGCTTTCGTGTAACG 408
|||| || ||| ||||| | ||||||||||||||| | ||||| ||||||||||||| |
Sbjct 353 CCTCCATTAATAGCTACTCTCCTATGCTTCAAGAA-TCTCCTCTTAGCTTTCGTGTAATG 411
Query 409 CAACTATCCGCTGAATATCTCAATAGAGAGATGACT-ATATTTGCCACTATGGTGTGGCC 467
||| ||||||| || ||| | ||| ||||||||| | |||||||| ||| | || | |||
Sbjct 412 CAAGTATCCGCCGAGTATTTTAATGGAGAGATGA-TGATATTTGCAACTTTAGTCTTGCC 470
Query 468 GT-CTAACACAACCGTTGTCAATCATTTATGGCAAGACGGTCCGTTGAAGGAAGGTGATA 526
| ||||||||||||| || ||||| ||||||||||||||||||||||||||||| | ||
Sbjct 471 -TCCTAACACAACCGTCGTTAATCACTTATGGCAAGACGGTCCGTTGAAGGAAGGAGGTA 529
Query 527 GGCTTGGGATGCACGCCATGAGTGGAAATCATCTCAAATCCATGGCTAATTTGGATTTG- 585
| ||||| |||||||| ||||||||| |||||||||||| ||||||| ||||||||||
Sbjct 530 GACTTGGAATGCACGCAATGAGTGGAGATCATCTCAAATTCATGGCTTCTTTGGATTTGC 589
Query 586 TTGTCCGGACAAGTCATGACCACTAAAGCAGCTAAT-GATAACATGTTACTAGTCAAAAG 644
|| ||||||||||||| ||||| ||| ||| ||| || |||||||| | || ||| |
Sbjct 590 TT-TCCGGACAAGTCACAACCACAAAATCAGTTAACAGA-AACATGTTGTTGGT-AAA-G 645
Query 645 C-ATTC-ATGGACTAGTGAATGCAGTGTGTTGGGGGATTTTCATACCCATTGGTGTCATG 702
| | || ||||| |||||||| |||| ||||||| |||||||| || ||||| || |||
Sbjct 646 CGAATCCATGGAATAGTGAATACAGTAAGTTGGGGAATTTTCATGCCTATTGGAGTTATG 705
Query 703 GCTGCAAGGTACATGAGGACCTACAAAGG-ACTGGACCCCACTTGGTTCTA 752
|||||||| || |||| | |||| | || | | |||||||| ||||||||
Sbjct 706 GCTGCAAGATATATGAAAAACTACGA-GGTATTAGACCCCACATGGTTCTA 755
> Ahg952059 jgi|Araly1|952059|scaffold_3400003.1
Length=1169
Score = 518 bits (280), Expect = 3e-146
Identities = 359/398 (90%), Gaps = 2/398 (1%)
Strand=Plus/Plus
Query 361 GGCTACACACCTATGCTTCAAGAAGGCCCTCTGAGCTTTCGTGTAACGCAACTATCCGCT 420
|||||| |||||| |||||||||||| ||||| ||||| |||||| ||||||||||| |
Sbjct 313 GGCTACTCACCTACGCTTCAAGAAGGTCCTCTCAGCTTCCGTGTATTGCAACTATCCGGT 372
Query 421 GAATATCTCAATAGAGAGATGACTATATTTGCCACTATGGTGTGGCCGTCTAACACAACC 480
|||||||||||| ||||||||||||||||||| ||||| |||| ||| ||||||| ||||
Sbjct 373 GAATATCTCAATGGAGAGATGACTATATTTGCTACTATAGTGTTGCCTTCTAACATAACC 432
Query 481 GTTGTCAATCATTTATGGCAAGACGGTCCGTTGAAGGAAGGTGATAGGCTTGGGATGCAC 540
|| || ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 433 GTCGTGAATCATTTATGGCAAGACGGTCCTTTGAAGGAAGGTGATAGACTTGGGATGCAC 492
Query 541 GCCATGAGTGGAAATCATCTCAAATCCATGGCTAATTTGGATTTGTTGTCCGGACAAGTC 600
|||||||||||| ||||||| ||||||| ||||| |||||||||| ||||||||||||||
Sbjct 493 GCCATGAGTGGAGATCATCTTAAATCCACGGCTACTTTGGATTTGCTGTCCGGACAAGTC 552
Query 601 ATGACCACTAAAGCAGCTAATGATAACATGTTACTAGTCAAAAGCATTCATGGACTAGTG 660
| |||| | ||||||||||| |||||||||||||||||||||| || ||||||||||||
Sbjct 553 ACGACCTCAAAAGCAGCTAACGATAACATGTTACTAGTCAAAAATATCCATGGACTAGTG 612
Query 661 AATGCAGTGTGTTGGGGGATTTTCATACCCATTGGTGTCATGGCTGCAAGGTACATGAGG 720
|| || ||||||||||| |||||||| || ||||||||||| ||||||||||||||||||
Sbjct 613 AACGCGGTGTGTTGGGGTATTTTCATGCCTATTGGTGTCATAGCTGCAAGGTACATGAGG 672
Query 721 ACCTACAAAGGACTGGACCCCACT-TGGTTCTACATAC 757
||||||||||||||||| |||| | |||||||||||||
Sbjct 673 ACCTACAAAGGACTGGATCCCA-TGTGGTTCTACATAC 709
Score = 335 bits (181), Expect = 3e-91
Identities = 254/289 (88%), Gaps = 5/289 (2%)
Strand=Plus/Plus
Query 1 ATGT-TTCTGTCTTCGAGAACTA---TTTTTGTGGGTTTGTGTTTTCTGTTCGTTTTGGC 56
|||| || ||||| ||||||| | ||||||||| |||||||||||||||||| | ||
Sbjct 22 ATGTCTT-TGTCTCCGAGAACAACCGTTTTTGTGGTTTTGTGTTTTCTGTTCGTGCTCGC 80
Query 57 TCCATGCTTTACTAGAGCAACAACCAATGAAGTTCAAGTTAGCTGCGACTCTCACAACTT 116
||||| ||| ||||||||||||||| ||||| |||||| ||| ||||| || |||| |||
Sbjct 81 TCCATACTTCACTAGAGCAACAACCGATGAACTTCAAGCTAGATGCGAGTCACACAGCTT 140
Query 117 CAACAATGGCAAACACTTCCGTTCATGTGTTGACCTTCCTGTGTTAGATTCGTTTCTACA 176
||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 141 TAACAACGGCAAACACTTCCGTTCATGCGTTGACCTTCCCGTGTTAGATTCTTTTCTACA 200
Query 177 CTACAGTTACGTTCGAGAAACCGGAGTGCTTGAAGTTGCATATCGTCATACCAACATCGA 236
|| |||||||||||||||||||||||||||||||||||| |||||||| | |||| | ||
Sbjct 201 CTTCAGTTACGTTCGAGAAACCGGAGTGCTTGAAGTTGCGTATCGTCACATCAACGTTGA 260
Query 237 GTCTTCTAGTTGGATTGCTTGGGGCATAAACCCGACGAGCAAAGGCATG 285
|||||||||||||| |||||||| ||||||||||| ||||||||||||
Sbjct 261 ATCTTCTAGTTGGATCGCTTGGGGGATAAACCCGACAAGCAAAGGCATG 309
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28325327331
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5