BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT5G48760.1
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
Ahg494941 jgi|Araly1|494941|fgenesh2_kg.8__757__AT5G48760.1 1013 0.0
Ahg478031 jgi|Araly1|478031|fgenesh2_kg.3__732__AT3G07110.2 680 0.0
Ahg930609 jgi|Araly1|930609|scaffold_303066.1 579 1e-164
> Ahg494941 jgi|Araly1|494941|fgenesh2_kg.8__757__AT5G48760.1
Length=728
Score = 1013 bits (548), Expect = 0.0
Identities = 602/629 (96%), Gaps = 0/629 (0%)
Strand=Plus/Plus
Query 32 CGAAAATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTCGACGCGCGCCACC 91
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 CGAAAATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTAGACGCGCGCCACC 60
Query 92 ACATGCTTGGCCGTCTTGCGTCGATCACCGCTAAAGAGCTTCTCAATGGCCAGAAAGTTG 151
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 61 ACATGCTTGGTCGTCTTGCGTCAATCACCGCTAAAGAGCTTCTCAATGGCCAGAAAGTTG 120
Query 152 TCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGCGGACTCGTTCGTCAGAAAATGAAGT 211
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 TCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGTGGACTCGTTCGTCAGAAAATGAAGT 180
Query 212 ACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTCC 271
||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 181 ACATGAGATTCCTTCGCAAACGTATGAACACTAAACCTTCTCATGGTCCTATTCACTTCC 240
Query 272 GTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAGACGAAGC 331
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 241 GTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAAACGAAGC 300
Query 332 GTGGAGCTGCTGCATTAGCACGTCTGAAGGTATATGAAGGTGTTCCTACTCCATATGACA 391
||||||||||||||||||| ||| ||||||||| |||||||||||||||||| ||||| |
Sbjct 301 GTGGAGCTGCTGCATTAGCTCGTTTGAAGGTATTTGAAGGTGTTCCTACTCCGTATGATA 360
Query 392 AGATCAAGAGGATGGTCATCCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTCACA 451
|||||||||||||||| || |||||||||||||||||||||||||||||||||||||| |
Sbjct 361 AGATCAAGAGGATGGTTATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTCATA 420
Query 452 AATACTGTCTATTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTACGACACCATCA 511
|||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||||
Sbjct 421 AATACTGTCTTTTGGGTCGTCTTTCGTCTGAAGTTGGGTGGAACCATTACGATACCATCA 480
Query 512 AGGAGCTGGAGACAAAGAGGAAGGAGAGAGCCCACGTGGTTTACGAGCGAAAGAAGCAAC 571
|||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||
Sbjct 481 AGGAGCTGGAGACAAAGAGGAAAGAGAGAGCTCAAGTGGTTTACGAGCGAAAGAAGCAAC 540
Query 572 TTAACAAACTTAGAGTTAAGGCCGAGAAGGTCGCTGAAGAGAAGCTCGGAGCACAGCTCG 631
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 541 TTAACAAACTTAGAGTTAAGGCTGAGAAGGTTGCTGAAGAGAAGCTCGGAGCACAGCTCG 600
Query 632 ATATTCTTGCGCCAGTTAAGTACTGAGCT 660
|||||||||| ||||| ||||||||||||
Sbjct 601 ATATTCTTGCACCAGTCAAGTACTGAGCT 629
> Ahg478031 jgi|Araly1|478031|fgenesh2_kg.3__732__AT3G07110.2
Length=796
Score = 680 bits (368), Expect = 0.0
Identities = 548/634 (86%), Gaps = 15/634 (2%)
Strand=Plus/Plus
Query 33 GAAAATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTCGACGCGCGCCACCA 92
|||||||||||| |||||||| || ||| ||||||| || || || || || || |||||
Sbjct 69 GAAAATGGTGTCTGGATCAGGAATTTGCGCGAAGCGAGTGGTGGTTGATGCTCGTCACCA 128
Query 93 CATGCTTGGCCGTCTT-GCGTCGATCACCGCTAAA-GAGCTTCTCAATGGCCAGAAAGTT 150
|||||| || || ||| || ||||| || ||| ||||| |||||||||||||| |||
Sbjct 129 CATGCTAGGTCG-CTTGGCCTCGATTGTGGC-AAAGGAGCTGCTCAATGGCCAGAAGGTT 186
Query 151 GTCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGCGGACTCGTTCGTCAGAAAATGAAG 210
|| ||||||||||||| |||||||| |||||||| ||||| ||||||||||| ||||||
Sbjct 187 GTGGTTGTCCGGTGCGAGGAGATTTGTCTCTCCGGTGGACTTGTTCGTCAGAAGATGAAG 246
Query 211 TACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTATTCACTTC 270
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 247 TACATGAGGTTTCTCCGCAAGCGTATGAACACTAAACCTTCTCACGGACCTATTCACTTC 306
Query 271 CGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAAGACGAAG 330
|||||||| ||||| |||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 307 CGTGCTCCCTCCAAGATCTTCTGGCGTACCGTTCGCGGTATGATTCCACACAAGACTAAG 366
Query 331 CGTGGAGCTGCTGCA-TTAGCACGTC-TGAAGGTATATGAAGGTGTTCCTACTCCATATG 388
||||||||| |||| || || || | ||||||| | |||||| ||||||||||||||||
Sbjct 367 CGTGGAGCTAATGCACTT-GCCCG-CTTGAAGGTCTTTGAAGGAGTTCCTACTCCATATG 424
Query 389 ACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAGGTGTTGAGGCTTCAAGCTGGTC 448
|||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||| |
Sbjct 425 ACAAGATCAAGAGGATGGTCATTCCTGATGCTCTCAAGGTCTTGAGGCTGCAGGCTGGCC 484
Query 449 ACAAATACTGTCTATTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTACGACACCA 508
||||||||||||| ||||| || |||||||||||||| || |||||||| ||||||||||
Sbjct 485 ACAAATACTGTCTGTTGGGTCGCCTTTCTTCTGAAGTCGGATGGAACCACTACGACACCA 544
Query 509 TCAAG--G-AGCTGGAGA-CAAAGAGGAAGGAGAGAGCCCACGTGGTTTACGAGCGAAAG 564
||||| | ||||||||| ||| ||| ||||| ||||| || || ||||| || |||||
Sbjct 545 TCAAGCAGGAGCTGGAGAACAA-GAGAAAGGAAAGAGCTCAAGTTGTTTATGAAAGAAAG 603
Query 565 AAGCAACTTAACAAACTTAGAGTTAAGGCCGAGAAGGTCGCTGAAGAGAAGCTCGGAGCA 624
||||||||||||||||| |||| |||||||||||||| |||||||||||||| ||| |
Sbjct 604 AAGCAACTTAACAAACTCAGAGCCAAGGCCGAGAAGGTTGCTGAAGAGAAGCTTGGATCT 663
Query 625 CAGCTCGATA-TTCTTGCGCCAGTTAAGTACTGA 657
|| | || | ||||||| ||||| |||||||||
Sbjct 664 CAATTGGA-AGTTCTTGCACCAGTCAAGTACTGA 696
> Ahg930609 jgi|Araly1|930609|scaffold_303066.1
Length=661
Score = 579 bits (313), Expect = 1e-164
Identities = 535/641 (83%), Gaps = 20/641 (3%)
Strand=Plus/Plus
Query 28 GAAGCGA-AA-ATGGTGTCAGGATCAGGGATATGCTCGAAGCGCGTTGTCGTCGACGCGC 85
||||||| || |||||||| || ||||||||||| || ||||| ||||| || ||||| |
Sbjct 10 GAAGCGAGAAGATGGTGTCTGGGTCAGGGATATGTTCAAAGCGTGTTGTGGTTGACGCAC 69
Query 86 GCCACCACATGCT-TGGCCGTCTTGCGTCGATCACCGCTAAAGAGCTT-CTCAATGGCCA 143
| ||||| ||| | ||| |||||||| |||||||| |||||||| || |||||||| ||
Sbjct 70 GTCACCATATG-TGTGGTCGTCTTGCTTCGATCACAGCTAAAGA-ATTGCTCAATGGACA 127
Query 144 GAAAGTTGTCATTGTCCGGTGCGAAGAGATTTGCCTCTCCGGCGGACTCGTTCGTCAGAA 203
|| |||||| |||| || || || |||||||| | || || || | |||||||||||
Sbjct 128 GAGTGTTGTCGTTGTTCGATGTGAGGAGATTTGTTTGTCTGGTGGTTTGGTTCGTCAGAA 187
Query 204 AATGAAGTACATGAGGTTTCTTCGCAAACGTATGAACACTAAACCTTCTCATGGACCTAT 263
||||||||||||||||||||| | ||||||||||||||||||||||||||||| |||||
Sbjct 188 GATGAAGTACATGAGGTTTCTTAGGAAACGTATGAACACTAAACCTTCTCATGGTCCTAT 247
Query 264 TCACTTCCGTGCTCCTTCCAAAATCTTCTGGCGTACTGTTCGCGGTATGATTCCACACAA 323
||| ||||||||||| || || |||||||||||||| ||||| || ||||||||||||||
Sbjct 248 TCATTTCCGTGCTCCGTCTAAGATCTTCTGGCGTACCGTTCGTGGGATGATTCCACACAA 307
Query 324 GACGAAGCGTGGAGCTGCTGCA-TTAGCACGTCTGAAGGTATATGAAGGTGTTCCTAC-T 381
||| |||||||| |||||||| || |||||| ||||||| | ||| || || || || |
Sbjct 308 GACCAAGCGTGGTGCTGCTGCTCTT-GCACGTTTGAAGGTTTTTGAGGGAGTACC-ACCT 365
Query 382 CCATATGACAAGATCAAGAGGATGGTCATCCCTGATGCTCTCAAGGTGTTGAGGCTTCAA 441
|| ||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 366 CCTTATGACAAGGTCAAGAGAATGGTCATTCCTGATGCTCTCAAGGTGTTGAGGCTTCAG 425
Query 442 GCTGGTCACAAATACTGTCTA-TTGGGCCGTCTTTCTTCTGAAGTTGGGTGGAACCATTA 500
||||||||||| ||||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 426 GCTGGTCACAAGTACTG-CTTGTTGGGACGTCTTTCTTCTGAAGTTGGCTGGAACCATTA 484
Query 501 CGACACCATCAAGGAGCTGGAGAC-AAAGAGGAAGGAGAGAGCC-CACG-TGGTTTACGA 557
|| ||||| |||||||| ||| ||| || |||||||| | | || | || | || ||
Sbjct 485 TGATACCATTAAGGAGCTTGAGGTGAAA-AGAAAGGAGAG-GTCACAAGCTG-TGTATGA 541
Query 558 GCGAAAGAAGCAACTTAACAAACTTAGAGTTAAGGCCGAGAAGGTCGCTGAAGAGAAGCT 617
||| ||||||||||| ||||| || || | |||||||||||||| || || ||||| ||
Sbjct 542 GCGTAAGAAGCAACTCAACAAGCTCAGGGCAAAGGCCGAGAAGGTTGCAGAGGAGAAACT 601
Query 618 CGGAGCACAGCTCGATATTCTTGCGCC-AGTTAAGTACTGA 657
||| | ||||||||| ||||||| || | |||||||||||
Sbjct 602 TGGATCCCAGCTCGATGTTCTTGCACCGA-TTAAGTACTGA 641
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30841439853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5